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D. Cook · SciRah

Researcher profile · Semantic Scholar

D. Cook

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D. Cook — researcher profile on SciRah

h-index: 64
Works: 180
Citations: 19K

Most-cited papers

The Medicago Genome Provides Insight into the Evolution of Rhizobial Symbioses
N. Young, F. Debelle, G. Oldroyd, R. Geurts +120 more
2011Nature1,246 citations Open access
Semantic Scholar
Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
R. Varshney, Chi Song, R. Saxena, Sarwar Azam +45 more
2013Nature Biotechnology1,213 citations Open access
Semantic Scholar
Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers
R. Varshney, Wenbin Chen, Yupeng Li, A. Bharti +27 more
2011Nature Biotechnology822 citations Open access
Semantic Scholar
MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs.
J. Zhai, D. Jeong, E. De Paoli, Sunhee Park +12 more
2011Genes & Development681 citations Open access
Semantic Scholar
Advances in Arachis genomics for peanut improvement.
M. Pandey, E. Monyo, P. Ozias-Akins, Xuanquiang Liang +10 more
2012Biotechnology Advances279 citations Open access
Semantic Scholar
Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa
Pavana J Hiremath, A. Farmer, S. Cannon, Jimmy E. Woodward +17 more
2011Plant Biotechnology Journal275 citations Open access
Semantic Scholar
Back to the wilds: tapping evolutionary adaptations for resilient crops through systematic hybridization with crop wild relatives.
Emily J. Warschefsky, R. Penmetsa, D. Cook, E. V. von Wettberg
2014American-Eurasian journal of botany252 citations Open access
Semantic Scholar
Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes
Pavana J Hiremath, Ashish Kumar, R. Penmetsa, A. Farmer +10 more
2012Plant Biotechnology Journal249 citations Open access
Semantic Scholar
Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome
Spurthi N. Nayak, Hong-Yan Zhu, Nicy Varghese, S. Datta +11 more
2010Theoretical and Applied Genetics249 citations Open access
Semantic Scholar
Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.)
M. Thudi, Abhishek Bohra, Spurthi N. Nayak, Nicy Varghese +14 more
2011PLoS ONE186 citations Open access
Semantic Scholar
Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation
E. V. von Wettberg, P. Chang, F. Başdemir, N. Carrasquila-Garcia +45 more
2018Nature Communications177 citations Open access
Semantic Scholar
Pigeonpea genomics initiative (PGI): an international effort to improve crop productivity of pigeonpea (Cajanus cajan L.)
R. Varshney, R. Penmetsa, S. Dutta, P. Kulwal +26 more
2009Molecular breeding158 citations Open access
Semantic Scholar
Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.)
Abhishek Bohra, A. Dubey, R. Saxena, R. Penmetsa +15 more
2011BMC Plant Biology157 citations Open access
Semantic Scholar
Deep Sequencing of the Medicago truncatula Root Transcriptome Reveals a Massive and Early Interaction between Nodulation Factor and Ethylene Signals1[OPEN]
Estíbaliz Larrainzar, Brendan K. Riely, Sang Cheol Kim, N. Carrasquilla-Garcia +13 more
2015Plant Physiology145 citations Open access
Semantic Scholar
Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.)
Neha Gujaria, Ashish Kumar, Preeti Dauthal, A. Dubey +11 more
2011Theoretical and Applied Genetics145 citations Open access
Semantic Scholar
The CCAAT box-binding transcription factor NF-YA1 controls rhizobial infection
P. Laporte, Agnès Lepage, J. Fournier, O. Catrice +7 more
2013Journal of Experimental Botany137 citations Open access
Semantic Scholar
Medicago truncatula mtpt4 mutants reveal a role for nitrogen in the regulation of arbuscule degeneration in arbuscular mycorrhizal symbiosis.
H. Javot, R. Penmetsa, Florence Breuillin, Kishor K. Bhattarai +5 more
2011The Plant Journal125 citations Open access
Semantic Scholar
Water deficit modulates the response of Vitis vinifera to the Pierce's disease pathogen Xylella fastidiosa.
Hong-Kyu Choi, Alberto B. Iandolino, F. G. da Silva, D. Cook
