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B. Baker · SciRah

Researcher profile · Semantic Scholar

B. Baker

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B. Baker — researcher profile on SciRah

h-index: 54
Works: 100
Citations: 17K

Most-cited papers

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
R. Bowers, N. Kyrpides, R. Stepanauskas, M. Harmon-Smith +50 more
2017Nature Biotechnology2,286 citations Open access
Semantic Scholar
A new view of the tree of life
L. Hug, B. Baker, Karthik Anantharaman, C. Brown +13 more
2016Nature Microbiology2,014 citations Open access
Semantic Scholar
Microbial communities in acid mine drainage.
B. Baker, J. Banfield
2003FEMS Microbiology Ecology1,141 citations Open access
Semantic Scholar
Asgard archaea illuminate the origin of eukaryotic cellular complexity
Katarzyna Zaremba-Niedźwiedzka, Eva F. Caceres, J. Saw, Disa Bäckström +13 more
2017Nature1,014 citations Open access
Semantic Scholar
Community Proteomics of a Natural Microbial Biofilm
Rachna J. Ram, N. Verberkmoes, M. Thelen, G. Tyson +5 more
2005Science786 citations Open access
Semantic Scholar
A genomic catalog of Earth’s microbiomes
Stephen Nayfach, S. Roux, R. Seshadri, D. Udwary +263 more
2020Nature Biotechnology783 citations Open access
Semantic Scholar
Community-wide analysis of microbial genome sequence signatures
Gregory J. Dick, Anders F. Andersson, B. Baker, S. Simmons +3 more
2009Genome Biology566 citations Open access
Semantic Scholar
Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote
G. Schönknecht, Wei-Hua Chen, C. Ternes, G. Barbier +14 more
2013Science463 citations Open access
Semantic Scholar
Diversity, ecology and evolution of Archaea
B. Baker, Valerie de Anda, K. Seitz, Nina Dombrowski +2 more
2020Nature Microbiology444 citations
Semantic Scholar
Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria
B. Baker, C. Lazar, A. Teske, G. Dick
2015Microbiome372 citations Open access
Semantic Scholar
EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
C. Miller, B. Baker, B. Thomas, S. Singer +1 more
2011Genome Biology357 citations Open access
Semantic Scholar
Enigmatic, ultrasmall, uncultivated Archaea
B. Baker, L. Comolli, G. Dick, L. Hauser +6 more
2010Proceedings of the National Academy of Sciences of the United States of America298 citations Open access
Semantic Scholar
Acid mine drainage biogeochemistry at Iron Mountain, California
G. Druschel, B. Baker, T. Gihring, J. Banfield
2004Geochemical Transactions291 citations Open access
Semantic Scholar
Genome-Directed Isolation of the Key Nitrogen Fixer Leptospirillum ferrodiazotrophum sp. nov. from an Acidophilic Microbial Community
G. Tyson, Ian Lo, B. Baker, E. Allen +2 more
2005Applied and Environmental Microbiology264 citations Open access
Semantic Scholar
Expansive microbial metabolic versatility and biodiversity in dynamic Guaymas Basin hydrothermal sediments
Nina Dombrowski, A. Teske, B. Baker
2018Nature Communications246 citations Open access
Semantic Scholar
Lineages of Acidophilic Archaea Revealed by Community Genomic Analysis
B. Baker, G. Tyson, R. Webb, J. Flanagan +3 more
2006Science237 citations
Semantic Scholar
Reconstructing metabolic pathways of hydrocarbon-degrading bacteria from the Deepwater Horizon oil spill
Nina Dombrowski, J. A. Donaho, T. Gutierrez, K. Seitz +2 more
2016Nature Microbiology219 citations Open access
Semantic Scholar
Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes
Laura Eme, D. Tamarit, Eva F. Caceres, Courtney W. Stairs +21 more
