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Jochen Weile · SciRah

Researcher profile · Semantic Scholar

Jochen Weile

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Jochen Weile — researcher profile on SciRah

h-index: 21
Works: 58
Citations: 3,262

Most-cited papers

A reference map of the human binary protein interactome
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn +84 more
2020Nature1,071 citations Open access
Semantic Scholar
Widespread Macromolecular Interaction Perturbations in Human Genetic Disorders
N. Sahni, S. Yi, Mikko Taipale, J. F. Fuxman Bass +44 more
2015Cell575 citations Open access
Semantic Scholar
MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect
Daniel Esposito, Jochen Weile, J. Shendure, Lea M. Starita +4 more
2019Genome Biology230 citations Open access
Semantic Scholar
A framework for exhaustively mapping functional missense variants
Jochen Weile, Song Sun, Atina G. Coté, Jennifer J. Knapp +17 more
2017Molecular Systems Biology204 citations Open access
Semantic Scholar
Multiplexed assays of variant effects contribute to a growing genotype–phenotype atlas
Jochen Weile, Frederick P. Roth
2018Human Genetics135 citations Open access
Semantic Scholar
Improved pathogenicity prediction for rare human missense variants
Yingzhou Wu, Han-Qing Liu, Roujia Li, Song Sun +2 more
2021American Journal of Human Genetics93 citations Open access
Semantic Scholar
Molecular Systems Biology Peer Review Process File Pooled-matrix Protein Interaction Screens Using Barcode Fusion Genetics Transaction Report
Nozomu Yachie, E. Petsalaki, J. C. Mello, Jochen Weile +29 more
87 citations
Semantic Scholar
Improved pathogenicity prediction for rare human missense variants
Yingzhou Wu, Roujia Li, Song Sun, Jochen Weile +1 more
2021American Journal of Human Genetics76 citations Open access
Semantic Scholar
Integrative pathway dissection of molecular mechanisms of moxLDL-induced vascular smooth muscle phenotype transformation
G. Karagiannis, Jochen Weile, Gary D. Bader, J. Minta
2013BMC Cardiovascular Disorders70 citations Open access
Semantic Scholar
A proactive genotype-to-patient-phenotype map for cystathionine beta-synthase
Song Sun, Jochen Weile, Marta Verby, Yingzhou Wu +9 more
2018Genome Medicine62 citations Open access
Semantic Scholar
Shifting landscapes of human MTHFR missense-variant effects
Jochen Weile, Nishka Kishore, Song Sun, Ranim Maaieh +17 more
2021American Journal of Human Genetics61 citations Open access
Semantic Scholar
Systematic analysis of bypass suppression of essential genes
Jolanda van Leeuwen, Carles Pons, Guihong Tan, Zi-Yang Wang +15 more
2020Molecular Systems Biology58 citations Open access
Semantic Scholar
KeyPathwayMiner: Detecting Case-Specific Biological Pathways Using Expression Data
N. Alcaraz, Hande Küçük, Jochen Weile, A. Wipat +1 more
2011Internet Mathematics58 citations Open access
Semantic Scholar
A comprehensive map of human glucokinase variant activity
S. Gersing, M. Cagiada, Marinella Gebbia, A. Gjesing +11 more
2022bioRxiv48 citations Open access
Semantic Scholar
An integrated dataset for in silico drug discovery
S. Cockell, Jochen Weile, P. Lord, Claire Wipat +5 more
2010Journal of Integrative Bioinformatics44 citations Open access
Semantic Scholar
The functional landscape of coding variation in the familial hypercholesterolemia gene LDLR
Daniel R. Tabet, Atina G. Coté, M. Lancaster, Jochen Weile +30 more
2025Science38 citations Open access
Semantic Scholar
A reference map of the human protein interactome
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn +84 more
2019bioRxiv38 citations Open access
Semantic Scholar
Benchmarking computational variant effect predictors by their ability to infer human traits
Daniel R. Tabet, Da Kuang, M. Lancaster, Roujia Li +7 more
