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D. Cafiso · SciRah

Researcher profile · Semantic Scholar

D. Cafiso

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D. Cafiso — researcher profile on SciRah

h-index: 53
Works: 253
Citations: 8,615

Most-cited papers

Solution structure of the ESCRT-I complex by small-angle X-ray scattering, EPR, and FRET spectroscopy
E. Bouřa, B. Różycki, Dawn Z. Herrick, Hoi-Sung Chung +5 more
2011Proceedings of the National Academy of Sciences of the United States of America113 citations Open access
Semantic Scholar
Synaptotagmin-1 binds to PIP2-containing membrane but not to SNAREs at physiological ionic strength
Yongsoo Park, J. Seo, Alicia M Fraind, Á. Pérez-Lara +9 more
2015Nature Structural &Molecular Biology105 citations Open access
Semantic Scholar
Solution Structure of the ESCRT-I and -II Supercomplex: Implications for Membrane Budding and Scission
E. Bouřa, B. Różycki, Hoi-Sung Chung, Dawn Z. Herrick +5 more
2012Structure93 citations Open access
Semantic Scholar
PtdInsP2 and PtdSer cooperate to trap synaptotagmin-1 to the plasma membrane in the presence of calcium
Á. Pérez-Lara, Anusa Thapa, Sarah B. Nyenhuis, David A. Nyenhuis +5 more
2016eLife90 citations Open access
Semantic Scholar
Distance Measurement on an Endogenous Membrane Transporter in E. coli Cells and Native Membranes Using EPR Spectroscopy
B. Joseph, A. Sikora, E. Bordignon, G. Jeschke +2 more
2015Angewandte Chemie79 citations Open access
Semantic Scholar
Identifying and Quantitating Conformational Exchange in Membrane Proteins Using Site-Directed Spin Labeling
D. Cafiso
2014Accounts of Chemical Research68 citations Open access
Semantic Scholar
Structure of the Ebola virus envelope protein MPER/TM domain and its interaction with the fusion loop explains their fusion activity
Jinwoo Lee, David A. Nyenhuis, E. Nelson, D. Cafiso +2 more
2017Proceedings of the National Academy of Sciences of the United States of America64 citations Open access
Semantic Scholar
Ligand induced conformational changes of a membrane transporter in E. coli cells observed with DEER/PELDOR
B. Joseph, A. Sikora, D. Cafiso
2016Journal of the American Chemical Society61 citations Open access
Semantic Scholar
Ebola virus glycoprotein interacts with cholesterol to enhance membrane fusion and cell entry
Jinwoo Lee, Alex J. B. Kreutzberger, Laura Odongo, E. Nelson +6 more
2021Nature Structural & Molecular Biology57 citations Open access
Semantic Scholar
Structural and dynamic studies of the transcription factor ERG reveal DNA binding is allosterically autoinhibited
M. Regan, P. Horanyi, E. Pryor, J. Sarver +2 more
2013Proceedings of the National Academy of Sciences of the United States of America57 citations Open access
Semantic Scholar
Phosphatidylinositol 4,5 bisphosphate alters Synaptotagmin 1 Membrane Docking and Drives Opposing Bilayers Closer Together
Weiwei Kuo, Dawn Z. Herrick, D. Cafiso
2011Biochemistry55 citations Open access
Semantic Scholar
Monomeric TonB and the Ton box are required for the Formation of a High-Affinity Transporter-TonB Complex
D. Freed, S. Lukasik, A. Sikora, Audrey Mokdad +1 more
2013Biochemistry47 citations Open access
Semantic Scholar
In-situ observation of conformational dynamics and protein-ligand/substrate interactions in outer membrane proteins with DEER/PELDOR spectroscopy
B. Joseph, Eva A. Jaumann, A. Sikora, K. Barth +2 more
2019Nature Protocols44 citations Open access
Semantic Scholar
Munc18-1 and the Syntaxin-1 N-terminus Regulate Open-Closed States in a t-SNARE complex
Damian Dawidowski, D. Cafiso
2016Structure40 citations Open access
Semantic Scholar
Complexin Binding to Membranes and Acceptor t-SNAREs Explains Its Clamping Effect on Fusion.
Rafal Zdanowicz, Alex J. B. Kreutzberger, B. Liang, V. Kiessling +2 more
