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D. MacLean · SciRah

Researcher profile · Semantic Scholar

D. MacLean

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D. MacLean — researcher profile on SciRah

h-index: 40
Works: 98
Citations: 9,208

Most-cited papers

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
B. Haas, S. Kamoun, M. Zody, Rays H. Y. Jiang +92 more
2009Nature1,469 citations Open access
Semantic Scholar
Assemblathon 1: a competitive assessment of de novo short read assembly methods.
D. Earl, K. Bradnam, J. S. St John, A. Darling +67 more
2011Genome Research548 citations Open access
Semantic Scholar
Genome Evolution Following Host Jumps in the Irish Potato Famine Pathogen Lineage
S. Raffaele, R. Farrer, L. Cano, D. Studholme +9 more
2010Science438 citations
Semantic Scholar
Genome Analyses of an Aggressive and Invasive Lineage of the Irish Potato Famine Pathogen
D. Cooke, L. Cano, S. Raffaele, R. Bain +20 more
2012PLoS Pathogens424 citations Open access
Semantic Scholar
PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update
P. Durek, Robert Schmidt, J. Heazlewood, Alexandra Jones +4 more
2009Nucleic Acids Res.392 citations Open access
Semantic Scholar
Application of 'next-generation' sequencing technologies to microbial genetics
D. MacLean, Jonathan D. G. Jones, D. Studholme
2009Nature Reviews Microbiology387 citations
Semantic Scholar
Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations
Florian Jupe, K. Witek, Walter Verweij, J. Śliwka +9 more
2013The Plant Journal376 citations Open access
Semantic Scholar
Control of plant organ size by KLUH/CYP78A5-dependent intercellular signaling.
E. Anastasiou, Sabine Kenz, M. Gerstung, D. MacLean +3 more
2007Developmental Cell368 citations Open access
Semantic Scholar
The calcium-permeable channel OSCA1.3 regulates plant stomatal immunity
Kathrin Thor, Shushu Jiang, Erwan Michard, J. George +22 more
2020Nature297 citations Open access
Semantic Scholar
A toolkit for analysing large-scale plant small RNA datasets
S. Moxon, F. Schwach, T. Dalmay, D. MacLean +2 more
2008Bioinform.288 citations Open access
Semantic Scholar
Gene Gain and Loss during Evolution of Obligate Parasitism in the White Rust Pathogen of Arabidopsis thaliana
E. Kemen, Anastasia Gardiner, T. Schultz-Larsen, Ariane Kemen +7 more
2011PLoS Biology272 citations Open access
Semantic Scholar
Spatio-Temporal Cellular Dynamics of the Arabidopsis Flagellin Receptor Reveal Activation Status-Dependent Endosomal Sorting[C][W]
Martina Beck, Ji Zhou, C. Faulkner, D. MacLean +1 more
2012The Plant Cell266 citations Open access
Semantic Scholar
The calcium-dependent protein kinase CPK28 buffers plant immunity and regulates BIK1 turnover.
J. Monaghan, Susanne Matschi, Oluwaseyi Shorinola, Hanna Rovenich +7 more
2014Cell Host and Microbe232 citations Open access
Semantic Scholar
The microRNA miR393 re-directs secondary metabolite biosynthesis away from camalexin and towards glucosinolates.
Alexandre Robert-Seilaniantz, D. MacLean, Y. Jikumaru, L. Hill +3 more
2011The Plant Journal216 citations Open access
Semantic Scholar
Plant immune and growth receptors share common signalling components but localise to distinct plasma membrane nanodomains
C. Bücherl, Iris K. Jarsch, C. Schudoma, C. Segonzac +5 more
2017eLife208 citations Open access
Semantic Scholar
Coordination of plastid and nuclear gene expression.
J. Gray, James A. Sullivan, Jun-Hui Wang, Cheryl A. Jerome +1 more
2003Philosophical transactions of the Royal Society of London. Series B, Biological sciences198 citations Open access
Semantic Scholar
Disruption of two defensive signaling pathways by a viral RNA silencing suppressor.
Mathew G. Lewsey, A. Murphy, D. MacLean, Neil Dalchau +8 more
