Skip to content

Home Search Authors Pakistan News Saved

SciRah

SciRah does not host or store research papers. Results come live from free, official scholarly APIs, and every paper links back to its original source.

Data sources

OpenAlex
Semantic Scholar
Crossref
CORE
arXiv
PubMed

Privacy policy Terms of service

R. Elber · SciRah

Researcher profile · Semantic Scholar

R. Elber

Share profile

R. Elber — researcher profile on SciRah

h-index: 56
Works: 241
Citations: 10K

Most-cited papers

A Stochastic Algorithm for the Isobaric-Isothermal Ensemble with Ewald Summations for all Long Range Forces
Michele Di Pierro, R. Elber, B. Leimkuhler
2015Journal of Chemical Theory and Computation168 citations Open access
Semantic Scholar
Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment
M. Lensink, S. Velankar, A. Kryshtafovych, Shengua Huang +98 more
2016Proteins: Structure, Function, and Bioinformatics133 citations Open access
Semantic Scholar
Exact milestoning.
J. Bello-Rivas, R. Elber
2015Journal of Chemical Physics118 citations Open access
Semantic Scholar
RNA and its ionic cloud: solution scattering experiments and atomically detailed simulations.
Serdal Kirmizialtin, S. Pabit, S. Meisburger, L. Pollack +1 more
2012Biophysical Journal93 citations Open access
Semantic Scholar
Milestoning: An Efficient Approach for Atomically Detailed Simulations of Kinetics in Biophysics.
R. Elber
2020Annual Review of Biophysics75 citations Open access
Semantic Scholar
Perspective: Computer simulations of long time dynamics.
R. Elber
2016Journal of Chemical Physics69 citations Open access
Semantic Scholar
Improving ranking of models for protein complexes with side chain modeling and atomic potentials
Shruthi Viswanath, D. V. S. Ravikant, R. Elber
2013Proteins: Structure, Function, and Bioinformatics60 citations
Semantic Scholar
Unassisted Transport of N-acetyl-L-tryptophanamide through Membrane: Experiment and Simulation of Kinetics
A. E. Cardenas, G. Jas, K. Y. DeLeon, Wendy Hegefeld +2 more
2012Journal of Physical Chemistry B56 citations Open access
Semantic Scholar
Calculating Iso-Committor Surfaces as Optimal Reaction Coordinates with Milestoning
R. Elber, J. Bello-Rivas, Piao Ma, A. E. Cardenas +1 more
2017Entropy52 citations Open access
Semantic Scholar
Membrane Permeation of a Peptide: It is Better to be Positive
A. E. Cardenas, R. Shrestha, Lauren J. Webb, R. Elber
2015Journal of Physical Chemistry B51 citations Open access
Semantic Scholar
Polyelectrolyte properties of single stranded DNA measured using SAXS and single molecule FRET: beyond the wormlike chain model
S. Meisburger, Julie L. Sutton, Huimin Chen, S. Pabit +3 more
2013Biopolymers46 citations Open access
Semantic Scholar
Revealing the distinct folding phases of an RNA three-helix junction
A. Plumridge, Andrea M. Katz, George D. Calvey, R. Elber +2 more
2018Nucleic Acids Research43 citations Open access
Semantic Scholar
Physiological Calcium Concentrations Slow Dynamics at the Lipid-Water Interface.
Mason L Valentine, A. E. Cardenas, R. Elber, Carlos R. Baiz
2018Biophysical Journal37 citations Open access
Semantic Scholar
Computational study of peptide permeation through membrane: Searching for hidden slow variables
A. E. Cardenas, R. Elber
2013Molecular Physics35 citations Open access
Semantic Scholar
A new paradigm for atomically detailed simulations of kinetics in biophysical systems
R. Elber
2017Quarterly Reviews of Biophysics (print)33 citations Open access
Semantic Scholar
Modeling kinetics and equilibrium of membranes with fields: milestoning analysis and implication to permeation.
A. E. Cardenas, R. Elber
2014Journal of Chemical Physics33 citations Open access
Semantic Scholar
Molecular Kinetics in Condensed Phases
R. Elber, D. Makarov, H. Orland
202030 citations
Semantic Scholar
