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You-Ping Deng · SciRah

Researcher profile · Semantic Scholar

You-Ping Deng

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You-Ping Deng — researcher profile on SciRah

h-index: 53
Works: 270
Citations: 11K

Most-cited papers

A global metagenomic map of urban microbiomes and antimicrobial resistance
D. Danko, D. Bezdan, Evan E. Afshin, Sofia Ahsanuddin +95 more
2021Cell307 citations Open access
Semantic Scholar
Risk Factors Associated with Clinical Outcomes in 323 COVID-19 Hospitalized Patients in Wuhan, China
Ling Hu, Shao-Qiu Chen, Yuanyuan Fu, Zitong Gao +16 more
2020Clinical Infectious Diseases294 citations Open access
Semantic Scholar
Collagen type IV alpha 1 (COL4A1) and collagen type XIII alpha 1 (COL13A1) produced in cancer cells promote tumor budding at the invasion front in human urothelial carcinoma of the bladder
M. Miyake, S. Hori, Y. Morizawa, Y. Tatsumi +17 more
2017OncoTarget101 citations Open access
Semantic Scholar
The function of LncRNAs and their role in the prediction, diagnosis, and prognosis of lung cancer
Yu Chen, Emory Zitello, R. Guo, You-Ping Deng
2021Clinical and Translational Medicine96 citations Open access
Semantic Scholar
Risk Factors Associated with Clinical Outcomes in 323 COVID-19 Patients in Wuhan, China
Ling Hu, Shao-Qiu Chen, Yuanyuan Fu, Zitong Gao +16 more
2020medRxiv68 citations Open access
Semantic Scholar
RNA sequencing-based analysis of the laying hen uterus revealed the novel genes and biological pathways involved in the eggshell biomineralization
Nirvay Sah, D. Kuehu, V. Khadka, You-Ping Deng +3 more
2018Scientific Reports67 citations Open access
Semantic Scholar
Plasma MicroRNA Pair Panels as Novel Biomarkers for Detection of Early Stage Breast Cancer
Rui Fang, Yong Zhu, Ling Hu, V. Khadka +6 more
2019Frontiers in Physiology59 citations Open access
Semantic Scholar
Analysis and performance assessment of the whole genome bisulfite sequencing data workflow: currently available tools and a practical guide to advance DNA methylation studies
Ting Gong, Heather Borgard, Zao Zhang, Shao-Qiu Chen +2 more
2022Small Methods57 citations Open access
Semantic Scholar
The landscape of bacterial presence in tumor and adjacent normal tissue across 9 major cancer types using TCGA exome sequencing
Rebecca M. Rodriguez, B. Hernandez, Mark Menor, You-Ping Deng +1 more
2020Computational and Structural Biotechnology Journal55 citations Open access
Semantic Scholar
Association of Low Birth Weight and Premature Birth With the Risk of Metabolic Syndrome: A Meta-Analysis
L. Liao, You-Ping Deng, Dongchi Zhao
2020Frontiers in Pediatrics55 citations Open access
Semantic Scholar
Increased AURKA promotes cell proliferation and predicts poor prognosis in bladder cancer
Meng-Jie Guo, Si-Cheng Lu, Hong-Ming Huang, Yao-Hui Wang +5 more
2018BMC Systems Biology54 citations Open access
Semantic Scholar
The Function and Mechanism of Lipid Molecules and Their Roles in The Diagnosis and Prognosis of Breast Cancer
R. Guo, Yu Chen, Heather Borgard, M. Jijiwa +3 more
2020Molecules53 citations Open access
Semantic Scholar
COVID-19 drug practices risk antimicrobial resistance evolution
Ebrahim Afshinnekoo, Chandrima Bhattacharya, A. Burguete-García, E. Castro-Nallar +17 more
2021The Lancet Microbe51 citations Open access
Semantic Scholar
Global lipidomics identified plasma lipids as novel biomarkers for early detection of lung cancer
Zong-Tao Yu, Han-Kui Chen, Junmei Ai, Yong Zhu +7 more
2017OncoTarget51 citations Open access
Semantic Scholar
Serum metabolite profiles are associated with the presence of advanced liver fibrosis in Chinese patients with chronic hepatitis B viral infection
G. Xie, Xiaoning Wang, Run-Min Wei, Jingye Wang +16 more
2020BMC Medicine47 citations Open access
Semantic Scholar
The SEQC2 epigenomics quality control (EpiQC) study
J. Foox, J. Nordlund, C. Lalancette, Ting Gong +53 more
2020Genome Biology45 citations Open access