2023bioRxiv211 citations Open access
Semantic Scholar
Genomic evidence for distinct carbon substrate preferences and ecological niches of Bathyarchaeota in estuarine sediments.
C. Lazar, B. Baker, K. Seitz, A. Hyde +3 more
2016Environmental Microbiology209 citations Open access
Semantic Scholar
The microbiology of deep-sea hydrothermal vent plumes: ecological and biogeographic linkages to seafloor and water column habitats
G. Dick, Karthik Anantharaman, B. Baker, Meng Li +2 more
2013Frontiers in Microbiology206 citations Open access
Semantic Scholar
Community Genomic and Proteomic Analyses of Chemoautotrophic Iron-Oxidizing “Leptospirillum rubarum” (Group II) and “Leptospirillum ferrodiazotrophum” (Group III) Bacteria in Acid Mine Drainage Biofilms
Daniela S. Aliaga Goltsman, Vincent J. Denef, S. Singer, N. Verberkmoes +13 more
2009Applied and Environmental Microbiology193 citations Open access
Semantic Scholar
Proposal of the reverse flow model for the origin of the eukaryotic cell based on comparative analyses of Asgard archaeal metabolism
A. Spang, Courtney W. Stairs, Nina Dombrowski, Laura Eme +5 more
2019Nature Microbiology192 citations Open access
Semantic Scholar
Asgard archaea capable of anaerobic hydrocarbon cycling
K. Seitz, Nina Dombrowski, Laura Eme, A. Spang +5 more
2019Nature Communications190 citations Open access
Semantic Scholar
Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction
K. Seitz, C. Lazar, K. Hinrichs, A. Teske +1 more
2016The ISME Journal181 citations Open access
Semantic Scholar
Desulfotomaculum and Methanobacterium spp. Dominate a 4- to 5-Kilometer-Deep Fault
D. Moser, T. Gihring, F. Brockman, J. Fredrickson +11 more
2005Applied and Environmental Microbiology179 citations Open access
Semantic Scholar
Genomic insights into potential interdependencies in microbial hydrocarbon and nutrient cycling in hydrothermal sediments
Nina Dombrowski, K. Seitz, A. Teske, B. Baker
2017Microbiome177 citations Open access
Semantic Scholar
Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea
B. Baker, J. Saw, Anders E. Lind, C. Lazar +3 more
2016Nature Microbiology174 citations Open access
Semantic Scholar
Metabolically Active Eukaryotic Communities in Extremely Acidic Mine Drainage
B. Baker, Michelle A. Lutz, S. Dawson, P. Bond +1 more
2004Applied and Environmental Microbiology171 citations Open access
Semantic Scholar
Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities
Vincent J. Denef, L. Kalnejais, Ryan S. Mueller, P. Wilmes +5 more
2010Proceedings of the National Academy of Sciences of the United States of America167 citations Open access
Semantic Scholar
Hydrocarbon degradation and response of seafloor sediment bacterial community in the northern Gulf of Mexico to light Louisiana sweet crude oil
H. Bacosa, D. Erdner, B. Rosenheim, Prateek Shetty +3 more
2018The ISME Journal146 citations Open access
Semantic Scholar
Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea
Meng Li, B. Baker, Karthik Anantharaman, Sunit Jain +2 more
2015Nature Communications141 citations Open access
Semantic Scholar
Genome-Resolved Metagenomic Analysis Reveals Roles for Candidate Phyla and Other Microbial Community Members in Biogeochemical Transformations in Oil Reservoirs
Ping Hu, L. Tom, Andrea Singh, B. Thomas +4 more
2016mBio132 citations Open access
Semantic Scholar
Roadmap for naming uncultivated Archaea and Bacteria
A. Murray, J. Freudenstein, S. Gribaldo, R. Hatzenpichler +61 more
2020Nature Microbiology131 citations Open access
Semantic Scholar
