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J. Fredrickson · SciRah

Researcher profile · Semantic Scholar

J. Fredrickson

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J. Fredrickson — researcher profile on SciRah

h-index: 101
Works: 360
Citations: 37K

Most-cited papers

Quantifying community assembly processes and identifying features that impose them
J. Stegen, Xue-Ju Lin, J. Fredrickson, Xing-Yuan Chen +4 more
2013The ISME Journal2,245 citations Open access
Semantic Scholar
Stochastic and deterministic assembly processes in subsurface microbial communities
J. Stegen, Xue-Ju Lin, A. Konopka, J. Fredrickson
2012The ISME Journal1,827 citations Open access
Semantic Scholar
Extracellular electron transfer mechanisms between microorganisms and minerals
Liang Shi, Hai-Liang Dong, G. Reguera, H. Beyenal +4 more
2016Nature Reviews Microbiology1,684 citations
Semantic Scholar
Estimating and mapping ecological processes influencing microbial community assembly
J. Stegen, Xue-Ju Lin, J. Fredrickson, A. Konopka
2015Frontiers in Microbiology848 citations Open access
Semantic Scholar
Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover
J. Stegen, J. Fredrickson, M. Wilkins, A. Konopka +9 more
2015Nature Communications364 citations Open access
Semantic Scholar
Dynamics in microbial communities: unraveling mechanisms to identify principles
A. Konopka, S. Lindemann, J. Fredrickson
2014The ISME Journal308 citations Open access
Semantic Scholar
Engineering microbial consortia for controllable outputs
S. Lindemann, H. Bernstein, Hyun-Seob Song, J. Fredrickson +4 more
2016The ISME Journal299 citations Open access
Semantic Scholar
The ‘porin–cytochrome’ model for microbe‐to‐mineral electron transfer
D. Richardson, J. Butt, J. Fredrickson, J. Zachara +7 more
2012Molecular Microbiology214 citations Open access
Semantic Scholar
Rapid electron exchange between surface-exposed bacterial cytochromes and Fe(III) minerals
Gaye F. White, Zhi Shi, Liang Shi, Zhe-Min Wang +7 more
2013Proceedings of the National Academy of Sciences of the United States of America205 citations Open access
Semantic Scholar
Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated ‘Omics Approach
S. Lindemann, Jennifer M. Mobberley, J. Cole, L. M. Markillie +8 more
2017Frontiers in Microbiology192 citations Open access
Semantic Scholar
A trans-outer membrane porin-cytochrome protein complex for extracellular electron transfer by Geobacter sulfurreducens PCA
Yimo Liu, Zhe-Min Wang, Juan Liu, Caleb E. Levar +13 more
2014Environmental Microbiology Reports186 citations Open access
Semantic Scholar
Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology
J. Stegen, T. Johnson, J. Fredrickson, M. Wilkins +11 more
2018Nature Communications180 citations Open access
Semantic Scholar
Persistence of uranium groundwater plumes: contrasting mechanisms at two DOE sites in the groundwater-river interaction zone.
J. Zachara, P. Long, J. Bargar, James A. Davis +9 more
2013Journal of Contaminant Hydrology150 citations
Semantic Scholar
Redox Linked Flavin Sites in Extracellular Decaheme Proteins Involved in Microbe-Mineral Electron Transfer.
M. Edwards, Gaye F. White, M. Norman, Alice Tome-Fernandez +7 more
2015Scientific Reports149 citations Open access
Semantic Scholar
Deterministic influences exceed dispersal effects on hydrologically‐connected microbiomes
E. Graham, A. Crump, C. Resch, S. Fansler +4 more
2017Environmental Microbiology148 citations Open access
Semantic Scholar
Syntrophic anaerobic photosynthesis via direct interspecies electron transfer
Phuc Ha, S. Lindemann, Liang Shi, A. Dohnalkova +3 more
