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J. Coon · SciRah

Researcher profile · Semantic Scholar

J. Coon

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J. Coon — researcher profile on SciRah

h-index: 81
Works: 379
Citations: 28K

Most-cited papers

Large-Scale Multi-omic Analysis of COVID-19 Severity
K. Overmyer, Evgenia Shishkova, I. J. Miller, J. Balnis +25 more
2020medRxiv552 citations Open access
Semantic Scholar
Global detection of human variants and isoforms by deep proteome sequencing
Pavel Sinitcyn, Alicia L. Richards, Robert J. Weatheritt, Dain R. Brademan +8 more
2023Nature Biotechnology169 citations Open access
Semantic Scholar
High-fat diet disrupts REG3γ and gut microbial rhythms promoting metabolic dysfunction
Katya Frazier, Amal Kambal, Elizabeth Zale, J. Pierre +15 more
2022Cell Host and Microbe115 citations Open access
Semantic Scholar
Defining mitochondrial protein functions through deep multi-omic profiling
Jarred W. Rensvold, Evgenia Shishkova, Yuriy Sverchkov, I. J. Miller +22 more
2022Nature97 citations Open access
Semantic Scholar
Broad and thematic remodeling of the surfaceome and glycoproteome on isogenic cells transformed with driving proliferative oncogenes
K. Leung, G. Wilson, Lisa L. Kirkemo, N. Riley +2 more
2020Proceedings of the National Academy of Sciences of the United States of America76 citations Open access
Semantic Scholar
The genetic basis of aneuploidy tolerance in wild yeast
James Hose, Leah E. Escalante, Katie J. Clowers, H. A. Dutcher +5 more
2020eLife74 citations Open access
Semantic Scholar
Quantitative Shotgun Proteome Analysis by Direct Infusion
J. Meyer, N. Niemi, D. Pagliarini, J. Coon
2020Nature Methods72 citations Open access
Semantic Scholar
Assessing the Viability of Recovery of Hydroxycinnamic Acids from Lignocellulosic Biorefinery Alkaline Pretreatment Waste Streams
S. Karlen, P. Fasahati, Mona Mazaheri, José Serate +19 more
2020ChemSusChem65 citations Open access
Semantic Scholar
Mass spectrometry proteomics reveals a function for mammalian CALCOCO1 in MTOR-regulated selective autophagy
Jonathan A. Stefely, Yu Zhang, Elyse C. Freiberger, Nicholas W. Kwiecien +10 more
2020Autophagy55 citations Open access
Semantic Scholar
Three-dimensional structure determination of protein complexes using matrix-landing mass spectrometry
M. Westphall, Kenneth W. Lee, Austin Z. Salome, J. Lodge +2 more
2022Nature Communications52 citations Open access
Semantic Scholar
A large-scale genome-lipid association map guides lipid identification
V. Linke, K. Overmyer, I. J. Miller, Dain R. Brademan +16 more
2020Nature Metabolism51 citations Open access
Semantic Scholar
Spatial snapshots of amyloid precursor protein intramembrane processing via early endosome proteomics
Hankum Park, Frances V. Hundley, Qing Yu, K. Overmyer +8 more
2022Nature Communications50 citations Open access
Semantic Scholar
Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut
Qi-Jun Zhang, V. Linke, K. Overmyer, L. Traeger +26 more
2023Nature Microbiology48 citations Open access
Semantic Scholar
Severe COVID-19 Shares a Common Neutrophil Activation Signature with Other Acute Inflammatory States
Lena F. Schimke, A. Marques, G. Baiocchi, Caroline Aliane de Souza Prado +24 more
2021bioRxiv45 citations Open access
Semantic Scholar
Proteomics, Lipidomics, Metabolomics, and 16S DNA Sequencing of Dental Plaque From Patients With Diabetes and Periodontal Disease
K. Overmyer, T. Rhoads, Anna E. Merrill, Zhan Ye +4 more
2020bioRxiv44 citations Open access
Semantic Scholar
Top-Down Characterization of an Intact Monoclonal Antibody using Activated Ion-Electron Transfer Dissociation
J. Lodge, Kevin L. Schauer, Dain R. Brademan, N. Riley +3 more
2020Analytical Chemistry43 citations Open access
Semantic Scholar
N-glycoproteomics of brain synapses and synaptic vesicles