Large-scale protein level comparison of Deltaproteobacteria reveals cohesive metabolic groups
Marguerite V. Langwig, Valerie de Anda, Nina Dombrowski, K. Seitz +4 more
2021The ISME Journal130 citations Open access
Semantic Scholar
Related assemblages of sulphate-reducing bacteria associated with ultradeep gold mines of South Africa and deep basalt aquifers of Washington State.
B. Baker, D. Moser, B. MacGregor, S. Fishbain +12 more
2003Environmental Microbiology125 citations
Semantic Scholar
Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon
L. Comolli, B. Baker, K. Downing, C. Siegerist +1 more
2009The ISME Journal120 citations
Semantic Scholar
Insights into the Diversity of Eukaryotes in Acid Mine Drainage Biofilm Communities
B. Baker, G. Tyson, Lindsey Goosherst, J. Banfield
2009Applied and Environmental Microbiology118 citations Open access
Semantic Scholar
Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota
Lin-Xing Chen, Celia Méndez-García, Nina Dombrowski, L. E. Servín-Garcidueñas +14 more
2017The ISME Journal115 citations Open access
Semantic Scholar
Community transcriptomic assembly reveals microbes that contribute to deep-sea carbon and nitrogen cycling
B. Baker, C. Sheik, Chris A Taylor, Sunit Jain +3 more
2013The ISME Journal111 citations Open access
Semantic Scholar
Temporal Shifts in the Geochemistry and Microbial Community Structure of an Ultradeep Mine Borehole Following Isolation
Duane P. Moser, T. Onstott, J. K. Fredrickson, F. Brockman +16 more
2003108 citations
Semantic Scholar
Genome-enabled transcriptomics reveals archaeal populations that drive nitrification in a deep-sea hydrothermal plume
B. Baker, R. Lesniewski, G. Dick
2012The ISME Journal104 citations Open access
Semantic Scholar
Extremely Acidophilic Protists from Acid Mine Drainage Host Rickettsiales-Lineage Endosymbionts That Have Intervening Sequences in Their 16S rRNA Genes
B. Baker, P. Hugenholtz, S. Dawson, J. Banfield
2003Applied and Environmental Microbiology103 citations Open access
Semantic Scholar
Comparative genomic inference suggests mixotrophic lifestyle for Thorarchaeota
Yang Liu, Zhi-Chao Zhou, Jie Pan, B. Baker +2 more
2018The ISME Journal96 citations Open access
Semantic Scholar
Microbial iron uptake as a mechanism for dispersing iron from deep-sea hydrothermal vents
Meng Li, B. Toner, B. Baker, J. Breier +2 more
2014Nature Communications96 citations Open access
Semantic Scholar
Metabolic Roles of Uncultivated Bacterioplankton Lineages in the Northern Gulf of Mexico “Dead Zone”
J. Thrash, K. Seitz, B. Baker, B. Temperton +4 more
2016mBio80 citations Open access
Semantic Scholar
New Microbial Biodiversity in Marine Sediments.
B. Baker, K. Appler, Xianzhe Gong
2020Annual Review of Marine Science77 citations
Semantic Scholar
Diversity, Ecology, and Prevalence of Antimicrobials in Nature
Megan M. Mullis, I. Rambo, B. Baker, B. Reese
2019Frontiers in Microbiology77 citations Open access
Semantic Scholar
Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi) in Sulfur Cycling
Kenneth Wasmund, Myriel Cooper, Lars Schreiber, K. Lloyd +8 more
2016mBio75 citations Open access
Semantic Scholar
Origins and diversification of sulfate-respiring microorganisms
D. Stahl, S. Fishbain, M. Klein, B. Baker +1 more
2002Antonie van Leeuwenhoek74 citations
Semantic Scholar
Correction: Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
R. Bowers, N. Kyrpides, R. Stepanauskas, M. Harmon-Smith +50 more
2018Nature Biotechnology66 citations Open access
Semantic Scholar

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