Skip to content

Home Search Authors Pakistan News Saved

SciRah

SciRah does not host or store research papers. Results come live from free, official scholarly APIs, and every paper links back to its original source.

Data sources

OpenAlex
Semantic Scholar
Crossref
CORE
arXiv
PubMed

Privacy policy Terms of service

Maitreya J. Dunham · SciRah

Researcher profile · Semantic Scholar

Maitreya J. Dunham

Share profile

Maitreya J. Dunham — researcher profile on SciRah

h-index: 45
Works: 163
Citations: 11K

Most-cited papers

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
D. Bickhart, B. Rosen, S. Koren, Brian L. Sayre +26 more
2017Nature Genetics580 citations Open access
Semantic Scholar
Variant Interpretation: Functional Assays to the Rescue.
Lea M. Starita, N. Ahituv, Maitreya J. Dunham, J. Kitzman +4 more
2017American Journal of Human Genetics367 citations Open access
Semantic Scholar
Loss of Heterozygosity Drives Adaptation in Hybrid Yeast
Caiti S. Smukowski Heil, Christopher G. DeSevo, Dave A. Pai, Cheryl M. Tucker +2 more
2017Molecular biology and evolution116 citations Open access
Semantic Scholar
The Fitness Consequences of Aneuploidy Are Driven by Condition-Dependent Gene Effects
Anna B Sunshine, Celia Payen, Giang T. Ong, I. Liachko +2 more
2015PLoS Biology104 citations Open access
Semantic Scholar
Massively parallel characterization of CYP2C9 variant enzyme activity and abundance
Clara J. Amorosi, Melissa A. Chiasson, M. McDonald, Lai H. Wong +6 more
2021bioRxiv93 citations Open access
Semantic Scholar
Evolution of protein phosphorylation across 18 fungal species
R. Studer, Ricard A. Rodríguez-Mias, Kelsey M. Haas, Joanne I. Hsu +11 more
2016Science93 citations
Semantic Scholar
Experimental Evolution Reveals Favored Adaptive Routes to Cell Aggregation in Yeast
E. Hope, Clara J. Amorosi, Aaron W. Miller, Kolena Dang +2 more
2016Genetics80 citations Open access
Semantic Scholar
A polyploid admixed origin of beer yeasts derived from European and Asian wine populations
Justin C. Fay, Ping-Huai Liu, Giang T. Ong, Maitreya J. Dunham +4 more
2018bioRxiv77 citations Open access
Semantic Scholar
High-Throughput Identification of Adaptive Mutations in Experimentally Evolved Yeast Populations
Celia Payen, Anna B Sunshine, Giang T. Ong, Jamie L. Pogachar +2 more
2016PLoS Genetics75 citations Open access
Semantic Scholar
The dynamic three-dimensional organization of the diploid yeast genome
Seungsoo Kim, I. Liachko, D. Brickner, Kate B. Cook +4 more
2016bioRxiv64 citations Open access
Semantic Scholar
Methods in yeast genetics and genomics : a Cold Spring Harbor Laboratory course manual
Maitreya J. Dunham, Marc R. Gartenberg, Grant W. Brown
201550 citations
Semantic Scholar
Interrogation of CYP2D6 Structural Variant Alleles Improves the Correlation Between CYP2D6 Genotype and CYP2D6‐Mediated Metabolic Activity
R. Dalton, Seung‐been Lee, Katrina G. Claw, B. Prasad +14 more
2019Clinical and Translational Science48 citations Open access
Semantic Scholar
A modified fluctuation assay reveals a natural mutator phenotype that drives mutation spectrum variation within Saccharomyces cerevisiae
Peng-Yao Jiang, Anja R. Ollodart, Vidha Sudhesh, A. J. Herr +2 more
2021bioRxiv46 citations Open access
Semantic Scholar
Characterization of a panARS-based episomal vector in the methylotrophic yeast Pichia pastoris for recombinant protein production and synthetic biology applications
Andrea Camattari, Amelia Goh, Lian-Yee Yip, A. Tan +6 more
2016Microbial Cell Factories46 citations Open access
Semantic Scholar
Origin-Dependent Inverted-Repeat Amplification: Tests of a Model for Inverted DNA Amplification
B. J. Brewer, Celia Payen, S. C. Di Rienzi, M. Higgins +3 more
2015PLoS Genetics45 citations Open access
Semantic Scholar
Expression and Functional Characterization of Breast Cancer-Associated Cytochrome P450 4Z1 in Saccharomyces cerevisiae
M. McDonald, Sutapa Ray, Clara J. Amorosi, K. Sitko +8 more
2017Drug Metabolism And Disposition41 citations Open access
Semantic Scholar
Fitness benefits of loss of heterozygosity in Saccharomyces hybrids
Samuel M. Lancaster, Celia Payen, Caiti S. Smukowski Heil, Maitreya J. Dunham