Enzyme Selectivity of HIV Reverse Transcriptase: Conformations, Ligands, and Free Energy Partition
Serdal Kirmizialtin, K. Johnson, R. Elber
2015Journal of Physical Chemistry B30 citations Open access
Semantic Scholar
The Transition Between Active and Inactive Conformations of Abl Kinase Studied by Rock Climbing and Milestoning
Brajesh Narayan, A. Fathizadeh, C. Templeton, Peng He +4 more
2019Biochimica et Biophysica Acta - General Subjects28 citations Open access
Semantic Scholar
Computer Simulations of the Dissociation Mechanism of Gleevec from Abl Kinase with Milestoning
Brajesh Narayan, Nicolae-Viorel Buchete, R. Elber
2021Journal of Physical Chemistry B27 citations Open access
Semantic Scholar
DOCK/PIERR: web server for structure prediction of protein-protein complexes.
Shruthi Viswanath, D. V. S. Ravikant, R. Elber
2014Methods in molecular biology27 citations
Semantic Scholar
Revisiting Molecular Dynamics on a CPU/GPU system: Water Kernel and SHAKE Parallelization
A. Peter Ruymgaart, R. Elber
2012Journal of Chemical Theory and Computation27 citations Open access
Semantic Scholar
Peptide Permeation Across a Phosphocholine Membrane: An Atomically Detailed Mechanism Determined Through Simulations and Supported by Experimentation
A. E. Cardenas, Chad I Drexler, R. Nechushtai, R. Mittler +3 more
2022Journal of Physical Chemistry B26 citations Open access
Semantic Scholar
The Impact of Protonation on Early Translocation of Anthrax Lethal Factor: Kinetics From Molecular Dynamics Simulations and Milestoning Theory
Piao Ma, A. E. Cardenas, M. Chaudhari, R. Elber +1 more
2017Journal of the American Chemical Society26 citations Open access
Semantic Scholar
Measurement of the Membrane Dipole Electric Field in DMPC Vesicles Using Vibrational Shifts of p-Cyanophenylalanine and Molecular Dynamics Simulations
R. Shrestha, A. E. Cardenas, R. Elber, Lauren J. Webb
2015Journal of Physical Chemistry B26 citations Open access
Semantic Scholar
Analyzing milestoning networks for molecular kinetics: definitions, algorithms, and examples.
Shruthi Viswanath, S. Kreuzer, A. E. Cardenas, R. Elber
2013Journal of Chemical Physics26 citations Open access
Semantic Scholar
Interfacial Dynamics in Lipid Membranes: The Effects of Headgroup Structures.
Mason L Valentine, Maya K Waterland, A. Fathizadeh, R. Elber +1 more
2021Journal of Physical Chemistry B24 citations
Semantic Scholar
Modeling molecular kinetics with Milestoning
R. Elber, A. Fathizadeh, Piao Ma, Hao Wang
2020WIREs Computational Molecular Science24 citations
Semantic Scholar
Ion Permeation Through a Phospholipid Membrane: Transition State, Path Splitting, and Calculation of Permeability
A. Fathizadeh, R. Elber
2018Journal of Chemical Theory and Computation24 citations Open access
Semantic Scholar
Catch bond-like kinetics of helix cracking: network analysis by molecular dynamics and milestoning.
S. Kreuzer, T. Moon, R. Elber
2013Journal of Chemical Physics23 citations Open access
Semantic Scholar
Molecular Kinetics in Condensed Phases: Theory, Simulation, and Analysis
R. Elber, D. Makarov, H. Orland
202022 citations
Semantic Scholar
A MATHEMATICAL FRAMEWORK FOR EXACT MILESTONING
D. Aristoff, J. Bello-Rivas, R. Elber
2015Multiscale Modeling & simulation22 citations Open access
Semantic Scholar
Optimizing Potentials for a Liquid Mixture: A New Force Field for a tert-Butanol and Water Solution
Michele Di Pierro, M. Mugnai, R. Elber
2014Journal of Physical Chemistry B22 citations Open access
Semantic Scholar
A mixed alchemical and equilibrium dynamics to simulate heterogeneous dense fluids: Illustrations for Lennard-Jones mixtures and phospholipid membranes.
A. Fathizadeh, R. Elber
2018Journal of Chemical Physics21 citations Open access
Semantic Scholar
Coiled-coil response to mechanical force: global stability and local cracking.
S. Kreuzer, R. Elber
2013Biophysical Journal21 citations Open access