2017Biophysical Journal37 citations Open access
Semantic Scholar
Allosteric control of syntaxin 1a by Munc18-1: characterization of the open and closed conformations of syntaxin.
Damian Dawidowski, D. Cafiso
2013Biophysical Journal32 citations Open access
Semantic Scholar
Molecular origin of EPR lineshapes on β–barrel membrane proteins: local solvation environment modulates spin label configuration
D. Freed, Ali K. Khan, P. Horanyi, D. Cafiso
2011Biochemistry32 citations Open access
Semantic Scholar
Unlocking Biradical Character in Diborepins.
Kimberly K. Hollister, A. Molino, Nula Jones, VuongVy V. Le +4 more
2024Journal of the American Chemical Society30 citations
Semantic Scholar
A molecular mechanism for calcium/synaptotagmin-triggered exocytosis
V. Kiessling, Alex J. B. Kreutzberger, Binyong Liang, Sarah B. Nyenhuis +4 more
2018Nature Structural & Molecular Biology27 citations Open access
Semantic Scholar
The Juxtamembrane Linker of Full-length Synaptotagmin 1 Controls Oligomerization and Calcium-dependent Membrane Binding*
Bin Lu, V. Kiessling, L. Tamm, D. Cafiso
2014Journal of Biological Chemistry27 citations Open access
Semantic Scholar
Phosphatidylinositol 4,5 bisphosphate controls the cis and trans interactions of synaptotagmin 1
Sarah B. Nyenhuis, Anusa Thapa, D. Cafiso
2019bioRxiv26 citations Open access
Semantic Scholar
The SNARE Motif of Synaptobrevin Exhibits an Aqueous–Interfacial Partitioning That Is Modulated by Membrane Curvature
B. Liang, Damian Dawidowski, J. Ellena, L. Tamm +1 more
2014Biochemistry26 citations Open access
Semantic Scholar
Ligand-Induced Structural Changes in the Escherichia coli Ferric Citrate Transporter Reveal Modes for Regulating Protein-Protein Interactions
Audrey Mokdad, Dawn Z. Herrick, Aliza Kahn, Emily A Andrews +2 more
2012Journal of Molecular Biology26 citations Open access
Semantic Scholar
A Dynamic Protein-Protein Coupling Between the TonB-dependent Transporter FhuA and TonB
J. Sarver, Michael Zhang, Li-Shan Liu, David A. Nyenhuis +1 more
2018Biochemistry25 citations Open access
Semantic Scholar
TRIM5α SPRY/coiled-coil interactions optimize avid retroviral capsid recognition
Marcin D. Roganowicz, Sevnur Komurlu, S. Mukherjee, Jacek Plewka +8 more
2017PLoS Pathogens25 citations Open access
Semantic Scholar
Efficient water oxidation kinetics and enhanced electron transport in Li-doped TiO2 nanotube photoanodes
Lok-Kun Tsui, Yin Xu, Damian Dawidowski, D. Cafiso +1 more
201624 citations
Semantic Scholar
Conserved arginine residues in synaptotagmin 1 regulate fusion pore expansion through membrane contact
Sarah B. Nyenhuis, Nakul Karandikar, V. Kiessling, Alex J. B. Kreutzberger +4 more
2020Nature Communications22 citations Open access
Semantic Scholar
Synaptic vesicle fusion: today and beyond
N. Brose, A. Brunger, D. Cafiso, E. Chapman +12 more
2019Nature Structural & Molecular Biology22 citations
Semantic Scholar
Membrane thickness varies around the circumference of the transmembrane protein BtuB.
J. Ellena, Pawel Lackowicz, H. Mongomery, D. Cafiso
2011Biophysical Journal19 citations Open access
Semantic Scholar
Evidence for the Supramolecular Organization of a Bacterial Outer-Membrane Protein from In-Vivo Pulse EPR Spectroscopy
David A. Nyenhuis, Thushani D Nilaweera, Jessica K. Niblo, N. Q. Nguyen +2 more
2020Journal of the American Chemical Society17 citations Open access
Semantic Scholar
Native Cell Environment Constrains Loop Structure in the Escherichia coli Cobalamin Transporter BtuB.
David A. Nyenhuis, Thushani D Nilaweera, D. Cafiso
2020Biophysical Journal16 citations Open access
Semantic Scholar
Non-native metal ion reveals the role of electrostatics in Synaptotagmin 1-membrane interactions
S. Katti, Sarah B. Nyenhuis, Bin Her, Atul K. Srivastava +4 more
2017Biochemistry15 citations Open access
Semantic Scholar