2017Nature Communications138 citations Open access
Semantic Scholar
Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions
J. Cole, J. Hutchison, R. Renslow, Young-Mo Kim +7 more
2014Frontiers in Microbiology122 citations Open access
Semantic Scholar
Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer
Xue-Ju Lin, J. Mckinley, C. T. Resch, R. Kaluzny +4 more
2012The ISME Journal117 citations Open access
Semantic Scholar
Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism
E. Graham, A. Crump, C. Resch, S. Fansler +4 more
2016Frontiers in Microbiology109 citations Open access
Semantic Scholar
Effect of Water Chemistry and Hydrodynamics on Nitrogen Transformation Activity and Microbial Community Functional Potential in Hyporheic Zone Sediment Columns.
Yuan-Yuan Liu, Chong-Xuan Liu, W. Nelson, Liang Shi +7 more
2017Environmental Science and Technology105 citations Open access
Semantic Scholar
Redox reactions of reduced flavin mononucleotide (FMN), riboflavin (RBF), and anthraquinone-2,6-disulfonate (AQDS) with ferrihydrite and lepidocrocite.
Zhi Shi, J. Zachara, Liang Shi, Zhe-Min Wang +3 more
2012Environmental Science and Technology104 citations
Semantic Scholar
Diel metabolomics analysis of a hot spring chlorophototrophic microbial mat leads to new hypotheses of community member metabolisms
Young-Mo Kim, Shane Nowack, M. T. Olsen, E. Becraft +8 more
2015Frontiers in Microbiology98 citations Open access
Semantic Scholar
The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling
S. Lindemann, J. Moran, J. Stegen, R. Renslow +10 more
2013Frontiers in Microbiology95 citations Open access
Semantic Scholar
Genomic analyses of bacterial porin-cytochrome gene clusters
Liang Shi, J. Fredrickson, J. Zachara
2014Frontiers in Microbiology94 citations Open access
Semantic Scholar
Ecological communities by design
J. Fredrickson
2015Science84 citations
Semantic Scholar
Inference of interactions in cyanobacterial–heterotrophic co-cultures via transcriptome sequencing
A. Beliaev, M. Romine, M. Serres, H. Bernstein +11 more
2014The ISME Journal83 citations Open access
Semantic Scholar
The X‐ray crystal structure of Shewanella oneidensis OmcA reveals new insight at the microbe–mineral interface
M. Edwards, Nanakow A. Baiden, A. Johs, S. Tomanicek +8 more
2014FEBS Letters79 citations
Semantic Scholar
Direct involvement of ombB, omaB, and omcB genes in extracellular reduction of Fe(III) by Geobacter sulfurreducens PCA
Yimo Liu, J. Fredrickson, J. Zachara, Liang Shi
2015Frontiers in Microbiology77 citations Open access
Semantic Scholar
Modeling biofilms with dual extracellular electron transfer mechanisms
R. Renslow, J. Babauta, A. Kuprat, Jim Schenk +3 more
2013Physical Chemistry, Chemical Physics - PCCP76 citations Open access
Semantic Scholar
Genomic distribution of B-vitamin auxotrophy and uptake transporters in environmental bacteria from the Chloroflexi phylum.
I. Rodionova, Xiaoqing Li, A. Plymale, K. Motamedchaboki +5 more
2015Environmental Microbiology Reports63 citations
Semantic Scholar
Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria
I. Rodionova, Xiaoqing Li, V. Thiel, Sergey M. Stolyar +6 more
2013Frontiers in Microbiology59 citations Open access
Semantic Scholar
The roles of CymA in support of the respiratory flexibility of Shewanella oneidensis MR-1.
S. Marritt, D. G. McMillan, Liang Shi, J. Fredrickson +4 more
2012Biochemical Society Transactions55 citations
Semantic Scholar
Integrating Ecological and Engineering Concepts of Resilience in Microbial Communities
Hyun-Seob Song, R. Renslow, J. Fredrickson, S. Lindemann
2015Frontiers in Microbiology53 citations Open access
Semantic Scholar
Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies
Z. Hou, W. Nelson, J. Stegen, C. Murray +7 more
2017Scientific Reports51 citations Open access
Semantic Scholar
Unlocking the Constraints of Cyanobacterial Productivity: Acclimations Enabling Ultrafast Growth
H. Bernstein, Ryan S. McClure, E. Hill, L. M. Markillie +8 more
2016mBio50 citations Open access
Semantic Scholar
Effects of soluble flavin on heterogeneous electron transfer between surface-exposed bacterial cytochromes and iron oxides
Zhe-Min Wang, Zhi Shi, Liang Shi, Gaye F. White +4 more
201547 citations Open access
Semantic Scholar
Reductive dissolution of goethite and hematite by reduced flavins
Zhi Shi, J. Zachara, Zhe-Min Wang, Liang Shi +1 more
201344 citations
Semantic Scholar
Single-Cell Imaging and Spectroscopic Analyses of Cr(VI) Reduction on the Surface of Bacterial Cells
Yuan-Min Wang, Papatya C. Sevinç, S. M. Belchik, J. Fredrickson +2 more
2013Langmuir44 citations Open access
Semantic Scholar
Microbial reductive transformation of phyllosilicate Fe(III) and U(VI) in fluvial subsurface sediments.
Ji-Hoon Lee, J. Fredrickson, R. Kukkadapu, M. Boyanov +8 more
2012Environmental Science and Technology44 citations
Semantic Scholar
Nitrate bioreduction in redox-variable low permeability sediments.
Sen Yan, Yuan-Yuan Liu, Chong-Xuan Liu, Liang Shi +8 more
2016Science of the Total Environment43 citations Open access
Semantic Scholar
Trends and future challenges in sampling the deep terrestrial biosphere
M. Wilkins, R. Daly, P. Mouser, R. Trexler +12 more
2014Frontiers in Microbiology41 citations Open access
Semantic Scholar
Fe(II)- and sulfide-facilitated reduction of 99Tc(VII)O4− in microbially reduced hyporheic zone sediments
Ji-Hoon Lee, J. Zachara, J. Fredrickson, S. Heald +4 more
201440 citations
Semantic Scholar
Feedback-controlled LED photobioreactor for photophysiological studies of cyanobacteria.
Matthew R Melnicki, Grigoriy E. Pinchuk, E. Hill, L. Kucek +4 more
2013Bioresource Technology40 citations
Semantic Scholar
Localized electron transfer rates and microelectrode-based enrichment of microbial communities within a phototrophic microbial mat
J. Babauta, Erhan Atci, Phuc Ha, S. Lindemann +4 more
2014Frontiers in Microbiology37 citations Open access
Semantic Scholar
Sustained H2 Production Driven by Photosynthetic Water Splitting in a Unicellular Cyanobacterium
Matthew R Melnicki, Grigoriy E. Pinchuk, E. Hill, L. Kucek +3 more
2012mBio37 citations Open access
Semantic Scholar
Dynamic modeling of aerobic growth of Shewanella oneidensis. Predicting triauxic growth, flux distributions, and energy requirement for growth.
Hyun-Seob Song, D. Ramkrishna, Grigoriy E. Pinchuk, A. Beliaev +2 more
2013Metabolic Engineering34 citations
Semantic Scholar
Biogeochemical cycling at the aquatic–terrestrial interface is linked to parafluvial hyporheic zone inundation history
A. Goldman, E. Graham, A. Crump, D. Kennedy +6 more
201733 citations Open access
Semantic Scholar
Geo- and biogeochemical processes in a heliothermal hypersaline lake
J. Zachara, J. Moran, C. Resch, S. Lindemann +4 more
201632 citations Open access
Semantic Scholar
Molecular structure and free energy landscape for electron transport in the decahaem cytochrome MtrF.
M. Breuer, P. Zarzycki, Liang Shi, T. Clarke +7 more
2012Biochemical Society Transactions30 citations Open access
Semantic Scholar
Trade-offs between microbiome diversity and productivity in a stratified microbial mat
H. Bernstein, C. Brislawn, R. Renslow, K. Dana +8 more
2016The ISME Journal28 citations Open access
Semantic Scholar

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