M. Bradberry, Trenton M. Peters-Clarke, Evgenia Shishkova, E. Chapman +1 more
2023Cell Reports39 citations Open access
Semantic Scholar
Mapping of the contraction-induced phosphoproteome identifies TRIM28 as a significant regulator of skeletal muscle size and function
Nathaniel D. Steinert, Gregory K. Potts, G. Wilson, Amelia M. Klamen +5 more
2021Cell Reports39 citations Open access
Semantic Scholar
UbiB proteins regulate cellular CoQ distribution in Saccharomyces cerevisiae
Zachary A. Kemmerer, Kyle P. Robinson, Jonathan M. Schmitz, Mateusz Manicki +5 more
2021Nature Communications39 citations Open access
Semantic Scholar
Constructing and deconstructing GATA2-regulated cell fate programs to establish developmental trajectories
Kirby D. Johnson, Daniel J Conn, Evgenia Shishkova, Koichi R. Katsumura +11 more
2020Journal of Experimental Medicine39 citations Open access
Semantic Scholar
Rapid multi-omics sample preparation for mass spectrometry
Laura K. Muehlbauer, Annie Jen, Yunyun Zhu, Yuchen He +3 more
2023Analytical Chemistry35 citations
Semantic Scholar
Carbomer-based adjuvant elicits CD8 T-cell immunity by inducing a distinct metabolic state in cross-presenting dendritic cells
Woojong Lee, Brock Kingstad-Bakke, B. Paulson, Autumn Larsen +17 more
2021PLoS Pathogens35 citations Open access
Semantic Scholar
Multi-omic Single-Shot Technology for Integrated Proteome and Lipidome Analysis
Yuchen He, Edrees H. Rashan, V. Linke, Evgenia Shishkova +6 more
2020Analytical Chemistry35 citations Open access
Semantic Scholar
Tailoring a Global Iron Regulon to a Uropathogen
R. Banerjee, Erin Weisenhorn, K. Schwartz, Kevin S. Myers +5 more
2020mBio34 citations Open access
Semantic Scholar
Structure and functionality of a multimeric human COQ7:COQ9 complex
Mateusz Manicki, H. Aydin, L. Abriata, K. Overmyer +5 more
2021bioRxiv33 citations Open access
Semantic Scholar
Ribonucleic acid sequence characterization by negative electron transfer dissociation mass spectrometry
Trenton M. Peters-Clarke, Qiuwen Quan, Dain R. Brademan, Alexander S. Hebert +2 more
2020Analytical Chemistry33 citations Open access
Semantic Scholar
Evaluation of the Orbitrap Ascend Tribrid Mass Spectrometer for Shotgun Proteomics
Yuchen He, Evgenia Shishkova, Trenton M. Peters-Clarke, Dain R. Brademan +8 more
2023Analytical Chemistry32 citations
Semantic Scholar
Global Phosphoproteome Analysis Using FAIMS on a Hybrid Orbitrap Mass Spectrometer
Laura K. Muehlbauer, Alexander S. Hebert, M. Westphall, Evgenia Shishkova +1 more
2020Analytical Chemistry32 citations
Semantic Scholar
Unique inflammatory profile is associated with higher SARS-CoV-2 acute respiratory distress syndrome (ARDS) mortality
J. Balnis, Alejandro P. Adam, A. Chopra, H. Chieng +10 more
2020medRxiv30 citations Open access
Semantic Scholar
Phosphorylation controls RNA binding and transcription by the influenza virus polymerase
A. Dawson, G. Wilson, Elyse C. Freiberger, A. Mondal +2 more
2020bioRxiv29 citations Open access
Semantic Scholar
DNA-Scaffolded Synergistic Catalysis
Edward B. Pimentel, Trenton M. Peters-Clarke, J. Coon, Jeffrey D. Martell
2021Journal of the American Chemical Society28 citations Open access
Semantic Scholar
Genome-Scale Transcription-Translation Mapping Reveals Features of Zymomonas mobilis Transcription Units and Promoters
Jessica M. Vera, I. N. Ghosh, Yao-Ping Zhang, Alexander S. Hebert +2 more
2020mSystems28 citations Open access
Semantic Scholar
Argonaut: A Web Platform for Collaborative Multi-omic Data Visualization and Exploration
Dain R. Brademan, I. J. Miller, Nicholas W. Kwiecien, D. Pagliarini +3 more
2020Patterns25 citations Open access
Semantic Scholar
Discovering How Heme Controls Genome Function Through Heme-omics
Ruiqi Liao, Ye Zheng, Xin Liu, Yuannyu Zhang +9 more
2020Cell Reports24 citations Open access
Semantic Scholar