Structural intermediates observed only in intact Escherichia coli indicate a mechanism for TonB-dependent transport
Thushani D Nilaweera, David A. Nyenhuis, D. Cafiso
2021bioRxiv14 citations Open access
Semantic Scholar
Exploration of the TRIM Fold of MuRF1 Using EPR Reveals a Canonical Antiparallel Structure and Extended COS-Box
M. Stevens, B. Franke, Katarzyna A. Skorupka, D. Cafiso +3 more
2019Journal of Molecular Biology13 citations Open access
Semantic Scholar
The N-terminal Domain of a TonB-dependent Transporter Undergoes a Reversible Stepwise Denaturation
Ricardo H. Flores Jiménez, D. Cafiso
2012Biochemistry13 citations Open access
Semantic Scholar
Allosteric Signaling Is Bidirectional in an Outer-Membrane Transport Protein.
A. Sikora, B. Joseph, Morgan M. Matson, Jacob Staley +1 more
2016Biophysical Journal12 citations Open access
Semantic Scholar
Partitioning of Synaptotagmin I C2 Domains between Liquid-Ordered and Liquid-Disordered Inner Leaflet Lipid Phases
Chen Wan, V. Kiessling, D. Cafiso, L. Tamm
2011Biochemistry12 citations Open access
Semantic Scholar
Disulfide chaperone knock-outs enable in-vivo double spin-labeling of an outer-membrane transporter
Thushani D Nilaweera, David A. Nyenhuis, R. Nakamoto, D. Cafiso
2019bioRxiv11 citations Open access
Semantic Scholar
Intermediate steps in the formation of neuronal SNARE complexes
Sonja Pribicevic, Abigail C. Graham, D. Cafiso, Á. Pérez-Lara +1 more
2024Journal of Biological Chemistry8 citations
Semantic Scholar
Partial Metal Ion Saturation of C2 Domains Primes Synaptotagmin 1-Membrane Interactions.
S. Katti, Sarah B. Nyenhuis, Bin Her, D. Cafiso +1 more
2020Biophysical Journal7 citations Open access
Semantic Scholar
Hybrid Refinement of Heterogeneous Conformational Ensembles using Spectroscopic Data
J. Hays, D. Cafiso, P. Kasson
2019bioRxiv7 citations Open access
Semantic Scholar
Closure of the Cytoplasmic Gate Formed by TM5 and TM11 during Transport in the Oxalate/Formate Exchanger from Oxalobacter formigenes
O. Iyalomhe, Dawn Z. Herrick, D. Cafiso, P. Maloney
2014Biochemistry7 citations Open access
Semantic Scholar
Lipid and Membrane Mimetic Environments Modulate Spin Label Side Chain Configuration in the Outer Membrane Protein A
Ricardo H. Flores Jiménez, D. Freed, D. Cafiso
2011Journal of Physical Chemistry B6 citations Open access
Semantic Scholar
Complexin-1 and synaptotagmin-1 compete for binding sites on membranes containing PtdInsP2.
Qian Liang, Akosua P. Ofosuhene, V. Kiessling, B. Liang +3 more
2022Biophysical Journal5 citations Open access
Semantic Scholar
The Allosteric Modulation of Syntaxin 1A by Munc18: Characterization of the Open and Closed Conformations of Syntaxin
Damian Dawidowski, D. Cafiso
20123 citations Open access
Semantic Scholar
γ-Aminobutyric Acid Induced Conformational Change in GABAAR Measured by Pulsed Electron Paramagnetic Resonance
Yinghui Zhang, Y. Jounaidi, J. Sarver, Xiaojuan Zhou +2 more
20142 citations Open access
Semantic Scholar
Taking the pulse of protein interactions by EPR spectroscopy.
D. Cafiso
2012Biophysical Journal2 citations Open access
Semantic Scholar
A disulfide chaperone knockout facilitates spin labeling and pulse EPR spectroscopy of outer membrane transporters
V. Wimalasiri, Kinga Jurczak, Monika K Wieliniec, Thushani D Nilaweera +2 more
2023Protein Science1 citations Open access
Semantic Scholar
Partial metal ion saturation of C2 domains primes Syt1-membrane interactions
S. Katti, Sarah B. Nyenhuis, Bin Her, D. Cafiso +1 more
20191 citations Open access
Semantic Scholar
Acknowledgment of Guest Editors, 2019
A. Accardi, T. Ackerman, David J. Adams, R. Adolphs +214 more
2019Proceedings of the National Academy of Sciences of the United States of America1 citations Open access
Semantic Scholar

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