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Daniel A. Skelly · SciRah

Researcher profile · Semantic Scholar

Daniel A. Skelly

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Daniel A. Skelly — researcher profile on SciRah

h-index: 19
Works: 48
Citations: 2,450

Most-cited papers

Single-Cell Transcriptional Profiling Reveals Cellular Diversity and Intercommunication in the Mouse Heart.
Daniel A. Skelly, Galen T. Squiers, Micheal A. McLellan, M. Bolisetty +3 more
2018Cell Reports508 citations Open access
Semantic Scholar
The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen
Pooja K. Strope, Daniel A. Skelly, S. Kozmin, Gayathri Mahadevan +4 more
2015Genome Research355 citations Open access
Semantic Scholar
High-Resolution Transcriptomic Profiling of the Heart During Chronic Stress Reveals Cellular Drivers of Cardiac Fibrosis and Hypertrophy
Micheal A. McLellan, Daniel A. Skelly, M. Dona, Galen T. Squiers +8 more
2019bioRxiv232 citations Open access
Semantic Scholar
A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data.
Daniel A. Skelly, Marnie Johansson, J. Madeoy, J. Wakefield +1 more
2011Genome Research202 citations Open access
Semantic Scholar
Dynamic Interstitial Cell Response during Myocardial Infarction Predicts Resilience to Rupture in Genetically Diverse Mice
Elvira Forte, Daniel A. Skelly, Mandy Chen, S. Daigle +6 more
2020Cell Reports199 citations Open access
Semantic Scholar
Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast
Daniel A. Skelly, G. Merrihew, Michael Riffle, Caitlin F. Connelly +14 more
2013Genome Research146 citations Open access
Semantic Scholar
Proteomic and transcriptomic profiling reveal different aspects of aging in the kidney
Yuka Takemon, J. Chick, Isabela Gerdes Gyuricza, Daniel A. Skelly +4 more
2020bioRxiv106 citations Open access
Semantic Scholar
Inherited variation in gene expression.
Daniel A. Skelly, James Ronald, J. Akey
2009Annual review of genomics and human genetics (Print)84 citations
Semantic Scholar
Cross-Priming Dendritic Cells Exacerbate Immunopathology After Ischemic Tissue Damage in the Heart
Elvira Forte, Bryant Perkins, A. Sintou, H. Kalkat +15 more
2020Circulation80 citations Open access
Semantic Scholar
Mouse Phenome Database: an integrative database and analysis suite for curated empirical phenotype data from laboratory mice
M. Bogue, Stephen C. Grubb, D. Walton, V. Philip +8 more
2017Nucleic Acids Res.67 citations Open access
Semantic Scholar
Natural genetic variation determines microglia heterogeneity in wild-derived mouse models of Alzheimer’s disease
H. Yang, Kristen D. Onos, Kwangbom Choi, Kelly J. Keezer +3 more
2020bioRxiv66 citations Open access
Semantic Scholar
Bayesian model selection reveals biological origins of zero inflation in single-cell transcriptomics
Kwangbom Choi, Yang Chen, Daniel A. Skelly, G. Churchill
2020Genome Biology65 citations Open access
Semantic Scholar
Naive Pluripotent Stem Cells Exhibit Phenotypic Variability that Is Driven by Genetic Variation
Daniel Ortmann, Stephanie E. Brown, A. Czechanski, Selcan Aydin +15 more
2020Cell Stem Cell49 citations Open access
Semantic Scholar
MAPPING THE EFFECTS OF GENETIC VARIATION ON CHROMATIN STATE AND GENE EXPRESSION REVEALS LOCI THAT CONTROL GROUND STATE PLURIPOTENCY
Daniel A. Skelly, A. Czechanski, Candice Byers, Selcan Aydin +21 more
2020Cell Stem Cell43 citations Open access
Semantic Scholar
Anti-integrin αv therapy improves cardiac fibrosis after myocardial infarction by blunting cardiac PW1+ stromal cells
M. Bouvet, O. Claude, M. Roux, Daniel A. Skelly +15 more
