Skip to content

Home Search Authors Pakistan News Saved

SciRah

SciRah does not host or store research papers. Results come live from free, official scholarly APIs, and every paper links back to its original source.

Data sources

OpenAlex
Semantic Scholar
Crossref
CORE
arXiv
PubMed

Privacy policy Terms of service

D. Makarov · SciRah

Researcher profile · Semantic Scholar

D. Makarov

Share profile

D. Makarov — researcher profile on SciRah

h-index: 43
Works: 183
Citations: 6,901

Most-cited papers

Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy
Andrea Soranno, Brigitte Buchli, D. Nettels, Ryan R. Cheng +6 more
2012Proceedings of the National Academy of Sciences of the United States of America331 citations Open access
Semantic Scholar
Molecular catch bonds and the anti-Hammond effect in polymer mechanochemistry.
S. Konda, Johnathan N. Brantley, B. Varghese, K. Wiggins +2 more
2013Journal of the American Chemical Society134 citations
Semantic Scholar
Chemical reactions modulated by mechanical stress: extended Bell theory.
S. Konda, Johnathan N. Brantley, C. Bielawski, D. Makarov
2011Journal of Chemical Physics123 citations
Semantic Scholar
Integrated view of internal friction in unfolded proteins from single-molecule FRET, contact quenching, theory, and simulations
Andrea Soranno, A. Holla, F. Dingfelder, D. Nettels +2 more
2017Proceedings of the National Academy of Sciences of the United States of America99 citations Open access
Semantic Scholar
Concerted dihedral rotations give rise to internal friction in unfolded proteins.
Ignacia Echeverria, D. Makarov, G. Papoian
2014Journal of the American Chemical Society96 citations
Semantic Scholar
A harmonic transition state approximation for the duration of reactive events in complex molecular rearrangements.
S. Chaudhury, D. Makarov
2010Journal of Chemical Physics94 citations
Semantic Scholar
Perspective: Mechanochemistry of biological and synthetic molecules.
D. Makarov
2016Journal of Chemical Physics93 citations Open access
Semantic Scholar
Transition path times of coupled folding and binding reveal the formation of an encounter complex
Flurin Sturzenegger, F. Zosel, Erik D. Holmstrom, Karin J. Buholzer +3 more
2018Nature Communications92 citations Open access
Semantic Scholar
Generalized Langevin Equation as a Model for Barrier Crossing Dynamics in Biomolecular Folding.
Rohit Satija, D. Makarov
2019Journal of Physical Chemistry B66 citations
Semantic Scholar
Exploring the role of internal friction in the dynamics of unfolded proteins using simple polymer models.
Ryan R. Cheng, Alexander T. Hawk, D. Makarov
2013Journal of Chemical Physics66 citations
Semantic Scholar
A mechanistic study of electron transfer from the distal termini of electrode-bound, single-stranded DNAs
Takanori Uzawa, Ryan R. Cheng, R. White, D. Makarov +1 more
2010Journal of the American Chemical Society61 citations Open access
Semantic Scholar
Transition path times reveal memory effects and anomalous diffusion in the dynamics of protein folding.
Rohit Satija, A. Das, D. Makarov
2017Journal of Chemical Physics58 citations
Semantic Scholar
Regiochemical effects on molecular stability: a mechanochemical evaluation of 1,4- and 1,5-disubstituted triazoles.
Johnathan N. Brantley, S. Konda, D. Makarov, C. Bielawski
2012Journal of the American Chemical Society55 citations
Semantic Scholar
Single Molecule Science: Physical Principles and Models
D. Makarov
201553 citations
Semantic Scholar
Entropic and Electrostatic Effects on the Folding Free Energy of a Surface-Attached Biomolecule: An Experimental and Theoretical Study
Herschel M. Watkins, A. Vallée‐Bélisle, F. Ricci, D. Makarov +1 more
2012Journal of the American Chemical Society53 citations Open access
Semantic Scholar
Interplay of non-Markov and internal friction effects in the barrier crossing kinetics of biopolymers: insights from an analytically solvable model.