2024Genome Biology31 citations Open access
Semantic Scholar
MaveRegistry: a collaboration platform for multiplexed assays of variant effect
Da Kuang, Jochen Weile, Nishka Kishore, Maria H. T. Nguyen +4 more
2020bioRxiv25 citations Open access
Semantic Scholar
Systematically testing human HMBS missense variants to reveal mechanism and pathogenic variation
W. van Loggerenberg, S. Sowlati-Hashjin, Jochen Weile, Rayna Hamilton +21 more
2023American Journal of Human Genetics22 citations Open access
Semantic Scholar
Systematically testing human HMBS missense variants to reveal mechanism and pathogenic variation
W. van Loggerenberg, S. Sowlati-Hashjin, Jochen Weile, Rayna Hamilton +20 more
2023bioRxiv21 citations Open access
Semantic Scholar
Genome-scale mapping of DNA damage suppressors through phenotypic CRISPR/Cas9 screens
Yi-Chao Zhao, Daniel R. Tabet, Diana Rubio Contreras, Linjiang Lao +13 more
2023Molecules and Cells18 citations Open access
Semantic Scholar
A web application and service for imputing and visualizing missense variant effect maps
Yingzhou Wu, Jochen Weile, Atina G. Coté, Song Sun +3 more
2019Bioinform.17 citations Open access
Semantic Scholar
Mapping DNA damage-dependent genetic interactions in yeast via orgy mating and barcode fusion genetics
J. Díaz-Mejía, J. Mellor, Atina G. Coté, Attila Balint +16 more
2017bioRxiv15 citations Open access
Semantic Scholar
Assessing predictions of fitness effects of missense mutations in SUMO-conjugating enzyme UBE2I
Jing Zhang, Lisa N. Kinch, Qian Cong, Jochen Weile +4 more
2017Human Mutation15 citations Open access
Semantic Scholar
A missense variant effect map for the human tumor-suppressor protein CHK2
Marinella Gebbia, Daniel Zimmerman, Rosanna Jiang, Maria H. T. Nguyen +15 more
2024American Journal of Human Genetics14 citations Open access
Semantic Scholar
Bayesian integration of networks without gold standards
Jochen Weile, Katherine James, J. Hallinan, S. Cockell +3 more
2012Bioinform.14 citations Open access
Semantic Scholar
Customizable views on semantically integrated networks for systems biology
Jochen Weile, Matthew R. Pocock, S. Cockell, P. Lord +6 more
2011Bioinform.13 citations Open access
Semantic Scholar
Assessing predictions on fitness effects of missense variants in calmodulin
Jing Zhang, Lisa N. Kinch, Qian Cong, Panagiotis Katsonis +13 more
2019Human Mutation12 citations Open access
Semantic Scholar
CoryneCenter – An online resource for the integrated analysis of corynebacterial genome and transcriptome data
H. Neuweger, J. Baumbach, S. Albaum, T. Bekel +8 more
2007BMC Systems Biology12 citations Open access
Semantic Scholar
Pacybara: accurate long-read sequencing for barcoded mutagenized allelic libraries
Jochen Weile, Gabrielle Ferra, Gabriel E. Boyle, Sriram Pendyala +10 more
2023bioRxiv11 citations Open access
Semantic Scholar
Mapping DNA damage‐dependent genetic interactions in yeast via party mating and barcode fusion genetics
J. Díaz-Mejía, Albi Celaj, J. Mellor, Atina G. Coté +17 more
2018Molecular Systems Biology11 citations Open access
Semantic Scholar
Proactive Variant Effect Mapping Aids Diagnosis in Pediatric Cardiac Arrest
Brendan J Floyd, Jochen Weile, P. Kannankeril, A. Glazer +6 more
2023Circulation Genomic and Precision Medicine9 citations Open access
Semantic Scholar
MoRAine - A web server for fast computational transcription factor binding motif re-annotation
J. Baumbach, T. Wittkop, Jochen Weile, T. Kohl +1 more
2008Journal of Integrative Bioinformatics9 citations Open access
Semantic Scholar
Creating an atlas of variant effects to resolve variants of uncertain significance and guide cardiovascular medicine
Andrew M. Glazer, Daniel R. Tabet, V. Parikh, B. Kroncke +12 more
2025Nature Reviews Cardiology8 citations