2018bioRxiv39 citations Open access
Semantic Scholar
Evolutionary engineering of a wine yeast strain revealed a key role of inositol and mannoprotein metabolism during low-temperature fermentation
Maria López-Malo, Estéfani García-Ríos, B. Melgar, Monica R. Sanchez +2 more
2015BMC Genomics39 citations Open access
Semantic Scholar
Identification of a novel interspecific hybrid yeast from a metagenomic spontaneously inoculated beer sample using Hi-C
C. Heil, J. Burton, I. Liachko, A. Friedrich +6 more
2017bioRxiv35 citations Open access
Semantic Scholar
Neocentromeres Provide Chromosome Segregation Accuracy and Centromere Clustering to Multiple Loci along a Candida albicans Chromosome
Laura S. Burrack, Hannah F Hutton, Kathleen J Matter, Shelly Applen Clancey +9 more
2016PLoS Genetics35 citations Open access
Semantic Scholar
The hidden complexity of Mendelian traits across yeast natural populations
Jing Hou, Anastasie Sigwalt, Téo Fournier, David Pflieger +4 more
2016Cell Reports35 citations Open access
Semantic Scholar
From genotype to phenotype with 1,086 near telomere-to-telomere yeast genomes
V. Loegler, Pia Thiele, É. Teyssonnière, Andreas Tsouris +8 more
2025Nature34 citations Open access
Semantic Scholar
The environmental stress response causes ribosome loss in aneuploid yeast cells
Allegra Terhorst, A. Sandikci, A. Keller, C. Whittaker +2 more
2020Proceedings of the National Academy of Sciences of the United States of America34 citations Open access
Semantic Scholar
Functional interpretation, cataloging, and analysis of 1,341 glucose-6-phosphate dehydrogenase variants
Renee C. Geck, Nicholas R. Powell, Maitreya J. Dunham
2023American Journal of Human Genetics33 citations Open access
Semantic Scholar
Temperature preference can bias parental genome retention during hybrid evolution
Caiti S. Smukowski Heil, Christopher R. L. Large, K. Patterson, A. S. Hickey +2 more
2019PLoS Genetics32 citations Open access
Semantic Scholar
Aneuploidy shortens replicative lifespan in Saccharomyces cerevisiae
Anna B Sunshine, Giang T. Ong, D. Nickerson, Daniel T. Carr +6 more
2016Aging Cell30 citations Open access
Semantic Scholar
Phased polyploid genomes provide deeper insight into the multiple origins of domesticated Saccharomyces cerevisiae beer yeasts.
O. Saada, Andreas Tsouris, Christopher R. L. Large, A. Friedrich +2 more
2022Current Biology29 citations Open access
Semantic Scholar
Comprehensive Analysis of the SUL1 Promoter of Saccharomyces cerevisiae
Matthew S. Rich, Celia Payen, Alan F. Rubin, Giang T. Ong +4 more
2016Genetics28 citations Open access
Semantic Scholar
Transposable Element Mobilization in Interspecific Yeast Hybrids
Caiti S. Smukowski Heil, K. Patterson, A. S. Hickey, E. Alcântara +1 more
2020bioRxiv27 citations Open access
Semantic Scholar
Genomic stability and adaptation of beer brewing yeasts during serial repitching in the brewery
Christopher R. L. Large, Noah A. Hanson, Andreas Tsouris, O. Saada +9 more
2020bioRxiv26 citations Open access
Semantic Scholar
Differential paralog divergence modulates genome evolution across yeast species
Monica R. Sanchez, Aaron W. Miller, I. Liachko, Anna B Sunshine +8 more
2017PLoS Genetics25 citations Open access
Semantic Scholar
Transposon insertional mutagenesis in Saccharomyces uvarum reveals trans-acting effects influencing species-dependent essential genes
Monica R. Sanchez, Celia Payen, F. Cheong, Blake T. Hovde +6 more
2017bioRxiv24 citations Open access
Semantic Scholar
Measuring Pharmacogene Variant Function at Scale Using Multiplexed Assays.
Renee C. Geck, G. Boyle, Clara J. Amorosi, D. Fowler +1 more
2021Annual Review of Pharmacology and Toxicology22 citations Open access
Semantic Scholar
Single-molecule sequencing and conformational capture enable de novo mammalian reference genomes
D. Bickhart, B. Rosen, S. Koren, Brian L. Sayre +25 more
2016bioRxiv22 citations Open access
Semantic Scholar
Applying multiplex assays to understand variation in pharmacogenes
Melissa A. Chiasson, Maitreya J. Dunham, A. Rettie, D. Fowler
2019Clinical pharmacology and therapy17 citations Open access
Semantic Scholar
A combination of transcription factors mediates inducible interchromosomal contacts
