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Peter Ebert · SciRah

Researcher profile · Semantic Scholar

Peter Ebert

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Peter Ebert — researcher profile on SciRah

h-index: 26
Works: 65
Citations: 5,725

Most-cited papers

miR-181a is an intrinsic modulator of T cell sensitivity and selection.
Qi-Jing Li, J. Chau, Peter Ebert, Giselle Sylvester +9 more
2007Cell1,243 citations Open access
Semantic Scholar
Haplotype-resolved diverse human genomes and integrated analysis of structural variation
Peter Ebert, P. Audano, Qi-Hui Zhu, B. Rodriguez-Martin +61 more
2021Science671 citations Open access
Semantic Scholar
MAP Kinase Inhibition Promotes T Cell and Anti-tumor Activity in Combination with PD-L1 Checkpoint Blockade.
Peter Ebert, J. Cheung, Yagai Yang, Erin McNamara +8 more
2016Immunity657 citations Open access
Semantic Scholar
Clonal Deletion Prunes, but does not Eliminate Self-Specific αβ CD8+ T Lymphocytes
Wong Yu, N. Jiang, Peter Ebert, B. Kidd +12 more
2015Immunity286 citations Open access
Semantic Scholar
DNA Methylation Dynamics of Human Hematopoietic Stem Cell Differentiation
M. Farlik, F. Halbritter, F. Müller, F. Choudry +13 more
2016Cell Stem Cell253 citations Open access
Semantic Scholar
Pangenome-based genome inference allows efficient and accurate genotyping across a wide spectrum of variant classes
Jana Ebler, Peter Ebert, Wayne E. Clarke, T. Rausch +8 more
2022Nature Genetics234 citations Open access
Semantic Scholar
Magnitude and Dynamics of the T-Cell Response to SARS-CoV-2 Infection at Both Individual and Population Levels
T. Snyder, R. Gittelman, M. Klinger, Damon H. May +54 more
2020medRxiv214 citations Open access
Semantic Scholar
Dynamics of p56lck translocation to the T cell immunological synapse following agonist and antagonist stimulation.
Lauren I. Richie Ehrlich, Peter Ebert, M. Krummel, A. Weiss +1 more
2002Immunity198 citations Open access
Semantic Scholar
Epigenomic Profiling of Human CD4+ T Cells Supports a Linear Differentiation Model and Highlights Molecular Regulators of Memory Development.
P. Durek, K. Nordström, G. Gasparoni, A. Salhab +54 more
2016Immunity188 citations Open access
Semantic Scholar
Semi-automated assembly of high-quality diploid human reference genomes
E. Jarvis, G. Formenti, A. Rhie, A. Guarracino +79 more
2022Nature185 citations Open access
Semantic Scholar
Fully phased human genome assembly without parental data using single-cell Strand-seq and long reads
D. Porubsky, Peter Ebert, P. Audano, M. Vollger +17 more
2020Nature Biotechnology162 citations Open access
Semantic Scholar
Imaging synapse formation during thymocyte selection: inability of CD3zeta to form a stable central accumulation during negative selection.
Lauren I. Richie, Peter Ebert, Lawren C. Wu, M. Krummel +2 more
2002Immunity160 citations Open access
Semantic Scholar
Recurrent inversion polymorphisms in humans associate with genetic instability and genomic disorders
D. Porubsky, Wolfram Höps, Hufsah Ashraf, Ping-Hsun Hsieh +21 more
2022Cell149 citations Open access
Semantic Scholar
Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction
Florian Schmidt, Nina Gasparoni, G. Gasparoni, Kathrin Gianmoena +22 more
2016bioRxiv115 citations Open access
Semantic Scholar
Assembly of 43 human Y chromosomes reveals extensive complexity and variation
P. Hallast, Peter Ebert, M. Loftus, Feyza Yilmaz +28 more
2023Nature94 citations Open access
Semantic Scholar
Epigenetic dynamics of monocyte-to-macrophage differentiation
S. Wallner, Christopher Schröder, E. Leitão, Tea Berulava +26 more
2016Epigenetics & Chromatin94 citations Open access
