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Atsuko Yamaguchi · SciRah

Researcher profile · Semantic Scholar

Atsuko Yamaguchi

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Atsuko Yamaguchi — researcher profile on SciRah

h-index: 15
Works: 67
Citations: 672

Most-cited papers

KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains
Kiyoko F. Aoki, Atsuko Yamaguchi, Nobuhisa Ueda, T. Akutsu +3 more
2004Nucleic Acids Res.97 citations Open access
Semantic Scholar
Efficient tree-matching methods for accurate carbohydrate database queries.
Kiyoko F. Aoki, Atsuko Yamaguchi, Y. Okuno, T. Akutsu +3 more
2003Genome informatics. International Conference on Genome Informatics59 citations
Semantic Scholar
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains
Toshiaki Katayama, M. Wilkinson, K. Aoki-Kinoshita, Shuichi Kawashima +81 more
2014Journal of Biomedical Semantics58 citations Open access
Semantic Scholar
BioBenchmark Toyama 2012: an evaluation of the performance of triple stores on biological data
Hongyan Wu, Toyofumi Fujiwara, Yasunori Yamamoto, Jerven T. Bolleman +1 more
2014Journal of Biomedical Semantics39 citations Open access
Semantic Scholar
YummyData: providing high-quality open life science data
Yasunori Yamamoto, Atsuko Yamaguchi, A. Splendiani
2018Database J. Biol. Databases Curation37 citations Open access
Semantic Scholar
Allie: a database and a search service of abbreviations and long forms
Yasunori Yamamoto, Atsuko Yamaguchi, H. Bono, T. Takagi
2011Database J. Biol. Databases Curation34 citations Open access
Semantic Scholar
An Approximation Algorithm for the Two-Layered Graph Drawing Problem
Atsuko Yamaguchi, A. Sugimoto
1999International Computing and Combinatorics Conference33 citations
Semantic Scholar
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
Toshiaki Katayama, Mark D. Wilkinson, G. Micklem, Shuichi Kawashima +62 more
2013Journal of Biomedical Semantics31 citations Open access
Semantic Scholar
Finding the Maximum Common Subgraph of a Partial k-Tree and a Graph with a Polynomially Bounded Number of Spanning Trees
Atsuko Yamaguchi, Kiyoko F. Aoki, Hiroshi Mamitsuka
2003International Symposium on Algorithms and Computation28 citations
Semantic Scholar
The health care and life sciences community profile for dataset descriptions
M. Dumontier, A. Gray, M. S. Marshall, Vladimir Alexiev +26 more
2016PeerJ26 citations Open access
Semantic Scholar
Semantic Web technologies for the big data in life sciences.
Hongyan Wu, Atsuko Yamaguchi
2014BioScience Trends21 citations Open access
Semantic Scholar
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications
Toshiaki Katayama, Mark D. Wilkinson, Rutger A. Vos, T. Kawashima +53 more
2011Journal of Biomedical Semantics21 citations Open access
Semantic Scholar
An Intelligent SPARQL Query Builder for Exploration of Various Life-science Databases
Atsuko Yamaguchi, K. Kozaki, Kai Lenz, Hongyan Wu +1 more
2014IESD@ISWC19 citations
Semantic Scholar
Dataset Descriptions: HCLS Community Profile
A. Gray, J. Baran, M. S. Marshall, M. Dumontier +27 more
201518 citations
Semantic Scholar
Building Linked Open Data towards integration of biomedical scientific literature with DBpedia
Yasunori Yamamoto, Atsuko Yamaguchi, A. Yonezawa
2013Journal of Biomedical Semantics17 citations Open access
Semantic Scholar
Application of a new probabilistic model for recognizing complex patterns in glycans
Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, M. Kanehisa +2 more
2004ISMB/ECCB15 citations Open access