2020Scientific Reports33 citations Open access
Semantic Scholar
Population Genomics of Intron Splicing in 38 Saccharomyces cerevisiae Genome Sequences
Daniel A. Skelly, James Ronald, Caitlin F. Connelly, J. Akey
2009Genome Biology and Evolution24 citations Open access
Semantic Scholar
Sporadic, Global Linkage Disequilibrium Between Unlinked Segregating Sites
Daniel A. Skelly, P. Magwene, Eric A. Stone
2015Genetics23 citations Open access
Semantic Scholar
Out of Alaska: morphological diversity within the genus Eurytemora from its ancestral Alaskan range (Crustacea, Copepoda)
S. Dodson, Daniel A. Skelly, C. Lee
2010Hydrobiologia22 citations
Semantic Scholar
2μ plasmid in Saccharomyces species and in Saccharomyces cerevisiae.
Pooja K. Strope, S. Kozmin, Daniel A. Skelly, P. Magwene +2 more
2015FEMS Yeast Research21 citations Open access
Semantic Scholar
Genetic dissection of the pluripotent proteome through multi-omics data integration
Selcan Aydin, D. Pham, Tian Zhang, Gregory R. Keele +9 more
2022bioRxiv14 citations Open access
Semantic Scholar
Mitochondrial Genome Variation Affects Multiple Respiration and Nonrespiration Phenotypes in Saccharomyces cerevisiae
Sriram Vijayraghavan, S. Kozmin, Pooja K. Strope, Daniel A. Skelly +5 more
2018Genetics14 citations Open access
Semantic Scholar
RNA viruses, M satellites, chromosomal killer genes, and killer/nonkiller phenotypes in the 100-genomes S. cerevisiae strains
Sriram Vijayraghavan, S. Kozmin, Pooja K. Strope, Daniel A. Skelly +3 more
2023G313 citations Open access
Semantic Scholar
Population genomics and transcriptional consequences of regulatory motif variation in globally diverse Saccharomyces cerevisiae strains.
Caitlin F. Connelly, Daniel A. Skelly, Maitreya J. Dunham, J. Akey
2013Molecular biology and evolution12 citations Open access
Semantic Scholar
Reference Trait Analysis Reveals Correlations Between Gene Expression and Quantitative Traits in Disjoint Samples
Daniel A. Skelly, N. Raghupathy, R. F. Robledo, J. Graber +1 more
2018Genetics11 citations Open access
Semantic Scholar
Known mutator alleles do not markedly increase mutation rate in clinical Saccharomyces cerevisiae strains
Daniel A. Skelly, P. Magwene, Brianna Meeks, H. A. Murphy
2017Proceedings of the Royal Society of London. Biological Sciences9 citations Open access
Semantic Scholar
Genetic context modulates aging and degeneration in the murine retina
Olivia J. Marola, Michael Maclean, Travis L. Cossette, Cory A. Diemler +4 more
2024bioRxiv8 citations Open access
Semantic Scholar
Genetic control of the pluripotency epigenome determines differentiation bias in mouse embryonic stem cells
Candice Byers, Catrina Spruce, Haley J. Fortin, Ellen I Hartig +5 more
2021EMBO Journal7 citations Open access
Semantic Scholar
Single cell transcriptional profiling reveals cellular diversity, communication, and sexual dimorphism in the mouse heart
Daniel A. Skelly, Galen T. Squiers, Micheal A. McLellan, M. Bolisetty +3 more
2017bioRxiv7 citations Open access
Semantic Scholar
CLARA: A web portal for interactive exploration of the cardiovascular cellular landscape in health and disease
M. Dona, Ian S Hsu, Thushara S. Rathnayake, G. Farrugia +4 more
2021bioRxiv6 citations Open access
Semantic Scholar
Genetic variation influences pluripotent ground state stability in mouse embryonic stem cells through a hierarchy of molecular phenotypes
Daniel A. Skelly, A. Czechanski, Candice Byers, Selcan Aydin +19 more
2019bioRxiv5 citations Open access
Semantic Scholar
Population perspectives on functional genomic variation in yeast.
