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D. Petráš · SciRah

Researcher profile · Semantic Scholar

D. Petráš

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D. Petráš — researcher profile on SciRah

h-index: 46
Works: 155
Citations: 32K

Most-cited papers

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E. Bolyen, J. Rideout, M. Dillon, N. Bokulich +108 more
2019Nature Biotechnology20K citations Open access
Semantic Scholar
Feature-Based Molecular Networking in the GNPS Analysis Environment
L. Nothias, D. Petráš, Robin Schmid, Kai Dührkop +58 more
2019Nature Methods1,458 citations Open access
Semantic Scholar
Integrative analysis of multimodal mass spectrometry data in MZmine 3
Robin Schmid, S. Heuckeroth, A. Korf, Aleksandr Smirnov +38 more
2023Nature Biotechnology1,077 citations Open access
Semantic Scholar
Systematic classification of unknown metabolites using high-resolution fragmentation mass spectra
Kai Dührkop, L. Nothias, Markus Fleischauer, R. Reher +7 more
2020Nature Biotechnology753 citations Open access
Semantic Scholar
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E. Bolyen, J. Rideout, M. Dillon, N. Bokulich +108 more
2019Nature Biotechnology724 citations Open access
Semantic Scholar
Reproducible molecular networking of untargeted mass spectrometry data using GNPS
Allegra T. Aron, Emily C. Gentry, K. McPhail, L. Nothias +38 more
2019Nature Protocols629 citations Open access
Semantic Scholar
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment
Robin Schmid, D. Petráš, L. Nothias, Mingxun Wang +41 more
2021Nature Communications283 citations Open access
Semantic Scholar
Mass Spectrometry Searches using MASST.
Mingxun Wang, A. Jarmusch, F. Vargas, A. Aksenov +32 more
2020Nature Biotechnology242 citations Open access
Semantic Scholar
Database-independent molecular formula annotation using Gibbs sampling through ZODIAC
M. Ludwig, L. Nothias, Kai Dührkop, I. Koester +8 more
2020Nature Machine Intelligence193 citations Open access
Semantic Scholar
Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity
J. Shaffer, L. Nothias, L. Thompson, Jon G. Sanders +47 more
2022Nature Microbiology172 citations Open access
Semantic Scholar
Reproducible mass spectrometry data processing and compound annotation in MZmine 3
S. Heuckeroth, T. Damiani, Aleksandr Smirnov, Olena Mokshyna +15 more
2024Nature Protocols156 citations
Semantic Scholar
The extracellular matrix protects Bacillus subtilis colonies from Pseudomonas invasion and modulates plant co-colonization
C. Molina-Santiago, J. Pearson, Yurena Navarro, M. V. Berlanga-Clavero +10 more
2019Nature Communications154 citations Open access
Semantic Scholar
Convergent Evolution of Pain-Inducing Defensive Venom Components in Spitting Cobras
T. D. Kazandjian, D. Petráš, S. Robinson, J. van Thiel +25 more
2020Science150 citations Open access
Semantic Scholar
Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data
A. Aksenov, I. Laponogov, Zheng Zhang, S. Doran +66 more
2020Nature Biotechnology145 citations Open access
Semantic Scholar
A community resource for paired genomic and metabolomic data mining
M. Schorn, S. Verhoeven, L. Ridder, Florian Huber +106 more
2021Nature Chemical Biology115 citations Open access
Semantic Scholar
ReDU: A Framework to Find and Re-analyze Public Mass Spectrometry Data
A. Jarmusch, Mingxun Wang, Christine M. Aceves, Rohit S. Advani +40 more
2020Nature Methods113 citations Open access
Semantic Scholar
microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data
Simone Zuffa, Robin Schmid, A. Bauermeister, P. W. P. Gomes +105 more
2024Nature Microbiology105 citations Open access
Semantic Scholar
Bacillus subtilis biofilm matrix components target seed oil bodies to promote growth and anti-fungal resistance in melon
M. V. Berlanga-Clavero, C. Molina-Santiago, A. M. Caraballo-Rodríguez, D. Petráš +6 more
2022Nature Microbiology86 citations Open access
Semantic Scholar