Semantic Scholar
Advances in the development of PubCaseFinder, including the new application programming interface and matching algorithm
Toyofumi Fujiwara, Jae-Moon Shin, Atsuko Yamaguchi
2021Human Mutation13 citations Open access
Semantic Scholar
Mining biologically active patterns in metabolic pathways using microarray expression profiles
Hiroshi Mamitsuka, Y. Okuno, Atsuko Yamaguchi
2003SKDD13 citations
Semantic Scholar
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*
Toshiaki Katayama, K. Arakawa, Mitsuteru Nakao, K. Ono +53 more
2010Journal of Biomedical Semantics10 citations Open access
Semantic Scholar
Malonyl-CoA:Anthocyanin 5- O -Glucoside-6 (cid:1) - O -Malonyltransferase from Scarlet Sage ( Salvia splendens ) Flowers ENZYME PURIFICATION, GENE CLONING, EXPRESSION, AND CHARACTERIZATION* □ S
Hirokazu Suzuki, T. Nakayama, K. Yonekura-Sakakibara, Y. Fukui +6 more
200110 citations
Semantic Scholar
Semantic Data Acquisition by Traversing Class-Class Relationships Over Linked Open Data
Atsuko Yamaguchi, K. Kozaki, Kai Lenz, Yasunori Yamamoto +2 more
2016Joint International Conference of Semantic Technology8 citations
Semantic Scholar
TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model
S. Kawano, Tsutomu Watanabe, Sohei Mizuguchi, N. Araki +2 more
2014Nucleic Acids Res.8 citations Open access
Semantic Scholar
Discriminative application of string similarity methods to chemical and non-chemical names for biomedical abbreviation clustering
Atsuko Yamaguchi, Yasunori Yamamoto, Jin-Dong Kim, T. Takagi +1 more
2011BMC Genomics8 citations Open access
Semantic Scholar
Efficiently Finding Paths Between Classes to Build a SPARQL Query for Life-Science Databases
Atsuko Yamaguchi, K. Kozaki, Kai Lenz, Hongyan Wu +2 more
2015Joint International Conference of Semantic Technology6 citations
Semantic Scholar
BioHackathon 2015: Semantics of data for life sciences and reproducible research
R. Vos, Toshiaki Katayama, H. Mishima, S. Kawano +73 more
2020F1000Research5 citations Open access
Semantic Scholar
A proof-of-concept study of extracting patient histories for rare/intractable diseases from social media
Atsuko Yamaguchi, N. Queralt-Rosinach
2020Genomics & Informatics4 citations Open access
Semantic Scholar
Managing and analyzing carbohydrate data
Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, T. Akutsu +2 more
2004SGMD4 citations
Semantic Scholar
Gene Ranking based on Paths from Phenotypes to Genes on Knowledge Graph
Atsuko Yamaguchi, Jae-Moon Shin, Toyofumi Fujiwara
2021IJCKG3 citations
Semantic Scholar
Data Acquisition by Traversing Class-Class Relationships over the Linked Open Data
Atsuko Yamaguchi, K. Kozaki, Kai Lenz, Yasunori Yamamoto +2 more
2016International Workshop on the Semantic Web3 citations
Semantic Scholar
Dynamic Join Order Optimization for SPARQL Endpoint Federation
Hongyan Wu, Atsuko Yamaguchi, Jin-Dong Kim
2015SSWS@ISWC3 citations
Semantic Scholar
Two-Layered Genetic Network Drawings with Minimum Edge Crossings
Atsuko Yamaguchi, H. Toh
20013 citations
Semantic Scholar
Visualization of Genetic Networks: Edge Crossing Minimization of a Graph Drawing with Vertex Pairs
Atsuko Yamaguchi, H. Toh
20003 citations
Semantic Scholar
An Approximation Algorithm for the Minimum Common Supertree Problem
Atsuko Yamaguchi, K. Nakano, S. Miyano
1997Nordic Journal of Computing3 citations
Semantic Scholar
O-JMeSH: creating a bilingual English-Japanese controlled vocabulary of MeSH UIDs through machine translation and mutual information
