Donald Freed

Most-cited papers

1. A draft map of the human proteome

   Min-Sik Kim, Sneha M. Pinto, D. Getnet, R. Nirujogi +68 more

   2014Nature2,166 citations Open access

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2. The Sentieon Genomics Tools – A fast and accurate solution to variant calling from next-generation sequence data

   Donald Freed, Rafael Aldana, Jessica A. Weber, J. Edwards

   2017bioRxiv282 citations Open access

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3. Intersection of diverse neuronal genomes and neuropsychiatric disease: The Brain Somatic Mosaicism Network

   M. J. McConnell, J. V. Moran, A. Abyzov, S. Akbarian +35 more

   2017Science231 citations Open access

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4. Somatic Mosaicism in the Human Genome

   Donald Freed, Eric L Stevens, J. Pevsner

   2014Genes156 citations Open access

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5. The Contribution of Mosaic Variants to Autism Spectrum Disorder

   Donald Freed, J. Pevsner

   2016PLoS Genetics120 citations Open access

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6. TNscope: Accurate Detection of Somatic Mutations with Haplotype-based Variant Candidate Detection and Machine Learning Filtering

   Donald Freed, Renke Pan, Rafael Aldana

   2018bioRxiv64 citations Open access

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7. Data Processing and Germline Variant Calling with the Sentieon Pipeline.

   Rafael Aldana, Donald Freed

   2022Methods in molecular biology22 citations

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8. Haplotype counting by next-generation sequencing for ultrasensitive human DNA detection.

   Marija Debeljak, Donald Freed, J. Welch, Lisa M Haley +9 more

   2014Journal of Molecular Diagnostics22 citations Open access

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9. DNAscope: High accuracy small variant calling using machine learning

   Donald Freed, Renke Pan, Hao-Dong Chen, Zhipan Li +2 more

   2022bioRxiv16 citations Open access

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10. Small variant benchmark from a complete assembly of X and Y chromosomes

    Justin Wagner, N. Olson, Jennifer McDaniel, Lindsay Harris +23 more

    2023bioRxiv9 citations Open access

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11. Processing UMI Datasets at High Accuracy and Efficiency with the Sentieon ctDNA Analysis Pipeline

    Jin-Nan Hu, Cai Jiang, Yu S. Huang, Hao-Dong Chen +6 more

    2024bioRxiv3 citations Open access

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12. Sentieon DNAscope LongRead – A highly Accurate, Fast, and Efficient Pipeline for Germline Variant Calling from PacBio HiFi reads

    Donald Freed, W. Rowell, A. Wenger, Zhipan Li

    2022bioRxiv3 citations Open access

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13. The Genome In A Bottle HG002 assembly-based variant benchmark set enables comprehensive benchmarking of small and structural variants

    Nathan D. Olson, Nathan Dwarshuis, Nancy F. Hansen, S. Koren +61 more

    2026bioRxiv1 citations

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14. THE CONTRIBUTION OF MOSAIC MUTATION TO AUTISM SPECTRUM DISORDER

    Donald Freed

    20170 citations

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15. Abstract 4270: NGS based microhaplotype counting for ultrasensitive human DNA detection

    Marija Debeljak, Donald Freed, J. Welch, Lisa M Haley +10 more

    20150 citations

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