D. Makarov
2013Journal of Chemical Physics49 citations
Semantic Scholar
Broad distributions of transition-path times are fingerprints of multidimensionality of the underlying free energy landscapes
Rohit Satija, A. Berezhkovskii, D. Makarov
2020Proceedings of the National Academy of Sciences of the United States of America46 citations Open access
Semantic Scholar
Reaction Coordinates and Pathways of Mechanochemical Transformations.
S. Avdoshenko, D. Makarov
2016Journal of Physical Chemistry B44 citations
Semantic Scholar
Single-Molecule Test for Markovianity of the Dynamics along a Reaction Coordinate
A. Berezhkovskii, D. Makarov
2018Journal of Physical Chemistry Letters39 citations Open access
Semantic Scholar
Exploring the topography of the stress-modified energy landscapes of mechanosensitive molecules.
S. Konda, S. Avdoshenko, D. Makarov
2014Journal of Chemical Physics38 citations
Semantic Scholar
Transition Path Times in Non-Markovian Activated Rate Processes.
E. Medina, Rohit Satija, D. Makarov
2018Journal of Physical Chemistry B36 citations
Semantic Scholar
Molecular weight effect on the formation of β phase poly(9,9'-dioctylfluorene) in dilute solutions.
C. Cone, Ryan R. Cheng, D. Makarov, D. V. Vanden Bout
2011Journal of Physical Chemistry B36 citations
Semantic Scholar
Chain Dynamics Limit Electron Transfer from Electrode-Bound, Single-Stranded Oligonucleotides
Philippe Dauphin-Ducharme, Netzahualcóyotl Arroyo-Currás, R. Adhikari, Jacob Somerson +3 more
2018Journal of Physical Chemistry C34 citations
Semantic Scholar
Shapes of dominant transition paths from single-molecule force spectroscopy.
D. Makarov
2015Journal of Chemical Physics34 citations
Semantic Scholar
On the forward/backward symmetry of transition path time distributions in nonequilibrium systems
A. Berezhkovskii, D. Makarov
2019Journal of Chemical Physics33 citations Open access
Semantic Scholar
Molecular Kinetics in Condensed Phases
R. Elber, D. Makarov, H. Orland
202030 citations
Semantic Scholar
Theoretical and computational validation of the Kuhn barrier friction mechanism in unfolded proteins
S. Avdoshenko, A. Das, Rohit Satija, G. Papoian +1 more
2017Scientific Reports30 citations Open access
Semantic Scholar
Spatiotemporal correlations in denatured proteins: The dependence of fluorescence resonance energy transfer (FRET)-derived protein reconfiguration times on the location of the FRET probes.
D. Makarov
2010Journal of Chemical Physics28 citations
Semantic Scholar
Challenges in Inferring the Directionality of Active Molecular Processes from Single-Molecule Fluorescence Resonance Energy Transfer Trajectories.
A. Godec, D. Makarov
2022Journal of Physical Chemistry Letters27 citations
Semantic Scholar
Communication: Coordinate-dependent diffusivity from single molecule trajectories.
A. Berezhkovskii, D. Makarov
2017Journal of Chemical Physics27 citations Open access
Semantic Scholar
Barrier Crossing Dynamics from Single-Molecule Measurements.
D. Makarov
2021Journal of Physical Chemistry B26 citations
Semantic Scholar
Communication: Transition-path velocity as an experimental measure of barrier crossing dynamics.
A. Berezhkovskii, D. Makarov
2018Journal of Chemical Physics26 citations Open access
Semantic Scholar
Reconciling transition path time and rate measurements in reactions with large entropic barriers.
D. Makarov
2017Journal of Chemical Physics26 citations
Semantic Scholar
Failure of one-dimensional Smoluchowski diffusion models to describe the duration of conformational rearrangements in floppy, diffusive molecular systems: a case study of polymer cyclization.
Ryan R. Cheng, D. Makarov
2011Journal of Chemical Physics26 citations
Semantic Scholar
Communication: Does force spectroscopy of biomolecules probe their intrinsic dynamic properties?