Siderophore-mediated zinc acquisition enhances enterobacterial colonization of the inflamed gut
Judith Behnsen, Hui Zhi, Allegra T. Aron, V. Subramanian +22 more
2021Nature Communications84 citations Open access
Semantic Scholar
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics
Wout Bittremieux, Nicole E. Avalon, Sydney P. Thomas, Sarvar A. Kakhkhorov +28 more
2023bioRxiv83 citations Open access
Semantic Scholar
GNPS Dashboard: Collaborative Exploration of Mass Spectrometry Data in the Web Browser
D. Petráš, Vanessa V. Phelan, Deepa D. Acharya, Andrew E. Allen +31 more
2021Nature Methods81 citations Open access
Semantic Scholar
Distinguishing the molecular diversity, nutrient content, and energetic potential of exometabolomes produced by macroalgae and reef-building corals
L. Wegley Kelly, Craig E. Nelson, D. Petráš, I. Koester +11 more
2022Proceedings of the National Academy of Sciences of the United States of America75 citations Open access
Semantic Scholar
Native Mass Spectrometry based Metabolomics Identifies Metal-binding Compounds
Allegra T. Aron, D. Petráš, Robin Schmid, J. Gauglitz +11 more
2021Nature Chemistry70 citations Open access
Semantic Scholar
Metabolomics and Molecular Networking to Characterize the Chemical Space of Four Momordica Plant Species
Anza-Tshilidzi Ramabulana, D. Petráš, N. Madala, F. Tugizimana
2021Metabolites64 citations Open access
Semantic Scholar
Untargeted mass spectrometry-based metabolomics approach unveils molecular changes in raw and processed foods and beverages.
J. Gauglitz, Christine M. Aceves, A. Aksenov, Gajender Aleti +43 more
2020Food Chemistry64 citations Open access
Semantic Scholar
Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol
Matthew A. Pendergraft, P. Belda-Ferre, D. Petráš, Clare Morris +10 more
2023Environmental Science and Technology54 citations Open access
Semantic Scholar
Evaluation of Data-Dependent MS/MS Acquisition Parameters for Non-Targeted Metabolomics and Molecular Networking of Environmental Samples: Focus on the Q Exactive Platform
P. Stincone, A. K. Pakkir Shah, Robin Schmid, L. Graves +8 more
2023Analytical Chemistry53 citations Open access
Semantic Scholar
Non-targeted tandem mass spectrometry enables the visualization of organic matter chemotype shifts in coastal seawater
D. Petráš, J. Minich, Lucia Cancelada, Ralph R. Torres +7 more
2020Chemosphere52 citations Open access
Semantic Scholar
Solenodon genome reveals convergent evolution of venom in eulipotyphlan mammals
N. Casewell, D. Petráš, D. Card, Vivek Suranse +29 more
2019Proceedings of the National Academy of Sciences of the United States of America51 citations Open access
Semantic Scholar
Native metabolomics identifies the rivulariapeptolide family of protease inhibitors
R. Reher, Allegra T. Aron, Pavla Fajtová, P. Stincone +24 more
2021Nature Communications50 citations Open access
Semantic Scholar
A Universal Language for Finding Mass Spectrometry Data Patterns
Alan K. Jarmusch, Allegra T. Aron, D. Petráš, Vanessa V. Phelan +65 more
2022bioRxiv44 citations Open access
Semantic Scholar
Chemical interplay and complementary adaptative strategies toggle bacterial antagonism and co-existence
C. Molina-Santiago, D. Vela-Corcía, D. Petráš, L. Díaz-Martínez +7 more
2021bioRxiv41 citations Open access
Semantic Scholar
Connecting Metabolome and Phenotype: Recent Advances in Functional Metabolomics Tools for the Identification of Bioactive Natural Products
G. Vitale, Christian Geibel, Vidit Minda, Ming-Xun Wang +2 more
2024Natural product reports (Print)39 citations Open access
Semantic Scholar
Fungal–bacterial interaction selects for quorum sensing mutants with increased production of natural antifungal compounds
A. A. Albarracín Orio, D. Petráš, Romina A. Tobares, A. Aksenov +6 more
2020Communications Biology36 citations Open access
Semantic Scholar
Multiomics Analysis Provides Insight into the Laboratory Evolution of Escherichia coli toward the Metabolic Usage of Fluorinated Indoles