Seungsoo Kim, Maitreya J. Dunham, J. Shendure
2019eLife14 citations Open access
Semantic Scholar
Chemostat Culture for Yeast Physiology and Experimental Evolution.
Maitreya J. Dunham, Emily O. Kerr, Aaron W. Miller, Celia Payen
2017Cold Spring Harbor Protocols14 citations Open access
Semantic Scholar
Pacybara: accurate long-read sequencing for barcoded mutagenized allelic libraries
Jochen Weile, Gabrielle Ferra, Gabriel E. Boyle, Sriram Pendyala +10 more
2023bioRxiv11 citations Open access
Semantic Scholar
Effect of the Ala234Asp replacement in mitochondrial branched-chain amino acid aminotransferase on the production of BCAAs and fusel alcohols in yeast
Jirasin Koonthongkaew, Yoichi Toyokawa, M. Ohashi, Christopher R. L. Large +2 more
2020Applied Microbiology and Biotechnology10 citations Open access
Semantic Scholar
A multiplex culture system for the long-term growth of fission yeast cells
C. Callens, N. Coelho, Aaron W. Miller, M. Sananes +3 more
2017Yeast10 citations Open access
Semantic Scholar
High Throughput Analyses of Budding Yeast ARSs Reveal New DNA Elements Capable of Conferring Centromere-Independent Plasmid Propagation
Timothy Hoggard, I. Liachko, Cassaundra Burt, Troy Meikle +4 more
2016G3: Genes, Genomes, Genetics10 citations Open access
Semantic Scholar
Template switching between the leading and lagging strands at replication forks generates inverted copy number variants through hairpin-capped extrachromosomal DNA
Rebecca Martin, Claudia Y. Espinoza, Christopher R. L. Large, Joshua Rosswork +9 more
2024PLoS Genetics8 citations Open access
Semantic Scholar
A unifying model that explains the origins of human inverted copy number variants
B. J. Brewer, Maitreya J. Dunham, M. K. Raghuraman
2023bioRxiv8 citations Open access
Semantic Scholar
Caffeine-tolerant mutations selected through an at-home yeast experimental evolution teaching lab
Naomi G. Moresi, Renee C. Geck, R. Skophammer, Dennis Godin +2 more
2023bioRxiv8 citations Open access
Semantic Scholar
Multiplexing Mutation Rate Assessment: Determining Pathogenicity of Msh2 Variants in S. cerevisiae
Anja R. Ollodart, Chiann-Ling C. Yeh, Aaron W. Miller, B. Shirts +2 more
2020bioRxiv8 citations Open access
Semantic Scholar
Phenotypic and Genotypic Consequences of CRISPR/Cas9 Editing of the Replication Origins in the rDNA of Saccharomyces cerevisiae
Joseph C. Sanchez, Anja R. Ollodart, Christopher R. L. Large, Courtnee A. Clough +8 more
2019Genetics8 citations Open access
Semantic Scholar
Temperature preference biases parental genome retention during hybrid evolution
C. Heil, Christopher R. L. Large, K. Patterson, Maitreya J. Dunham
2018bioRxiv8 citations Open access
Semantic Scholar
yEvo: experimental evolution in high school classrooms selects for novel mutations that impact clotrimazole resistance in Saccharomyces cerevisiae
M. Taylor, R. Skophammer, Alexa R. Warwick, Renee C. Geck +6 more
2022G37 citations Open access
Semantic Scholar
Assembly of a Mini-Chemostat Array.
Aaron W. Miller, Emily O. Kerr, Maitreya J. Dunham
2017Cold Spring Harbor Protocols7 citations
Semantic Scholar
Empirical determinants of adaptive mutations in yeast experimental evolution
Celia Payen, Anna B Sunshine, Giang T. Ong, Jamie L. Pogachar +2 more
2015bioRxiv7 citations Open access
Semantic Scholar

Frequent co-authors

Invite them to SciRah by sharing their profile.

I. Liachko×10
Invite
I. Liachko — researcher profile on SciRah
Celia Payen×8
Invite
Celia Payen — researcher profile on SciRah
Christopher R. L. Large×8
Invite
Christopher R. L. Large — researcher profile on SciRah
Giang T. Ong×7
Invite
Giang T. Ong — researcher profile on SciRah

Aaron W. Miller

×7

Invite

Aaron W. Miller — researcher profile on SciRah

Invite

J. Shendure — researcher profile on SciRah

Invite

D. Fowler — researcher profile on SciRah

Anna B Sunshine×5

Invite

Anna B Sunshine — researcher profile on SciRah

Clara J. Amorosi×5

Invite

Clara J. Amorosi — researcher profile on SciRah

J. Schacherer×5

Invite

J. Schacherer — researcher profile on SciRah

Caiti S. Smukowski Heil×4

Invite

Caiti S. Smukowski Heil — researcher profile on SciRah

Invite

A. Rettie — researcher profile on SciRah