C. Keefe

Most-cited papers

1. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

   E. Bolyen, J. Rideout, M. Dillon, N. Bokulich +108 more

   2019Nature Biotechnology20K citations Open access

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2. QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

   E. Bolyen, J. Rideout, M. Dillon, N. Bokulich +106 more

   20181,200 citations Open access

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3. Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

   E. Bolyen, J. Rideout, M. Dillon, N. Bokulich +108 more

   2019Nature Biotechnology724 citations Open access

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4. Diversity of fall armyworm, Spodoptera frugiperda and their gut bacterial community in Kenya

   J. Gichuhi, Sevgan Subramanian, F. Khamis, J. van den Berg +366 more

   2019bioRxiv65 citations Open access

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5. Predicting Neurodegenerative Disease Using Prepathology Gut Microbiota Composition: a Longitudinal Study in Mice Modeling Alzheimer’s Disease Pathologies

   Emily Borsom, Kathryn A. Conn, C. Keefe, Chloe Herman +9 more

   2023Microbiology spectrum41 citations Open access

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6. Facilitating bioinformatics reproducibility with QIIME 2 Provenance Replay

   C. Keefe, M. Dillon, Elizabeth Gehret, Chloe Herman +4 more

   2023PLoS Comput. Biol.16 citations Open access

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7. Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops

   M. Dillon, E. Bolyen, Anja Adamov, A. Belk +27 more

   2021PLoS Comput. Biol.5 citations Open access

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8. A longitudinal study of the unique gut microbiota of 3xTg‐AD mice modeling key AD pathologies

   Emily M. Borsom, C. Keefe, Allyson H. Hirsch, Gabrielle M. Orsini +9 more

   2021Alzheimer's & Dementia2 citations

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9. Predicting neurodegenerative disease using the unique gut microbiota composition of transgenic mice modeling amyloid‐β plaques and neurofibrillary tangles

   Emily M. Borsom, Kathryn A. Conn, C. Keefe, Allyson H. Hirsch +9 more

   2022Alzheimer's & Dementia1 citations

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10. Influence of fecal microbiota transplantation on gut microbiota composition in transgenic mice modeling amyloid‐β plaques and neurofibrillary tangles

    Emily M. Borsom, C. Keefe, Allyson H. Hirsch, Kathryn A. Conn +7 more

    2022Alzheimer's & Dementia0 citations

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11. Peer Review #1 of "Altered gut microbiota associated with symptom severity in schizophrenia (v0.1)"

    Shi-Jia Li, M. Zhuo, Xia Huang, Yuan-Yuan Huang +496 more

    20200 citations Open access

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