Semantic Scholar
Exposure-based assessment of chemical teratogenicity using morphogenetic aggregates of human embryonic stem cells
Y. Marikawa, Hong-Rui Chen, Mark Menor, You-Ping Deng +1 more
2019Reproductive Toxicology40 citations Open access
Semantic Scholar
Current trend and development in bioinformatics research
Yuanyuan Fu, Zhou-Gui Ling, H. Arabnia, You-Ping Deng
2020BMC Bioinformatics37 citations Open access
Semantic Scholar
The Evaluation of Serum Biomarkers for Non-small Cell Lung Cancer (NSCLC) Diagnosis
Rui Fang, Yong M. Zhu, V. Khadka, Fan Zhang +2 more
2018Frontiers in Physiology36 citations Open access
Semantic Scholar
Small-cell Carcinomas of the Urinary Bladder and Prostate: TERT Promoter Mutation Status Differentiates Sites of Malignancy and Provides Evidence of Common Clonality Between Small-cell Carcinoma of the Urinary Bladder and Urothelial Carcinoma.
David S. Priemer, Ming-Sheng Wang, Shao-Bo Zhang, A. López-Beltran +9 more
2017European Urology Focus36 citations
Semantic Scholar
CPNE1 silencing inhibits the proliferation, invasion and migration of human osteosarcoma cells.
Zhen-Huan Jiang, Jian-Nong Jiang, Bi-Zeng Zhao, Hui-Lin Yang +7 more
2017Oncology Report36 citations Open access
Semantic Scholar
Development of a miRNA-seq based prognostic signature in lung adenocarcinoma
Chathura Siriwardhana, V. Khadka, John J. Chen, You-Ping Deng
2019BMC Cancer34 citations Open access
Semantic Scholar
Upregulated ethanolamine phospholipid synthesis via selenoprotein I is required for effective metabolic reprogramming during T cell activation
Chi Ma, Fukun W. Hoffmann, Michael P. Marciel, Kathleen E Page +11 more
2021Molecular Metabolism33 citations Open access
Semantic Scholar
Global Genetic Cartography of Urban Metagenomes and Anti-Microbial Resistance
D. Danko, D. Bezdan, Ebrahim Afshinnekoo, Sofia Ahsanuddin +93 more
2019bioRxiv33 citations Open access
Semantic Scholar
Strategy for an Association Study of the Intestinal Microbiome and Brain Metabolome Across the Lifespan of Rats.
Tian-Lu Chen, Yijun You, G. Xie, Xiao-Jiao Zheng +13 more
2018Analytical Chemistry32 citations
Semantic Scholar
RNA sequencing-based analysis of the magnum tissues revealed the novel genes and biological pathways involved in the egg-white formation in the laying hen
Nirvay Sah, D. Kuehu, V. Khadka, You-Ping Deng +3 more
2021BMC Genomics30 citations Open access
Semantic Scholar
The emerging role of microRNA-4487/6845-3p in Alzheimer’s disease pathologies is induced by Aβ25–35 triggered in SH-SY5Y cell
Ling Hu, Rong Zhang, Qiong Yuan, Yinping Gao +10 more
2018BMC Systems Biology30 citations Open access
Semantic Scholar
Development of a tRNA-derived small RNA diagnostic and prognostic signature in liver cancer
Yingping Zuo, Shao-Qiu Chen, Ling-Ling Yan, Ling Hu +4 more
2021Genes and Diseases29 citations Open access
Semantic Scholar
Clinical significance of MLH1/MSH2 for stage II/III sporadic colorectal cancer
Shui-ming Wang, B. Jiang, You-Ping Deng, Shu-liang Huang +2 more
2019World Journal of Gastrointestinal Oncology28 citations Open access
Semantic Scholar
A history of the MetaSUB consortium: Tracking urban microbes around the globe
Krista A. Ryon, Braden T. Tierney, A. Frolova, A. Kahles +30 more
2022iScience27 citations Open access
Semantic Scholar
SARS-CoV-2 and the host-immune response
D. Maison, You-Ping Deng, M. Gerschenson
2023Frontiers in Immunology26 citations Open access
Semantic Scholar
Ratio-Based Method To Identify True Biomarkers by Normalizing Circulating ncRNA Sequencing and Quantitative PCR Data
You-Ping Deng, Yong Zhu, Hongwei Wang, V. Khadka +11 more
2019Analytical Chemistry26 citations Open access
Semantic Scholar
Comprehensive landscape of tRNA-derived fragments in lung cancer
Zitong Gao, M. Jijiwa, Masaki Nasu, Heather Borgard +8 more
2022Molecular Therapy: Oncolytics25 citations Open access
Semantic Scholar