Daniel A. Skelly, P. Magwene
2016Briefings in Functional Genomics5 citations Open access
Semantic Scholar
Enhlink infers distal and context-specific enhancer-promoter linkages
Olivier B. Poirion, Wulin Zuo, Catrina Spruce, S. Daigle +5 more
2023bioRxiv4 citations Open access
Semantic Scholar
Improved mouse models and advanced genetic and genomic technologies for the study of neutrophils
V. Hosur, Daniel A. Skelly, Christopher Francis, B. Low +5 more
2020Drug Discovery Today4 citations Open access
Semantic Scholar
Ex uno, plures–From One Tissue to Many Cells: A Review of Single-Cell Transcriptomics in Cardiovascular Biology
Elvira Forte, Micheal A. McLellan, Daniel A. Skelly, N. Rosenthal
2021International Journal of Molecular Sciences3 citations Open access
Semantic Scholar
Imputation of 3D genome structure by genetic–epigenetic interaction modeling in mice
Lauren Kuffler, Daniel A. Skelly, A. Czechanski, Haley J. Fortin +4 more
2024bioRxiv2 citations Open access
Semantic Scholar
Genetic control of pluripotency epigenome determines differentiation bias in mouse embryonic stem cells
Candice Byers, Catrina Spruce, Haley J. Fortin, A. Czechanski +4 more
2021bioRxiv2 citations Open access
Semantic Scholar
Private haplotype barcoding facilitates inexpensive high-resolution genotyping of multiparent crosses
Daniel A. Skelly, John H. McCusker, Eric A. Stone, P. Magwene
2017bioRxiv2 citations Open access
Semantic Scholar
Chromosome X dosage modulates development of aneuploidy in genetically diverse mouse embryonic stem cells
Alexander Stanton, Selcan Aydin, Daniel A. Skelly, Tracy McGarr +14 more
2025bioRxiv1 citations Open access
Semantic Scholar
The effect of known mutator alleles in a cluster of clinical Saccharomyces cerevisiae strains
Daniel A. Skelly, P. Magwene, Brianna Meeks, H. A. Murphy
2016bioRxiv1 citations Open access
Semantic Scholar
Author response: Proteomic and transcriptomic profiling reveal different aspects of aging in the kidney
Yuka Takemon, J. Chick, Isabela Gerdes Gyuricza, Daniel A. Skelly +4 more
20210 citations Open access
Semantic Scholar
Leveraging mouse genetic diversity to investigate the role of brain myeloid cells in Alzheimer’s disease
H. Yang, Kristen D. Onos, Kwangbom Choi, Kelly J. Keezer +10 more
2020Alzheimer's & Dementia0 citations Open access
Semantic Scholar
The Fourth Postdoc Research Day Week
H. Yang, Kristen D. Onos, Kwangbom Choi, Kelly J. Keezer +6 more
20200 citations
Semantic Scholar
Publisher Correction: Bayesian model selection reveals biological origins of zero inflation in single-cell transcriptomics
Kwangbom Choi, Yang Chen, Daniel A. Skelly, G. Churchill
2020Genome Biology0 citations Open access
Semantic Scholar
phenotypic diversity in budding yeast Integrative phenomics reveals insight into the structure of Material Supplemental
Daniel A. Skelly, G. Merrihew, Michael Riffle, Caitlin F. Connelly +14 more
20130 citations
Semantic Scholar
P1) Technology Development in a Multidisciplinary Center
T. Davis, Daniel A. Skelly, G. Merrihew, Michael Riffle +11 more
20120 citations
Semantic Scholar
Patterns and determinants of variation in functional genomics phenotypes in the yeast Saccharomyces cerevisiae
Daniel A. Skelly
20120 citations
Semantic Scholar
YEARS ON Out of Alaska : morphological diversity within the genus
S. Dodson, Daniel A. Skelly, C. Lee
20100 citations
Semantic Scholar
The Mouseion at the JAXlibrary The Mouseion at the JAXlibrary
Jing-Dong J. Han, Yuka Takemon, J. Chick, I. Gyuricza +5 more
0 citations
Semantic Scholar

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