2010Molecular Plant-Microbe Interactions184 citations Open access
Semantic Scholar
Protein engineering expands the effector recognition profile of a rice NLR immune receptor
Juan Carlos de la Concepción, M. Franceschetti, D. MacLean, R. Terauchi +2 more
2019bioRxiv139 citations Open access
Semantic Scholar
The F-Box Protein ACRE189/ACIF1 Regulates Cell Death and Defense Responses Activated during Pathogen Recognition in Tobacco and Tomato[W]
H. A. van den Burg, D. Tsitsigiannis, Owen Rowland, Jane Lo +4 more
2008The Plant Cell Online135 citations Open access
Semantic Scholar
A draft genome sequence of Pseudomonas syringae pv. tomato T1 reveals a type III effector repertoire significantly divergent from that of Pseudomonas syringae pv. tomato DC3000.
N. Almeida, Shuang-Chun Yan, M. Lindeberg, D. Studholme +14 more
2009Molecular Plant-Microbe Interactions134 citations
Semantic Scholar
The Arabidopsis Protein Phosphatase PP2C38 Negatively Regulates the Central Immune Kinase BIK1
Daniel Couto, Roda Niebergall, Xiangxiu Liang, C. Bücherl +11 more
2016PLoS Pathogens122 citations Open access
Semantic Scholar
The transcriptional landscape of plant infection by the rice blast fungus Magnaporthe oryzae reveals distinct families of temporally co-regulated and structurally conserved effectors
Xia Yan, Bo-Zeng Tang, L. Ryder, D. MacLean +7 more
2022bioRxiv116 citations Open access
Semantic Scholar
A Putative Phosphatase, LSF1, Is Required for Normal Starch Turnover in Arabidopsis Leaves1[W][OA]
Sylviane Comparot-Moss, Oliver Kötting, Michaela Stettler, C. Edner +11 more
2009Plant Physiology115 citations Open access
Semantic Scholar
The ash dieback invasion of Europe was founded by two genetically divergent individuals
M. McMullan, Maryam Rafiqi, G. Kaithakottil, B. Clavijo +27 more
2018Nature Ecology & Evolution106 citations Open access
Semantic Scholar
A pigeonpea gene confers resistance to Asian soybean rust in soybean
C. Kawashima, Gustavo Augusto Guimarães, S. R. Nogueira, D. MacLean +22 more
2016Nature Biotechnology103 citations Open access
Semantic Scholar
A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528
D. Studholme, Selena Gimenez Ibanez, D. MacLean, J. Dangl +2 more
2009BMC Genomics100 citations Open access
Semantic Scholar
Plant pathogens convergently evolved to counteract redundant nodes of an NLR immune receptor network
L. Derevnina, Mauricio P. Contreras, Hiroaki Adachi, Jessica L Upson +12 more
2021bioRxiv96 citations Open access
Semantic Scholar
bio-samtools 2: a package for analysis and visualization of sequence and alignment data with SAMtools in Ruby
G. Etherington, R. Ramirez-Gonzalez, D. MacLean
2015Bioinform.94 citations Open access
Semantic Scholar
Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.
Alexandra M. E. Jones, D. MacLean, D. Studholme, Antonio Serna-Sanz +3 more
2009Journal of Proteomics92 citations
Semantic Scholar
Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments
R. Ramirez-Gonzalez, R. Bonnal, M. Cáccamo, D. MacLean
2012Source Code for Biology and Medicine91 citations Open access
Semantic Scholar
Using CRISPR/Cas9 genome editing in tomato to create a gibberellin‐responsive dominant dwarf DELLA allele
Laurence Tomlinson, Ying Yang, R. Emenecker, M. Smoker +6 more
2018Plant Biotechnology Journal84 citations Open access
Semantic Scholar
Genome-wide sequencing data reveals virulence factors implicated in banana Xanthomonas wilt.
D. Studholme, E. Kemen, D. MacLean, S. Schornack +5 more
2010FEMS Microbiology Letters72 citations
Semantic Scholar
Coval: Improving Alignment Quality and Variant Calling Accuracy for Next-Generation Sequencing Data
Shunichi Kosugi, Satoshi Natsume, Kentaroh Yoshida, D. MacLean +3 more
2013PLoS ONE64 citations Open access
Semantic Scholar