Semantic Scholar
Conformations of an RNA Helix-Junction-Helix Construct Revealed by SAXS Refinement of MD Simulations.
Yen-Lin Chen, Tongsik Lee, R. Elber, L. Pollack
2019Biophysical Journal20 citations Open access
Semantic Scholar
On the Design of Peptides for Membrane Insertion: The Critical Role of Charge Separation
Sydney C Povilaitis, A. Fathizadeh, Molly R Kogan, R. Elber +1 more
2022Journal of Physical Chemistry B18 citations
Semantic Scholar
Why does RNA collapse? The importance of water in a simulation study of helix-junction-helix systems
C. Templeton, R. Elber
2018Journal of the American Chemical Society18 citations Open access
Semantic Scholar
Markovian and Non-Markovian Modeling of Membrane Dynamics with Milestoning
A. E. Cardenas, R. Elber
2016Journal of Physical Chemistry B18 citations Open access
Semantic Scholar
Comprehensive analysis of sequences of a protein switch
Szu-Hua Chen, J. Meller, R. Elber
2016Protein Science18 citations Open access
Semantic Scholar
Calcium-Lipid Interactions Observed with Isotope-Edited Infrared Spectroscopy.
Mason L Valentine, A. E. Cardenas, R. Elber, Carlos R. Baiz
2020Biophysical Journal17 citations Open access
Semantic Scholar
Extension of a Protein Docking Algorithm to Membranes and Applications to Amyloid Precursor Protein Dimerization
Shruthi Viswanath, Laura Domínguez, Leigh Foster, John E. Straub +1 more
2015Proteins: Structure, Function, and Bioinformatics17 citations Open access
Semantic Scholar
Defect Formation and Peptide Permeation across Phospholipid Membranes.
R. Elber
2023Journal of Physical Chemistry B16 citations
Semantic Scholar
Pyrophosphate Release in the Protein HIV Reverse Transcriptase
Murat Atis, K. Johnson, R. Elber
2017Journal of Physical Chemistry B16 citations Open access
Semantic Scholar
MOLECULAR DYNAMICS STUDIES OF MODULAR POLYKETIDE SYNTHASE KETOREDUCTASE STEREOSPECIFICITY
M. Mugnai, Yue Shi, A. Keatinge-Clay, R. Elber
2015Biochemistry16 citations Open access
Semantic Scholar
Extracting the diffusion tensor from molecular dynamics simulation with Milestoning.
M. Mugnai, R. Elber
2015Journal of Chemical Physics16 citations Open access
Semantic Scholar
The energy landscape of a protein switch.
Szu-Hua Chen, R. Elber
2014Physical Chemistry, Chemical Physics - PCCP16 citations
Semantic Scholar
Role of Long-range Allosteric Communication in Determining the Stability and Disassembly of SARS-COV-2 in Complex with ACE2
M. Mugnai, C. Templeton, R. Elber, D. Thirumalai
2020bioRxiv15 citations Open access
Semantic Scholar
Preferential Equilibrium Partitioning of Positively Charged Tryptophan into Phosphatidylcholine Bilayer Membranes
Cari M. Anderson, A. E. Cardenas, R. Elber, Lauren J. Webb
2018Journal of Physical Chemistry B15 citations Open access
Semantic Scholar
Simulations of thermodynamics and kinetics on rough energy landscapes with Milestoning
J. Bello-Rivas, R. Elber
2015Journal of Computational Chemistry15 citations Open access
Semantic Scholar

Frequent co-authors

Invite them to SciRah by sharing their profile.

A. E. Cardenas×13
Invite
A. E. Cardenas — researcher profile on SciRah
A. Fathizadeh×7
Invite
A. Fathizadeh — researcher profile on SciRah
Shruthi Viswanath×5
Invite
Shruthi Viswanath — researcher profile on SciRah
Lauren J. Webb×5
Invite
Lauren J. Webb — researcher profile on SciRah

×4

Invite

J. Bello-Rivas — researcher profile on SciRah

Serdal Kirmizialtin×4

Invite

Serdal Kirmizialtin — researcher profile on SciRah

Invite

L. Pollack — researcher profile on SciRah

Invite

M. Mugnai — researcher profile on SciRah

Invite

Piao Ma — researcher profile on SciRah

Mason L Valentine×3

Invite

Mason L Valentine — researcher profile on SciRah

Carlos R. Baiz×3

Invite

Carlos R. Baiz — researcher profile on SciRah

C. Templeton×3

Invite

C. Templeton — researcher profile on SciRah