Survival Following Traumatic Brain Injury in Drosophila Is Increased by Heterozygosity for a Mutation of the NF-κB Innate Immune Response Transcription Factor Relish
Laura C. Swanson, E. A. Trujillo, Gene H Thiede, Rebeccah J. Katzenberger +4 more
2020Genetics23 citations Open access
Semantic Scholar
A bacterial biosynthetic pathway for methylated furan fatty acids
Rachelle A. S. Lemke, Stephanie Olson, Kaitlin Morse, S. Karlen +6 more
2020Journal of Biological Chemistry20 citations Open access
Semantic Scholar
Post-Translation Regulation of Influenza Virus Replication.
A. Dawson, G. Wilson, J. Coon, Andrew Mehle
2020Annual Review of Virology20 citations
Semantic Scholar
Loss of C2orf69 defines a fatal autoinflammatory syndrome in humans and zebrafish that evokes a glycogen storage-associated mitochondriopathy.
H. Wong, S. H. Seet, Michael Maier, A. Gurel +68 more
2021American Journal of Human Genetics19 citations Open access
Semantic Scholar
Multi-omics analysis identifies essential regulators of mitochondrial stress response in two wild-type C. elegans strains
Arwen W. Gao, Gaby El Alam, Amélia Lalou, T. Y. Li +9 more
2021bioRxiv19 citations Open access
Semantic Scholar
Systematic Analysis of Metabolic Bottlenecks in the Methylerythritol 4-Phosphate (MEP) Pathway of Zymomonas mobilis
Daven B. Khana, M. Tatli, Julio Rivera Vazquez, S. M. Weraduwage +7 more
2023mSystems18 citations Open access
Semantic Scholar
Onto grid purification and 3D reconstruction of protein complexes using matrix-landing native mass spectrometry
Kenneth W. Lee, Austin Z. Salome, M. Westphall, T. Grant +1 more
2023Journal of Proteome Research18 citations
Semantic Scholar
The molecular and metabolic program by which white adipocytes adapt to cool physiologic temperatures
H. Mori, Colleen E. Dugan, Akira Nishii, Ameena Benchamana +15 more
2021PLoS Biology18 citations Open access
Semantic Scholar
Water-soluble saponins accumulate in drought-stressed switchgrass and may inhibit yeast growth during bioethanol production
Sarvada Chipkar, K. Smith, Elizabeth Whelan, Derek J. Debrauske +9 more
2022Biotechnology for Biofuels and Bioproducts17 citations Open access
Semantic Scholar
Rapid and Gentle Immunopurification of Brain Synaptic Vesicles
M. Bradberry, Shweta Mishra, Zhao Zhang, Lanxi Wu +4 more
2022Journal of Neuroscience17 citations Open access
Semantic Scholar
Defining intermediates and redundancies in coenzyme Q precursor biosynthesis
Kyle P. Robinson, Adam Jochem, Sheila E Johnson, T. Reddy +3 more
2021Journal of Biological Chemistry17 citations Open access
Semantic Scholar
Maximizing MS/MS Acquisition for Lipidomics Using Capillary Separation and Orbitrap Tribrid Mass Spectrometer
Yuchen He, Dain R. Brademan, Paul D. Hutchins, K. Overmyer +1 more
2022Analytical Chemistry15 citations Open access
Semantic Scholar
High throughput, comprehensive single cell proteomics analysis of Xenopus laevis embryos at 50-cell stage using a microplate-based MICRO-FASP system
Zhenbin Zhang, Kyle M. Dubiak, Evgenia Shishkova, P. W. Huber +2 more
2022Analytical Chemistry15 citations Open access
Semantic Scholar
Matrix-Landing Mass Spectrometry for Electron Microscopy Imaging of Native Protein Complexes
Austin Z. Salome, Kenneth W. Lee, T. Grant, M. Westphall +1 more
2022Analytical Chemistry15 citations
Semantic Scholar
Production of hydrolysates from unmilled AFEX-pretreated switchgrass and comparative fermentation with Zymomonas mobilis
Yao-Ping Zhang, José Serate, Dan Xie, Shabda Gajbhiye +8 more
202015 citations Open access
Semantic Scholar
Phosphorothioate RNA Analysis by NETD Tandem Mass Spectrometry
Trenton M. Peters-Clarke, Qiuwen Quan, Benton J. Anderson, William M. McGee +6 more
2024Molecular & Cellular Proteomics14 citations Open access
Semantic Scholar

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