Semantic Scholar
Multiplexed Assays of Variant Effect and Automated Patch-clamping Improve KCNH2-LQTS Variant Classification and Cardiac Event Risk Stratification
M. O’Neill, Chai-Ann Ng, Takanori Aizawa, L. Sala +38 more
2024Circulation8 citations Open access
Semantic Scholar
Prioritizing genes for systematic variant effect mapping
Da Kuang, R. Truty, Jochen Weile, Britt A. Johnson +4 more
2020Bioinform.8 citations Open access
Semantic Scholar
MaveQuest: a web resource for planning experimental tests of human variant effects
Da Kuang, Jochen Weile, Roujia Li, T. Ouellette +2 more
2020Bioinform.7 citations Open access
Semantic Scholar
A systematic genotype-phenotype map for missense variants in the human intellectual disability-associated gene GDI1
Rachel A. Silverstein, Song Sun, Marta Verby, Jochen Weile +5 more
2021bioRxiv6 citations Open access
Semantic Scholar
Expanding the Atlas of Functional Missense Variation for Human Genes
Jochen Weile, Song Sun, Atina G. Coté, Jennifer J. Knapp +17 more
2017bioRxiv6 citations Open access
Semantic Scholar
Linking Life Sciences Data Using Graph-Based Mapping
Jan Taubert, M. Hindle, A. Lysenko, Jochen Weile +2 more
2009Data Integration in the Life Sciences6 citations Open access
Semantic Scholar
Landscapes of missense variant impact for human superoxide dismutase 1
Anna Axakova, Megan X. Ding, Atina G. Coté, Radha Subramaniam +14 more
2025bioRxiv4 citations Open access
Semantic Scholar
A missense variant effect map for the human tumour suppressor protein CHK2
Marinella Gebbia, Daniel Zimmerman, Rosanna Jiang, Maria H. T. Nguyen +13 more
2024bioRxiv2 citations Open access
Semantic Scholar
Proactive variant effect mapping to accelerate genetic diagnosis for pediatric cardiac arrest
Brendan J Floyd, Jochen Weile, P. Kannankeril, A. Glazer +6 more
20222 citations
Semantic Scholar
Empowering rare variant burden-based gene-trait association studies via optimized computational predictor choice
Da Kuang, Roujia Li, Yingzhou Wu, Jochen Weile +2 more
2021bioRxiv2 citations Open access
Semantic Scholar
Assessing computational variant effect predictors via a prospective human
Da Kuang, Roujia Li, Yingzhou Wu, Jochen Weile +2 more
20211 citations
Semantic Scholar
The ONDEX data integration framework
Jochen Weile
20071 citations
Semantic Scholar
Systematic and proactive evaluation of AIRE missense variant effects
Anna Axakova, A. Berger, W. van Loggerenberg, Nishka Kishore +9 more
2026American Journal of Human Genetics0 citations Open access
Semantic Scholar
Using GPT-4 to Automate the Generation of Lay Summaries for Cancer Publications
Emma Purdie, Tony Yu, Jochen Weile, Diana Lemaire +1 more
2025bioRxiv0 citations Open access
Semantic Scholar
Systematic and proactive evaluation of AIRE missense variant effects
Anna Axakova, A. Berger, W. van Loggerenberg, Nishka Kishore +9 more
2025bioRxiv0 citations
Semantic Scholar

Frequent co-authors

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Frederick P. Roth×29
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Frederick P. Roth — researcher profile on SciRah
Atina G. Coté×19
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Atina G. Coté — researcher profile on SciRah
Roujia Li×13
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Nishka Kishore×12
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Song Sun — researcher profile on SciRah

Yingzhou Wu×11

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Marinella Gebbia×10

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Marta Verby×10

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Daniel R. Tabet×8

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J. Mellor — researcher profile on SciRah

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