Felipe Soares, Yuka Tateisi, Terue Takatsuki, Atsuko Yamaguchi
2021Genomics & Informatics2 citations Open access
Semantic Scholar
Implementing LOD Surfer as a Search System for the Annotation of Multiple Protein Sequence Alignment
Atsuko Yamaguchi, H. Toh
2018Joint International Conference of Semantic Technology2 citations
Semantic Scholar
Semantic Graph Analysis for Federated LOD Surfing in Life Sciences
Atsuko Yamaguchi, K. Kozaki, Yasunori Yamamoto, H. Masuya +1 more
2017Joint International Conference of Semantic Technology2 citations
Semantic Scholar
Natural Language Query Processing for Life Science Knowledge - Position Paper
Jin-Dong Kim, Yasunori Yamamoto, Atsuko Yamaguchi, Mitsuteru Nakao +3 more
2010Active Media Technology2 citations
Semantic Scholar
Approximating Minimum Common Supertrees for Complete k-Ary Trees
Atsuko Yamaguchi, S. Miyano, 敦子山口, 悟宮野
19932 citations
Semantic Scholar
Ontology-based expansion of virtual gene panels to improve diagnostic efficiency for rare genetic diseases
Jae-Moon Shin, Toyofumi Fujiwara, H. Saitsu, Atsuko Yamaguchi
2024BMC Medical Informatics and Decision Making1 citations Open access
Semantic Scholar
Umaka-Yummy Data: A Place to Facilitate Communication between Data Providers and Consumers
Yasunori Yamamoto, Atsuko Yamaguchi, A. Splendiani
2016Workshop on Semantic Web Applications and Tools for Life Sciences1 citations
Semantic Scholar
SPARQL Builder: Constructing SPARQL Query by Traversing Class-Class Relationships for Life Science Databases
Atsuko Yamaguchi, K. Kozaki, Kai Lenz, Yasunori Yamamoto +2 more
2016Joint International Conference of Semantic Technology1 citations
Semantic Scholar
Building linked open data using approximate string matching methods and domain specific resources
Yasunori Yamamoto, Atsuko Yamaguchi, A. Yonezawa
2011Workshop on Semantic Web Applications and Tools for Life Sciences1 citations
Semantic Scholar
Statistical Significance of Tree Similarity Scores
Kiyoko F. Aoki, Atsuko Yamaguchi, Y. Okuno, T. Akutsu +3 more
20031 citations
Semantic Scholar
Enriching the MONDO Disease Ontology with PubMed-Derived Literature Knowledge
Teppei Okazaki, Toyofumi Fujiwara, Atsuko Yamaguchi
2026IIAI International Conference on Advanced Applied Informatics0 citations
Semantic Scholar
Extracting Long COVID Knowledge from LitCovid: A Glossary-Based Approach
Atsuko Yamaguchi, R. Takeda, Yuka Tataeisi
2024IIAI International Conference on Advanced Applied Informatics0 citations
Semantic Scholar
A Comparative Study on Storing and Retrieval of URIs for Life Sciences Databases
Atsuko Yamaguchi, Yasunori Yamamoto
2023IJCKG0 citations
Semantic Scholar
Constructing Japanese MeSH term dictionaries related to the COVID-19 literature
Atsuko Yamaguchi, Terue Takatsuki, Yuka Tateisi, Felipe Soares
2021Genomics & Informatics0 citations Open access
Semantic Scholar
Investigating Schema Definitions Using RDFS and OWL 2 for RDF Databases in Life Sciences
Atsuko Yamaguchi, Tatsuya Kushida, Yasunori Yamamoto, K. Kozaki
2019Joint International Conference of Semantic Technology0 citations
Semantic Scholar
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services
Toshiaki Katayama, Shuichi Kawashima, G. Micklem, S. Kawano +72 more
2019F1000Research0 citations Open access
Semantic Scholar
UmakaData Extension: Toward Realization of a Practical SPARQL Endpoint Discovery Service for Life Sciences
Norio Kobayashi, Yasunori Yamamoto, Atsuko Yamaguchi
2019SWAT4HCLS0 citations
Semantic Scholar

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