Jin-Nan Hu

Most-cited papers

1. Identification and characterization of in planta-expressed secreted effector proteins from Magnaporthe oryzae that induce cell death in rice.

   Song-Biao Chen, P. Songkumarn, R. Venu, M. Gowda +7 more

   2013Molecular Plant-Microbe Interactions133 citations Open access

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2. Genomic characterization of the conditionally dispensable chromosome in Alternaria arborescens provides evidence for horizontal gene transfer

   Jin-Nan Hu, Chenxi Chen, T. Peever, Ha X. Dang +2 more

   2012BMC Genomics90 citations Open access

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3. Combining ChIP-chip and Expression Profiling to Model the MoCRZ1 Mediated Circuit for Ca2+/Calcineurin Signaling in the Rice Blast Fungus

   Soonok Kim, Jin-Nan Hu, Yeonyee Oh, Jongsun Park +4 more

   2010PLoS Pathogens67 citations Open access

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4. Histoplasma yeast and mycelial transcriptomes reveal pathogenic-phase and lineage-specific gene expression profiles

   Jessica A. Edwards, Chenxi Chen, Megan M. Kemski, Jin-Nan Hu +2 more

   2013BMC Genomics57 citations Open access

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5. Genome comparison of two Magnaporthe oryzae field isolates reveals genome variations and potential virulence effectors

   Chenxi Chen, B. Lian, Jin-Nan Hu, H. Zhai +9 more

   2013BMC Genomics49 citations Open access

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6. RNA-Seq Analysis of the Sclerotinia homoeocarpa – Creeping Bentgrass Pathosystem

   A. M. Orshinsky, Jin-Nan Hu, S. Opiyo, Venu Reddyvari-Channarayappa +2 more

   2012PLoS ONE41 citations Open access

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7. Crop Node Detection and Internode Length Estimation Using an Improved YOLOv5 Model

   Jin-Nan Hu, Guo Li, Haolan Mo, Yibo Lv +3 more

   2023Agriculture17 citations Open access

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8. Sequence Variation and Recognition Specificity of the Avirulence Gene AvrPiz-T in Magnaporthe Oryzae Field Populations

   Chenxi Chen, Mei-Lian Chen, Jin-Nan Hu, Wen-Jing Zhang +11 more

   201417 citations Open access

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9. DNAscope: High accuracy small variant calling using machine learning

   Donald Freed, Renke Pan, Hao-Dong Chen, Zhipan Li +2 more

   2022bioRxiv16 citations Open access

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10. CRISPR-Detector: Fast and Accurate Detection, Visualization, and Annotation of Genome-Wide Mutations Induced by Gene Editing Events

    Lei Huang, Dan Wang, Hao-Dong Chen, Jin-Nan Hu +9 more

    2022bioRxiv8 citations Open access

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11. Facilitating the Fungus: Insights from the Genome of the Rice Blast Fungus, Magnaporthe Oryzae

    N. Donofrio, Jin-Nan Hu, T. Mitchell, R. A. Wilson

    20145 citations

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12. Correction: RNA-Seq Analysis of the Sclerotinia homoeocarpa – Creeping Bentgrass Pathosystem

    A. M. Orshinsky, Jin-Nan Hu, S. Opiyo, Venu Reddyvari-Channarayappa +2 more

    2012PLoS ONE4 citations Open access

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13. A novel and accelerated method for integrated alignment and variant calling from short and long reads

    Jin-Nan Hu, Don Freed, Hanying Feng, Hong Chen +2 more

    2026Frontiers Bioinform.3 citations Open access

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14. Processing UMI Datasets at High Accuracy and Efficiency with the Sentieon ctDNA Analysis Pipeline

    Jin-Nan Hu, Cai Jiang, Yu S. Huang, Hao-Dong Chen +6 more

    2024bioRxiv3 citations Open access

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15. Histoplasma yeast and mycelial transcriptomes reveal pathogenic-phase and lineage-specific gene expression profiles

    Jessica A. Edwards, Chenxi Chen, Megan M. Kemski, Jin-Nan Hu +2 more

    2013BMC Genomics3 citations Open access

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16. Accelerated, Accurate, Hybrid Short and Long Reads Alignment and Variant Calling

    Jin-Nan Hu, Don Freed, Hanying Feng, Hong Chen +2 more

    2025bioRxiv2 citations Open access

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17. Optimizing Accuracy and Efficiency in Analyzing Non-UMI Liquid Biopsy Datasets Using the Sentieon ctDNA Pipeline

    Li Niu, Jin-Nan Hu, Chuan Chen, Cai Jiang +4 more

    2024bioRxiv2 citations Open access

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18. Genome comparison of two Magnaporthe oryzae field isolates reveals genome variations and potential virulence effectors

    Chenxi Chen, Bi Lian, Jin-Nan Hu, H. Zhai +9 more

    2013BMC Genomics1 citations Open access

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19. Exploring Genome Structure and Gene Regulation Related to Virulence in Fungal Phytopathogens Using Next Generation Sequencing Techniques

    Jin-Nan Hu

    20131 citations

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20. A distribution pattern assisted method of transcription factor binding site discovery for both yeast and filamentous fungi

    Jin-Nan Hu, Chenxi Chen, Kun Huang, T. Mitchell

    20131 citations Open access

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21. Accelerated and High-Accuracy Variant Calling on Oxford Nanopore Technologies Sequencing Data with the Sentieon DNAscope LongRead and Hybrid Pipelines

    Jin-Nan Hu, Don Freed, Hanying Feng, Hong Chen +2 more

    2025bioRxiv0 citations Open access

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22. Corrigendum to "CRISPR-detector: fast and accurate detection, visualization, and annotation of genome-wide mutations induced by genome editing events" [Journal of Genetics and Genomics (2023) 563-572].

    Lei Huang, Dan Wang, Hao-Dong Chen, Jin-Nan Hu +9 more

    2023Journal of genetics and genomics = Yi chuan xue bao0 citations Open access

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23. Genomic Characterization of the Conditionally Dispensable Chromosome in Alternaria arborescens Provides Evidence for Horizontal Gene Transfer

    Jin-Nan Hu

    20130 citations

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