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Lyam Baudry · SciRah

Researcher profile · Semantic Scholar

Lyam Baudry

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Lyam Baudry — researcher profile on SciRah

h-index: 12
Works: 22
Citations: 624

Most-cited papers

Computer vision for pattern detection in chromosome contact maps
Cyril Matthey-Doret, Lyam Baudry, A. Breuer, Rémi Montagne +12 more
2020Nature Communications137 citations Open access
Semantic Scholar
Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay
M. Marbouty, Lyam Baudry, A. Cournac, R. Koszul
2017Science Advances119 citations Open access
Semantic Scholar
Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga
P. Simion, Jitendra Narayan, A. Houtain, Alessandro Derzelle +23 more
2021Science Advances60 citations Open access
Semantic Scholar
Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization
J. Gauthier, Hélène Boulain, Joke J. F. A. van Vugt, Lyam Baudry +47 more
2021Communications Biology58 citations Open access
Semantic Scholar
instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder
Lyam Baudry, Nadège Guiglielmoni, H. Marie-Nelly, Alexandre Cormier +9 more
2020Genome Biology50 citations Open access
Semantic Scholar
Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes
Etienne Jourdier, Lyam Baudry, Dante Poggi-Parodi, Yoan Vicq +4 more
2017Biotechnology for Biofuels36 citations Open access
Semantic Scholar
Orchestrating chromosome conformation capture analysis with Bioconductor
Jacques Serizay, Cyril Matthey-Doret, Amaury Bignaud, Lyam Baudry +1 more
2024Nature Communications29 citations Open access
Semantic Scholar
MetaTOR: A Computational Pipeline to Recover High-Quality Metagenomic Bins From Mammalian Gut Proximity-Ligation (meta3C) Libraries
Lyam Baudry, Théo Foutel--Rodier, A. Thierry, R. Koszul +1 more
2019Frontiers in Genetics28 citations Open access
Semantic Scholar
Chromosomal assembly of the flat oyster (Ostrea edulis L.) genome as a new genetic resource for aquaculture
I. Boutet, H. J. Alves Monteiro, Lyam Baudry, T. Takeuchi +19 more
2022Evolutionary Applications26 citations Open access
Semantic Scholar
Serpentine: a flexible 2D binning method for differential Hi-C analysis
Lyam Baudry, G. Millot, A. Thierry, R. Koszul +1 more
2020Bioinform.22 citations Open access
Semantic Scholar
Homologous chromosomes in asexual rotifer Adineta vaga suggest automixis
P. Simion, Jitendra Narayan, A. Houtain, Alessandro Derzelle +17 more
2020bioRxiv13 citations Open access
Semantic Scholar
Normalization of Chromosome Contact Maps: Matrix Balancing and Visualization.
Cyril Matthey-Doret, Lyam Baudry, Shogofa Mortaza, Pierrick Moreau +2 more
2021Methods in molecular biology12 citations
Semantic Scholar
Chromosome-level genome assembly and annotation of two lineages of the ant Cataglyphis hispanica: stepping stones towards genomic studies of hybridogenesis and thermal adaptation in desert ants
H. Darras, Natalia de Souza Araujo, Lyam Baudry, Nadège Guiglielmoni +7 more
2022bioRxiv10 citations Open access
Semantic Scholar
Ancient co-option of LTR retrotransposons as yeast centromeres
Max A. B. Haase, Luciana Lazar‐Stefanita, Lyam Baudry, A. Wudzinska +6 more
2025bioRxiv8 citations Open access
Semantic Scholar
Segmented filamentous bacteria are worldwide human gut commensals
Shashi Kiran, A. R. Cruz, A. Daniau, B. Ma +21 more
2026Nature Communications5 citations Open access
Semantic Scholar
Author Correction: Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization
J. Gauthier, Hélène Boulain, Joke J. F. A. van Vugt, Lyam Baudry +47 more
2021Communications Biology4 citations Open access
Semantic Scholar
Chromosomal resolution reveals symbiotic virus colonization of parasitic wasp genomes
J. Gauthier, Hélène Boulain, J. V. van Vugt, Lyam Baudry +47 more
2020bioRxiv3 citations Open access
Semantic Scholar
Chromosome-level quality scaffolding of brown algal genomes using InstaGRAAL, a proximity ligation-based scaffolder
Lyam Baudry, M. Marbouty, H. Marie-Nelly, Alexandre Cormier +9 more
2019bioRxiv2 citations Open access
Semantic Scholar
Correction to: Proximity ligation scaffolding and comparison of two Trichoderma reesei strains genomes
Etienne Jourdier, Lyam Baudry, Dante Poggi-Parodi, Yoan Vicq +4 more
2018Biotechnology for Biofuels2 citations Open access
Semantic Scholar
Meta3C analysis of a mouse gut microbiome
M. Marbouty, Lyam Baudry, A. Cournac, R. Koszul
2015bioRxiv2 citations Open access
Semantic Scholar
Chromosomal assembly of the flat oyster (Ostrea edulis L.) genome as a new genetic ressource for aquaculture
I. Boutet, H. J. Alves Monteiro, Lyam Baudry, T. Takeuchi +18 more
2022bioRxiv1 citations Open access
Semantic Scholar
Investigating chromosome dynamics through Hi-C assembly
Lyam Baudry
0 citations
Semantic Scholar

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R. Koszul×19
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R. Koszul — researcher profile on SciRah
M. Marbouty×16
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M. Marbouty — researcher profile on SciRah
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