Dysregulated KRAS gene-signaling axis and abnormal chromatin remodeling drive therapeutic resistance in heterogeneous-sized circulating tumor cells in gastric cancer patients.
Yang Chen, Yan-Yan Li, Chang-Song Qi, Cheng Zhang +14 more
2021Cancer Letters25 citations Open access
Semantic Scholar
Biology-inspired graph neural network encodes reactome and reveals biochemical reactions of disease
Joshua G. Burkhart, Guanming Wu, Xubo Song, F. Raimondi +3 more
2023Patterns24 citations Open access
Semantic Scholar
Global lipidomics reveals two plasma lipids as novel biomarkers for the detection of squamous cell lung cancer: A pilot study
Zong-Tao Yu, Han-Kui Chen, Yong Zhu, Junmei Ai +7 more
2018Oncology Letters23 citations Open access
Semantic Scholar
RSK1 and RSK2 serine/threonine kinases regulate different transcription programs in cancer
Won Seok Yang, Maisel J. Caliva, V. Khadka, M. Tiirikainen +3 more
2023Frontiers in Cell and Developmental Biology22 citations Open access
Semantic Scholar
Discovery of Biomarkers to Identify Peri-Implant Osteolysis Before Radiographic Diagnosis
Ryan D. Ross, You-Ping Deng, Rui Fang, Nicholas B. Frisch +2 more
2018Journal of Orthopaedic Research20 citations Open access
Semantic Scholar
RNA-Sequencing based analysis of bovine endometrium during the maternal recognition of pregnancy
B. Adhikari, Chin N. Lee, V. Khadka, You-Ping Deng +5 more
2022BMC Genomics19 citations Open access
Semantic Scholar
Protective effect of DLX6-AS1 silencing against cerebral ischemia/reperfusion induced impairments
Xia-Min Hu, Zi-Wu Xiang, Wei Zhang, Zhi-Jun Yu +4 more
2020Aging19 citations Open access
Semantic Scholar
Identification of plasma lipid species as promising diagnostic markers for prostate cancer
Xiao-Li Chen, Yong Zhu, M. Jijiwa, Masaki Nasu +6 more
2020BMC Medical Informatics and Decision Making19 citations Open access
Semantic Scholar
Identification of lncRNA biomarkers for lung cancer through integrative cross-platform data analyses
Tianying Zhao, V. Khadka, You-Ping Deng
2020Aging18 citations Open access
Semantic Scholar
Plasma small ncRNA pair panels as novel biomarkers for early-stage lung adenocarcinoma screening
Y. Dou, Yong Zhu, Junmei Ai, Han-Kui Chen +7 more
2018BMC Genomics18 citations Open access
Semantic Scholar
Circulating microRNA Biomarker for Detecting Breast Cancer in High-Risk Benign Breast Tumors
V. Khadka, Masaki Nasu, You-Ping Deng, M. Jijiwa
2023International Journal of Molecular Sciences17 citations Open access
Semantic Scholar
Sulfite preservatives effects on the mouth microbiome: Changes in viability, diversity and composition of microbiota
Sally V Irwin, Luz Maria Deardorff, You-Ping Deng, Peter Fisher +5 more
2021bioRxiv17 citations Open access
Semantic Scholar
MRTF-A-mediated protection against amyloid-β-induced neuronal injury correlates with restoring autophagy via miR-1273g-3p/mTOR axis in Alzheimer models
Wei Zhang, Yuewang Yang, Zifei Xiang, Jinping Cheng +7 more
2022Aging15 citations Open access
Semantic Scholar
SARS‐CoV‐2 Non-structural protein 1(NSP1) mutation virulence and natural selection: Evolutionary trends in the six continents
Samira Salami Ghaleh, K. Rahimian, M. Mahmanzar, Bahar Mahdavi +6 more
2022Virus Research15 citations Open access
Semantic Scholar
Lack of Efficacy of Combined Carbohydrate Antigen Markers for Lung Cancer Diagnosis
Z.-N. Wen, Ying Huang, Zhou-Gui Ling, Ji-Fei Chen +6 more
2020Disease Markers15 citations Open access
Semantic Scholar
Development of somatic mutation signatures for risk stratification and prognosis in lung and colorectal adenocarcinomas
Mark Menor, Yong Zhu, Yu Wang, Ji-Cai Zhang +2 more
2019BMC Medical Genomics15 citations Open access
Semantic Scholar
T-cell activation decreases miRNA-15a/16 levels to promote MEK1–ERK1/2–Elk1 signaling and proliferative capacity
Frank R. Urena, Chi Ma, Fukun W. Hoffmann, Lance G. A. Nunes +5 more
2022Journal of Biological Chemistry14 citations Open access
Semantic Scholar

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