2013Molecular Plant-Microbe Interactions122 citations
Semantic Scholar
Symbiotic Rhizobia Bacteria Trigger a Change in Localization and Dynamics of the Medicago truncatula Receptor Kinase LYK3[W][OA]
Cara H. Haney, Brendan K. Riely, D. Tricoli, D. Cook +2 more
2011The Plant Cell116 citations Open access
Semantic Scholar
An intra-specific consensus genetic map of pigeonpea [Cajanus cajan (L.) Millspaugh] derived from six mapping populations
Abhishek Bohra, R. Saxena, B. N. Gnanesh, K. Saxena +5 more
2012Theoretical and Applied Genetics114 citations Open access
Semantic Scholar
Large-Scale Development of Cost-Effective Single-Nucleotide Polymorphism Marker Assays for Genetic Mapping in Pigeonpea and Comparative Mapping in Legumes
R. Saxena, R. Penmetsa, H. Upadhyaya, Ashish Kumar +8 more
2012DNA Research110 citations Open access
Semantic Scholar
Global-level population genomics reveals differential effects of geography and phylogeny on horizontal gene transfer in soil bacteria
Alex Greenlon, P. Chang, Zehara Mohammed Damtew, A. Muleta +22 more
2019Proceedings of the National Academy of Sciences of the United States of America107 citations Open access
Semantic Scholar
Genetic Patterns of Domestication in Pigeonpea (Cajanus cajan (L.) Millsp.) and Wild Cajanus Relatives
Mulualem T. Kassa, R. Penmetsa, N. Carrasquilla-Garcia, B. K. Sarma +5 more
2012PLoS ONE105 citations Open access
Semantic Scholar
A pigeonpea gene confers resistance to Asian soybean rust in soybean
C. Kawashima, Gustavo Augusto Guimarães, S. R. Nogueira, D. MacLean +22 more
2016Nature Biotechnology103 citations Open access
Semantic Scholar
A high-throughput SNP marker system for parental polymorphism screening, and diversity analysis in common bean (Phaseolus vulgaris L.)
M. W. Blair, Andrés J. Cortés, R. Penmetsa, A. Farmer +2 more
2013Theoretical and Applied Genetics95 citations
Semantic Scholar
A high-density genetic map of Arachis duranensis, a diploid ancestor of cultivated peanut
E. Nagy, Yufang Guo, Shunxue Tang, J. Bowers +14 more
2012BMC Genomics73 citations Open access
Semantic Scholar
Multiple post-domestication origins of kabuli chickpea through allelic variation in a diversification-associated transcription factor.
R. Penmetsa, N. Carrasquilla-Garcia, Emily M. Bergmann, Lisa Vance +10 more
2016New Phytologist59 citations Open access
Semantic Scholar
Efficacy of colostrum replacer versus maternal colostrum on immunological status, health, and growth of preweaned dairy calves.
A. Lago, M. Socha, A. Geiger, D. Cook +4 more
2018Journal of Dairy Science57 citations Open access
Semantic Scholar
Genomic rearrangements have consequences for introgression breeding as revealed by genome assemblies of wild and cultivated lentil species
L. Ramsay, C. Koh, S. Kagale, Dong-Ying Gao +24 more
2021bioRxiv51 citations Open access
Semantic Scholar
The ecological genomic basis of salinity adaptation in Tunisian Medicago truncatula
M. Friesen, E. V. von Wettberg, M. Badri, K. Moriuchi +14 more
2014BMC Genomics51 citations Open access
Semantic Scholar
The INCREASE project: Intelligent Collections of food‐legume genetic resources for European agrofood systems
E. Bellucci, Orlando Mario Aguilar, Saleh Alseekh, K. Bett +36 more
2021The Plant Journal49 citations Open access
Semantic Scholar
Characterization of zinc transport by divalent metal transporters of the ZIP family from the model legume Medicago truncatula
B. W. Stephens, D. Cook, M. Grusak
2011Biometals49 citations
Semantic Scholar
Arachis batizocoi: a study of its relationship to cultivated peanut (A. hypogaea) and its potential for introgression of wild genes into the peanut crop using induced allotetraploids
S. Leal-Bertioli, S. P. Santos, Karinne M. Dantas, Peter W. Inglis +11 more
2014Annals of Botany48 citations Open access
Semantic Scholar
Distribution and factors influencing chickpea wilt and root rot epidemics in Ethiopia
Sultan Yimer, Seid Ahmed, C. Fininsa, N. Tadesse +2 more
201844 citations
Semantic Scholar
