Researcher profile · Semantic Scholar

Pavel Sinitcyn

h-index: 12
Works: 25
Citations: 8,503

Most-cited papers

The Perseus computational platform for comprehensive analysis of (prote)omics data
S. Tyanova, Tikira Temu, Pavel Sinitcyn, Arthur Carlson +4 more
2016Nature Methods7,666 citations Open access
Semantic Scholar
MaxDIA enables library-based and library-free data-independent acquisition proteomics
Pavel Sinitcyn, Hamid Hamzeiy, Favio Salinas Soto, Daniel N. Itzhak +14 more
2021Nature Biotechnology214 citations Open access
Semantic Scholar
The ER membrane protein complex interacts cotranslationally to enable biogenesis of multipass membrane proteins
M. J. Shurtleff, Daniel N. Itzhak, Jeffrey A. Hussmann, Nicole T. Schirle Oakdale +14 more
2018eLife192 citations Open access
Semantic Scholar
Global detection of human variants and isoforms by deep proteome sequencing
Pavel Sinitcyn, Alicia L. Richards, Robert J. Weatheritt, Dain R. Brademan +8 more
2023Nature Biotechnology169 citations Open access
Semantic Scholar
Fast and deep phosphoproteome analysis with the Orbitrap Astral mass spectrometer
Noah M. Lancaster, Pavel Sinitcyn, Patrick Forny, Trenton M. Peters-Clarke +20 more
2024Nature Communications50 citations Open access
Semantic Scholar
MaxQuant goes Linux
Pavel Sinitcyn, S. Tiwary, J. Rudolph, Petra Gutenbrunner +5 more
2018Nature Methods45 citations
Semantic Scholar
Technical Evaluation of Plasma Proteomics Technologies
William F Beimers, K. Overmyer, Pavel Sinitcyn, Noah M. Lancaster +2 more
2025Journal of Proteome Research42 citations Open access
Semantic Scholar
The One Hour Human Proteome
Lia R. Serrano, Trenton M. Peters-Clarke, T. Arrey, E. Damoc +16 more
2024Molecular & Cellular Proteomics42 citations Open access
Semantic Scholar
Fast and Deep Phosphoproteome Analysis with the Orbitrap Astral Mass Spectrometer
Noah M. Lancaster, Pavel Sinitcyn, Patrick Forny, Trenton M. Peters-Clarke +20 more
2023bioRxiv36 citations Open access
Semantic Scholar
Deep and fast label-free Dynamic Organellar Mapping
J. Schessner, Vincent Albrecht, A. Davies, Pavel Sinitcyn +1 more
2021bioRxiv25 citations Open access
Semantic Scholar
A Technical Evaluation of Plasma Proteomics Technologies
William F Beimers, K. Overmyer, Pavel Sinitcyn, Noah M. Lancaster +2 more
2025bioRxiv20 citations
Semantic Scholar
Multi-targeted therapy resistance via drug-induced secretome fucosylation
M. B. Aldonza, Junghwa Cha, Insung Yong, Jayoung Ku +16 more
2021bioRxiv13 citations Open access
Semantic Scholar
Dynamic Quadrupole Selection to Associate Precursor Masses with MS/MS Products in Data-Independent Acquisition
Keaton L. Mertz, Lia R. Serrano, Pavel Sinitcyn, J. Coon
2025Journal of the American Society for Mass Spectrometry3 citations Open access
Semantic Scholar
Systematic benchmarking of mass spectrometry-based antibody sequencing reveals methodological biases
M. Chernigovskaya, Khang Lê Quý, Maria Stensland, Sachin Singh +15 more
2024bioRxiv3 citations Open access
Semantic Scholar
Deep Learning Predicts Non-Normal Transmission Distributions in High-Field Asymmetric Waveform Ion Mobility (FAIMS) Directly from Peptide Sequence
J. McKetney, I. J. Miller, Alexandre Hutton, Pavel Sinitcyn +3 more
2025Analytical Chemistry2 citations Open access
Semantic Scholar
QuadraSHAP: Stable and Scalable Shapley Values for Product Games via Gauss-Legendre Quadrature
Majid Mohammadi, Grigory Reznikov, Pavel Sinitcyn, Krikamol Muandet +1 more
2026arXiv.org1 citations
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Deep Learning Predicts Non-Normal Peptide FAIMS Mobility Distributions Directly from Sequence
J. McKetney, I. J. Miller, Alexandre Hutton, Pavel Sinitcyn +2 more
2024bioRxiv1 citations Open access
Semantic Scholar
Disentangling maternal pregnancy and fetal-specific plasma signatures through integrated proteomics and site-specific N-glycoproteomics
Shelley Jager, S. K. Nteak, Grigory Reznikov, F. R. Ianiski +4 more
2026bioRxiv0 citations Open access
Semantic Scholar
Community-driven advances in computational mass spectrometry: The perspective of EuBIC-MS members.
Dirk Winkelhardt, J. Schessner, Sven Berres, Alireza Nameni +19 more
2026Journal of Proteomics0 citations Open access
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Rapid Peptide Mapping of Monoclonal Antibodies with Direct Infusion Mass Spectrometry
Austin Z. Salome, Marcel Morgenstern, Alexander S. Hebert, C. Wenger +17 more
2026bioRxiv0 citations Open access
Semantic Scholar
Protein Language Model Decoys for Target Decoy Competition in Proteomics: Quality Assessment and Benchmarks
Grigory Reznikov, Fabrice Kusters, Majid Mohammadi, H. V. D. van den Toorn +1 more
2026bioRxiv0 citations Open access
Semantic Scholar
QuadraSHAP: $\epsilon$-Exact Shapley Values for Product Games in Logarithmic Parallel Time
Majid Mohammadi, Grigory Reznikov, Pavel Sinitcyn, Krikamol Muandet +1 more
20260 citations
Semantic Scholar
Abstract 1356 Fast and Deep Phosphoproteome Analysis with the Orbitrap Astral
Noah M. Lancaster, Pavel Sinitcyn, Patrick Forny, David Pagliarini +2 more
2025Journal of Biological Chemistry0 citations Open access
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From reference to reality: identifying noncanonical peptides.
Ellen Frances Shute, Pavel Sinitcyn
2025Trends in Genetics0 citations
Semantic Scholar
Fast and Deep Phosphoproteome Analysis with the Orbitrap Astral Mass 1 Spectrometer 2
Noah M. Lancaster, Pavel Sinitcyn, Patrick Forny, Trenton M. Peters-Clarke +18 more
0 citations
Semantic Scholar

V. Zabrouskov

×5

J. Cox×4

M. Westphall×4

Patrick Forny×4

Trenton M. Peters-Clarke×4

T. Arrey×4

A. Pashkova×4

M. L. Robinson×4