Semantic Scholar
Ten Simple Rules for Developing Usable Software in Computational Biology
M. List, Peter Ebert, F. Albrecht
2017PLoS Comput. Biol.91 citations Open access
Semantic Scholar
Read-Based Phasing and Analysis of Phased Variants with WhatsHap.
Marcel Martin, Peter Ebert, T. Marschall
2023Methods in molecular biology83 citations Open access
Semantic Scholar
A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains
A. Salhab, K. Nordström, G. Gasparoni, Kathrin Kattler +10 more
2018Genome Biology83 citations Open access
Semantic Scholar
Immature CD4+CD8+ Thymocytes Do Not Polarize Lipid Rafts in Response to TCR-Mediated Signals1
Peter Ebert, J. F. Baker, J. Punt
2000Journal of Immunology63 citations
Semantic Scholar
Gaps and complex structurally variant loci in phased genome assemblies
D. Porubsky, M. Vollger, William T. Harvey, Allison N. Rozanski +9 more
2022bioRxiv52 citations Open access
Semantic Scholar
Low Ligand Requirement for Deletion and Lack of Synapses in Positive Selection Enforce the Gauntlet of Thymic T Cell Maturation
Peter Ebert, Lauren I. Richie Ehrlich, Mark M. Davis
2008Immunity50 citations Open access
Semantic Scholar
Photocrosslinkable pMHC monomers stain T cells specifically and cause ligand-bound TCRs to be ‘preferentially’ transported to the cSMAC
Jianming Xie, J. Huppa, E. Newell, Jun Huang +3 more
2012Nature Immunology48 citations Open access
Semantic Scholar
T Cell Receptor (TCR) and Transforming Growth Factor β (TGF-β) Signaling Converge on DNA (Cytosine-5)-methyltransferase to Control forkhead box protein 3 (foxp3) Locus Methylation and Inducible Regulatory T Cell Differentiation*
Chao-Ran Li, Peter Ebert, Qi-Jing Li
2013Journal of Biological Chemistry43 citations Open access
Semantic Scholar
Unique and assay specific features of NOMe-, ATAC- and DNase I-seq data
K. Nordström, Florian Schmidt, Nina Gasparoni, A. Salhab +9 more
2019bioRxiv40 citations Open access
Semantic Scholar
TEPIC 2—an extended framework for transcription factor binding prediction and integrative epigenomic analysis
Florian Schmidt, Fabian Kern, Peter Ebert, N. Baumgarten +1 more
2018Bioinform.34 citations Open access
Semantic Scholar
Whole-genome long-read sequencing downsampling and its effect on variant calling precision and recall
William T. Harvey, Peter Ebert, Jana Ebler, P. Audano +7 more
2023bioRxiv25 citations Open access
Semantic Scholar
A fully phased accurate assembly of an individual human genome
D. Porubsky, Peter Ebert, P. Audano, M. Vollger +15 more
2019bioRxiv25 citations Open access
Semantic Scholar
BiQ Analyzer HiMod: an interactive software tool for high-throughput locus-specific analysis of 5-methylcytosine and its oxidized derivatives
Daniel Becker, P. Lutsik, Peter Ebert, C. Bock +2 more
2014Nucleic Acids Res.25 citations Open access
Semantic Scholar
Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function
Christopher Schröder, E. Leitão, S. Wallner, G. Schmitz +10 more
2017Epigenetics & Chromatin24 citations Open access
Semantic Scholar
Temporal enhancer profiling of parallel lineages identifies AHR and GLIS1 as regulators of mesenchymal multipotency
Déborah Gerard, Florian Schmidt, A. Ginolhac, M. Schmitz +5 more
2018Nucleic Acids Research19 citations Open access
Semantic Scholar
Functional Development of the T Cell Receptor for Antigen
Peter Ebert, Qi-Jing Li, J. Huppa, Mark M. Davis
2010Progress in Molecular Biology and Translational Science15 citations Open access
Semantic Scholar
Impact and characterization of serial structural variations across humans and great apes
Wolfram Höps, T. Rausch, Michael Jendrusch, Hufsah Ashraf +50 more
2023bioRxiv13 citations Open access