Federica Agostini, L. Sinn, D. Petráš, Christian J. Schipp +6 more
2020ACS Central Science36 citations Open access
Semantic Scholar
A Universal Language for Finding Mass Spectrometry Data Patterns
T. Damiani, A. Jarmusch, Allegra T. Aron, D. Petráš +70 more
2025Nature Methods35 citations Open access
Semantic Scholar
Resurrecting ancestral antibiotics: unveiling the origins of modern lipid II targeting glycopeptides
Mathias H. Hansen, Martina Adamek, Dumitrita Iftime, D. Petráš +5 more
2023Nature Communications33 citations Open access
Semantic Scholar
Chemical Proportionality within Molecular Networks.
D. Petráš, A. M. Caraballo-Rodríguez, A. Jarmusch, C. Molina-Santiago +7 more
2021Analytical Chemistry32 citations Open access
Semantic Scholar
Organic Matter Composition at Ocean Station Papa Affects Its Bioavailability, Bacterioplankton Growth Efficiency and the Responding Taxa
B. Stephens, Keri Opalk, D. Petráš, Shu-Ting Liu +4 more
2020Frontiers in Marine Science31 citations Open access
Semantic Scholar
The emerging field of venom-microbiomics for exploring venom as a microenvironment, and the corresponding Initiative for Venom Associated Microbes and Parasites (iVAMP)
S. Ul-Hasan, Eduardo Rodríguez-Román, A. Reitzel, R. M. M. Adams +10 more
2019Toxicon: X31 citations Open access
Semantic Scholar
Mass Difference Matching Unfolds Hidden Molecular Structures of Dissolved Organic Matter
C. Simon, Kai Dührkop, D. Petráš, Vanessa-Nina Roth +3 more
2022Environmental Science and Technology30 citations Open access
Semantic Scholar
A Metabolic Choreography of Maize Plants Treated with a Humic Substance-Based Biostimulant under Normal and Starved Conditions
K. Othibeng, L. Nephali, Anza-Tshilidzi Ramabulana, P. Steenkamp +5 more
2021Metabolites29 citations Open access
Semantic Scholar
Leptochelins A–C, Cytotoxic Metallophores Produced by Geographically Dispersed Leptothoe Strains of Marine Cyanobacteria
Nicole E. Avalon, Mariana Reis, C. Thornburg, R. T. Williamson +26 more
2024Journal of the American Chemical Society27 citations Open access
Semantic Scholar
Venomics and Peptidomics of Palearctic Vipers: A Clade-Wide Analysis of Seven Taxa of the Genera Vipera, Montivipera, Macrovipera, and Daboia across Türkiye
Maik Damm, M. Karış, D. Petráš, A. Nalbantsoy +2 more
2024bioRxiv25 citations Open access
Semantic Scholar
Progress and challenges in exploring aquatic microbial communities using non-targeted metabolomics
Monica Thukral, Andrew E. Allen, D. Petráš
2023The ISME Journal25 citations Open access
Semantic Scholar
Illuminating the dark metabolome of Pseudo-nitzschia-microbiome associations
I. Koester, Zachary A. Quinlan, L. Nothias, M. White +10 more
2022Environmental Microbiology25 citations Open access
Semantic Scholar
Molecular Commerce on Coral Reefs: Using Metabolomics to Reveal Biochemical Exchanges Underlying Holobiont Biology and the Ecology of Coastal Ecosystems
L. W. Kelly, Craig E. Nelson, L. Aluwihare, M. Arts +6 more
2021Frontiers in Marine Science25 citations Open access
Semantic Scholar
The Diversity, Metabolomics Profiling, and the Pharmacological Potential of Actinomycetes Isolated from the Estremadura Spur Pockmarks (Portugal)
António Pinto-Almeida, A. Bauermeister, L. Luppino, Inês R. Grilo +8 more
2021Marine Drugs25 citations Open access
Semantic Scholar
ZODIAC: database-independent molecular formula annotation using Gibbs sampling reveals unknown small molecules
M. Ludwig, L. Nothias, Kai Dührkop, I. Koester +8 more
2019bioRxiv25 citations Open access
Semantic Scholar
Microbiomes and metabolomes of dominant coral reef primary producers illustrate a potential role for immunolipids in marine symbioses
Helena Mannochio-Russo, Sean O. I. Swift, Kirsten K. Nakayama, C. B. Wall +22 more
2023Communications Biology22 citations Open access
Semantic Scholar

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