Altered Expression of an FT Cluster Underlies a Major Locus Controlling Domestication-Related Changes to Chickpea Phenology and Growth Habit
Raúl Ortega, V. Hecht, J. Freeman, J. Rubio +6 more
2019Frontiers in Plant Science43 citations Open access
Semantic Scholar
Genetic mapping of legume orthologs reveals high conservation of synteny between lentil species and the sequenced genomes of Medicago and chickpea
Neha Gujaria-Verma, S. Vail, N. Carrasquilla-Garcia, R. Penmetsa +4 more
2014Frontiers in Plant Science41 citations Open access
Semantic Scholar
Races of the Celery Pathogen Fusarium oxysporum f. sp. apii Are Polyphyletic.
L. Epstein, S. Kaur, P. Chang, N. Carrasquilla-Garcia +4 more
2017Phytopathology39 citations Open access
Semantic Scholar
Distinct Subgroups of Cicer echinospermum Are Associated with Hybrid Sterility and Breakdown in Interspecific Crosses with Cultivated Chickpea
A. Kahraman, Anamika Pandey, Mohd. Kamran Khan, D. Lindsay +10 more
201739 citations Open access
Semantic Scholar
From bits to bites: Advancement of the Germinate platform to support prebreeding informatics for crop wild relatives
S. Raubach, B. Kilian, K. Dreher, A. Amri +30 more
2020Crop science35 citations Open access
Semantic Scholar
Identification of legume RopGEF gene families and characterization of a Medicago truncatula RopGEF mediating polar growth of root hairs.
Brendan K. Riely, Heng-bin He, M. Venkateshwaran, B. Sarma +3 more
2011The Plant Journal34 citations Open access
Semantic Scholar
Population genomic analysis of Tunisian Medicago truncatula reveals candidates for local adaptation.
M. Friesen, Matilde A. Cordeiro, R. Penmetsa, M. Badri +4 more
2010The Plant Journal34 citations Open access
Semantic Scholar
Gene co-expression analysis reveals transcriptome divergence between wild and cultivated chickpea under drought stress.
Susan M Moenga, Yun-Peng Gai, N. Carrasquilla-Garcia, L. Perilla-Henao +1 more
2020The Plant Journal32 citations Open access
Semantic Scholar
Genomic and phenotypic analysis of Vavilov’s historic landraces reveals the impact of environment and genomic islands of agronomic traits
Elena Plekhanova, M. Vishnyakova, S. Bulyntsev, P. Chang +7 more
2017Scientific Reports29 citations Open access
Semantic Scholar
Whole-genome scanning for mapping determinacy in Pigeonpea (Cajanus spp.)
R R Mir, R. Saxena, K. Saxena, H. Upadhyaya +3 more
201227 citations
Semantic Scholar
Effect of supplementing Saccharomyces cerevisiae fermentation product in sow diets on reproductive performance in a commercial environment
S. Kim, M. Brandherm, Betsy Newton, D. Cook +2 more
201027 citations
Semantic Scholar
Functional Dissection of the Chickpea (Cicer arietinum L.) Stay-Green Phenotype Associated with Molecular Variation at an Ortholog of Mendel’s I Gene for Cotyledon Color: Implications for Crop Production and Carotenoid Biofortification
K. Sivasakthi, Edward Marques, Ng'andwe Kalungwana, N. Carrasquilla-Garcia +16 more
2019International Journal of Molecular Sciences24 citations Open access
Semantic Scholar
Healthy and sustainable diets for future generations
H. Green, P. Broun, D. Cook, K. Cooper +4 more
2018The Journal of the Science of Food and Agriculture24 citations Open access
Semantic Scholar
Parental environments and interactions with conspecifics alter salinity tolerance of offspring in the annual Medicago truncatula
Brenna M. Castro, K. Moriuchi, M. Friesen, M. Badri +4 more
201324 citations Open access
Semantic Scholar
Hiding in plain sight: Genome-wide recombination and a dynamic accessory genome drive diversity in Fusarium oxysporum f.sp. ciceris
A. Fayyaz, G. Robinson, Peter L. Chang, Dagnachew Bekele +10 more
2023Proceedings of the National Academy of Sciences of the United States of America23 citations Open access
Semantic Scholar
The future of legume genetic data resources: Challenges, opportunities, and priorities
G. Bauchet, K. Bett, Connor Cameron, J. Campbell +27 more
201923 citations Open access
Semantic Scholar

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