Genome-Wide Analysis of Plastid Gene Expression in Potato Leaf Chloroplasts and Tuber Amyloplasts: Transcriptional and Posttranscriptional Control1[W]
V. Valkov, N. Scotti, Sabine Kahlau, D. MacLean +4 more
2009Plant Physiology61 citations Open access
Semantic Scholar
PhosCalc: A tool for evaluating the sites of peptide phosphorylation from Mass Spectrometer data
D. MacLean, Michael A. Burrell, D. Studholme, Alexandra Jones
2008BMC Research Notes56 citations Open access
Semantic Scholar
Arabidopsis downy mildew effector HaRxL106 suppresses plant immunity by binding to RADICAL‐INDUCED CELL DEATH1
L. Wirthmueller, S. Asai, Ghanasyam Rallapalli, J. Skłenar +10 more
2018New Phytologist49 citations Open access
Semantic Scholar
Evidence for Large Complex Networks of Plant Short Silencing RNAs
D. MacLean, Nataliya E. Elina, Ericka R. Havecker, Susanne B. Heimstaedt +2 more
2010PLoS ONE46 citations Open access
Semantic Scholar
Using False Discovery Rates to Benchmark SNP-callers in next-generation sequencing projects
R. Farrer, D. Henk, D. MacLean, D. Studholme +1 more
2013Scientific Reports42 citations Open access
Semantic Scholar
Crowdsourcing genomic analyses of ash and ash dieback – power to the people
D. MacLean, Kentaroh Yoshida, A. Edwards, Lisa C. Crossman +10 more
2013GigaScience41 citations Open access
Semantic Scholar
High-Throughput Confocal Imaging of Intact Live Tissue Enables Quantification of Membrane Trafficking in Arabidopsis1[W]
S. Salomon, Dorit Grunewald, Kurt Stüber, Sebastian Schaaf +3 more
2010Plant Physiology40 citations Open access
Semantic Scholar
EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics
Ghanasyam Rallapalli, E. Kemen, Alexandre Robert-Seilaniantz, C. Segonzac +4 more
2014BMC Genomics37 citations Open access
Semantic Scholar
Reference-free SNP detection: dealing with the data deluge
R. Leggett, D. MacLean
2014BMC Genomics34 citations Open access
Semantic Scholar
DeepStomata: Facial Recognition Technology for Automated Stomatal Aperture Measurement
Yosuke Toda, S. Toh, G. Bourdais, S. Robatzek +2 more
2018bioRxiv33 citations Open access
Semantic Scholar
Chromatin accessibility landscapes activated by cell surface and intracellular immune receptors
Ping-Tao Ding, Toshiyuki Sakai, R. Shrestha, N. Pérez +9 more
2020bioRxiv32 citations Open access
Semantic Scholar
Changing the rules of the game
D. MacLean
2013eLife32 citations Open access
Semantic Scholar
Identifying and Classifying Trait Linked Polymorphisms in Non-Reference Species by Walking Coloured de Bruijn Graphs
R. Leggett, R. Ramirez-Gonzalez, Walter Verweij, C. Kawashima +4 more
2013PLoS ONE30 citations Open access
Semantic Scholar
GUN1 (GENOMES UNCOUPLED1) Encodes a Pentatricopeptide Repeat (PPR) Protein Involved in Plastid Protein Synthesis-Responsive Retrograde Signaling to the Nucleus
A. Cottage, Ellie K. Mott, Jun-Hui Wang, James A. Sullivan +7 more
200830 citations
Semantic Scholar
The use of quantitative imaging to investigate regulators of membrane trafficking in Arabidopsis stomatal closure
G. Bourdais, D. McLachlan, L. Rickett, Ji Zhou +7 more
2019Traffic : the International Journal of Intracellular Transport28 citations Open access
Semantic Scholar
Accurate plant pathogen effector protein classification ab initio with deepredeff: an ensemble of convolutional neural networks
Ruth Kristianingsih, D. MacLean
2020BMC Bioinformatics27 citations Open access
Semantic Scholar
Microarray analysis of chromatin-immunoprecipitated DNA identifies specific regions of tobacco genes associated with acetylated histones.
Y. Chua, Ellie K. Mott, Anthony P. Brown, D. MacLean +1 more
2004The Plant Journal26 citations
Semantic Scholar

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E. Kemen — researcher profile on SciRah