D. Makarov
2014Journal of Chemical Physics25 citations
Semantic Scholar
Molecular Kinetics in Condensed Phases: Theory, Simulation, and Analysis
R. Elber, D. Makarov, H. Orland
202022 citations
Semantic Scholar
Mechanochemical Kinetics in Elastomeric Polymer Networks: Heterogeneity of Local Forces Results in Nonexponential Kinetics.
R. Adhikari, D. Makarov
2017Journal of Physical Chemistry B22 citations
Semantic Scholar
Charge-Site Dependent Dissociation of Hydrogen-Rich Radical Peptide Cations upon Vacuum UV Photoexcitation
J. Madsen, Ryan R. Cheng, Tamer S. Kaoud, K. Dalby +2 more
2012Chemistry22 citations Open access
Semantic Scholar
Universality in the timescales of internal loop formation in unfolded proteins and single-stranded oligonucleotides.
Ryan R. Cheng, Takanori Uzawa, K. Plaxco, D. Makarov
2010Biophysical Journal21 citations Open access
Semantic Scholar
Finding mechanochemical pathways and barriers without transition state search.
S. Avdoshenko, D. Makarov
2015Journal of Chemical Physics20 citations
Semantic Scholar
Sequence and temperature dependence of the end-to-end collision dynamics of single-stranded DNA.
Takanori Uzawa, T. Isoshima, Yoshihiro Ito, K. Ishimori +2 more
2013Biophysical Journal20 citations Open access
Semantic Scholar
Computation of transit times using the milestoning method with applications to polymer translocation.
Alexander T. Hawk, S. Konda, D. Makarov
2013Journal of Chemical Physics18 citations
Semantic Scholar
The Interplay of Affinity and Surface Tethering in Protein Recognition
Ali Imran, Brandon S Moyer, Aaron J. Wolfe, M. Cosgrove +2 more
2022Journal of Physical Chemistry Letters17 citations Open access
Semantic Scholar
On distributions of barrier crossing times as observed in single-molecule studies of biomolecules
A. Berezhkovskii, D. Makarov
2021Biophysics Reports17 citations Open access
Semantic Scholar
Dynamics of Disordered Proteins under Confinement: Memory Effects and Internal Friction.
A. Das, D. Makarov
2018Journal of Physical Chemistry B17 citations Open access
Semantic Scholar
From Nonequilibrium Single-Molecules Trajectories to Underlying Dynamics.
A. Berezhkovskii, D. Makarov
2020Journal of Physical Chemistry Letters16 citations
Semantic Scholar
On the calculation of internal forces in mechanically stressed polyatomic molecules.
S. Avdoshenko, S. Konda, D. Makarov
2014Journal of Chemical Physics16 citations
Semantic Scholar
Milestoning with transition memory.
Alexander T. Hawk, D. Makarov
2011Journal of Chemical Physics16 citations
Semantic Scholar
Transition Path Dynamics of a Dielectric Particle in a Bistable Optical Trap.
N. Zijlstra, D. Nettels, Rohit Satija, D. Makarov +1 more
2019Physical Review Letters15 citations Open access
Semantic Scholar
Rigorous coarse-graining for the dynamics of linear systems with applications to relaxation dynamics in proteins.
Reza Soheilifard, D. Makarov, G. Rodin
2011Journal of Chemical Physics15 citations
Semantic Scholar

Frequent co-authors

Invite them to SciRah by sharing their profile.

Ryan R. Cheng×7
Invite
Ryan R. Cheng — researcher profile on SciRah
A. Berezhkovskii×7
Invite
A. Berezhkovskii — researcher profile on SciRah
S. Konda×6
Invite
S. Konda — researcher profile on SciRah
Rohit Satija×6
Invite
Rohit Satija — researcher profile on SciRah

×5

Invite

K. Plaxco — researcher profile on SciRah

S. Avdoshenko×5

Invite

S. Avdoshenko — researcher profile on SciRah

Invite

D. Nettels — researcher profile on SciRah

Invite

B. Schuler — researcher profile on SciRah

Johnathan N. Brantley×3

Invite

Johnathan N. Brantley — researcher profile on SciRah

C. Bielawski×3

Invite

C. Bielawski — researcher profile on SciRah

Alexander T. Hawk×3

Invite

Alexander T. Hawk — researcher profile on SciRah

Takanori Uzawa×3

Invite

Takanori Uzawa — researcher profile on SciRah