Semantic Scholar
ASHLEYS: automated quality control for single-cell Strand-seq data
Christina Gros, A. Sanders, J. Korbel, T. Marschall +1 more
2021Bioinform.13 citations Open access
Semantic Scholar
Assembly of 43 diverse human Y chromosomes reveals extensive complexity and variation
P. Hallast, Peter Ebert, M. Loftus, Feyza Yilmaz +28 more
2023bioRxiv10 citations Open access
Semantic Scholar
A general concept for consistent documentation of computational analyses
Peter Ebert, F. Müller, K. Nordström, Thomas Lengauer +1 more
2015Database J. Biol. Databases Curation10 citations Open access
Semantic Scholar
De novo assembly of 64 haplotype-resolved human genomes of diverse ancestry and integrated analysis of structural variation
Peter Ebert, P. Audano, Qi-Hui Zhu, B. Rodriguez-Martin +59 more
2020bioRxiv9 citations Open access
Semantic Scholar
Haplotype-resolved inversion landscape reveals hotspots of mutational recurrence associated with genomic disorders
D. Porubsky, Wolfram Höps, Hufsah Ashraf, Ping-Hsun Hsieh +21 more
2021bioRxiv8 citations Open access
Semantic Scholar
Fast detection of differential chromatin domains with SCIDDO
Peter Ebert, Marcel H. Schulz
2018bioRxiv8 citations Open access
Semantic Scholar
Integrative analysis of single-cell expression data reveals distinct regulatory states in bidirectional promoters
Fatemeh Behjati Ardakani, Kathrin Kattler, K. Nordström, Nina Gasparoni +17 more
2018Epigenetics & Chromatin6 citations Open access
Semantic Scholar
Improving reference epigenome catalogs by computational prediction
Peter Ebert, C. Bock
2015Nature Biotechnology6 citations
Semantic Scholar
Multimodal, broadly neutralizing antibodies against SARS-CoV-2 identified by high-throughput native pairing of BCRs from bulk B cells
Gladys J. Keitany, B. E. Rubin, M. Garrett, Andrea Musa +31 more
2023Cell Chemical Biology5 citations Open access
Semantic Scholar
Alterations in the hepatocyte epigenetic landscape in steatosis
R. K. Maji, Beate Czepukojc, M. Scherer, S. Tierling +19 more
2023Epigenetics & Chromatin5 citations Open access
Semantic Scholar
Partially methylated domains are hallmarks of a cell specific epigenome topology
A. Salhab, K. Nordström, Kathrin Kattler, Peter Ebert +8 more
2018bioRxiv5 citations Open access
Semantic Scholar
DNAMethylation Dynamics of Human Hematopoietic Stem Cell Differentiation
M. Farlik, F. Halbritter, F. Choudry, Peter Ebert +12 more
20175 citations
Semantic Scholar
Epigenome-based prediction of gene expression across species
Peter Ebert, Thomas Lengauer, C. Bock
2018bioRxiv3 citations Open access
Semantic Scholar
Temporal epigenomic profiling identifies AHR and GLIS1 as super-enhancer controlled regulators of mesenchymal multipotency
Déborah Gerard, Florian Schmidt, A. Ginolhac, M. Schmitz +5 more
2017bioRxiv3 citations Open access
Semantic Scholar
TCR-Mediated Signals Polarize Lipid Rafts in Response to Thymocytes Do Not + CD8+ Immature CD4
Peter Ebert, J. F. Baker, J. Punt
20003 citations
Semantic Scholar
Combining transcription factor affinities and open chromatin data for accurate gene expression prediction
Florian Schmidt, Nina Gasparoni, G. Gasparoni, Kathrin Gianmoena +22 more
20162 citations Open access
Semantic Scholar
HGSVC2 project code contributions
Peter Ebert
20211 citations
Semantic Scholar

Frequent co-authors

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T. Marschall×15
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J. Korbel×13
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Thomas Lengauer×13
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D. Porubsky×12
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