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M. Cáccamo · SciRah

Researcher profile · Semantic Scholar

M. Cáccamo

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M. Cáccamo — researcher profile on SciRah

h-index: 44
Works: 110
Citations: 21K

Most-cited papers

The zebrafish reference genome sequence and its relationship to the human genome
K. Howe, Matthew D. Clark, C. Torroja, J. Torrance +173 more
2013Nature4,867 citations Open access
Semantic Scholar
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
K. Mayer, J. Rogers, J. El, Curtis J. Pozniak +92 more
2014Science1,600 citations Open access
Semantic Scholar
Analyses of pig genomes provide insight into porcine demography and evolution
M. Groenen, A. Archibald, H. Uenishi, C. Tuggle +132 more
2012Nature1,365 citations Open access
Semantic Scholar
A chromosome conformation capture ordered sequence of the barley genome
M. Mascher, H. Gundlach, A. Himmelbach, S. Beier +72 more
2017Nature1,283 citations Open access
Semantic Scholar
Control of Treg and TH17 cell differentiation by the aryl hydrocarbon receptor
F. Quintana, Alexandre S. Basso, Antonio H. Iglesias, T. Korn +5 more
2008Nature1,263 citations
Semantic Scholar
De novo assembly and genotyping of variants using colored de Bruijn graphs
Z. Iqbal, M. Cáccamo, I. Turner, P. Flicek +1 more
2012Nature Genetics689 citations Open access
Semantic Scholar
Assemblathon 1: a competitive assessment of de novo short read assembly methods.
D. Earl, K. Bradnam, J. S. St John, A. Darling +67 more
2011Genome Research548 citations Open access
Semantic Scholar
Ensembl 2007
T. Hubbard, B. Aken, K. Beal, B. Ballester +53 more
2006Nucleic Acids Res.529 citations Open access
Semantic Scholar
Conservation and divergence of gene families encoding components of innate immune response systems in zebrafish
Cornelia Stein, M. Cáccamo, G. Laird, M. Leptin
2007Genome Biology421 citations Open access
Semantic Scholar
Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates.
H. Kikuta, Mary A. Laplante, P. Navrátilová, Anna Z. Komisarczuk +18 more
2007Genome Research375 citations Open access
Semantic Scholar
gEVAL — a web-based browser for evaluating genome assemblies
W. Chow, K. Brugger, M. Cáccamo, I. Sealy +2 more
2016bioRxiv365 citations Open access
Semantic Scholar
Ensembl 2008
P. Flicek, B. Aken, K. Beal, B. Ballester +55 more
2007Nucleic Acids Res.352 citations Open access
Semantic Scholar
The European Genome-phenome Archive of human data consented for biomedical research
I. Lappalainen, J. Almeida-King, V. Kumanduri, Alexander Senf +22 more
2015Nature Genetics343 citations Open access
Semantic Scholar
Reap the crop wild relatives for breeding future crops.
A. Bohra, B. Kilian, S. Sivasankar, M. Cáccamo +3 more
2021Trends in Biotechnology290 citations Open access
Semantic Scholar
Ensembl 2006
E. Birney, D. Andrews, M. Cáccamo, Y. Chen +47 more
2005Nucleic Acids Res.248 citations Open access
Semantic Scholar
PolyMarker: A fast polyploid primer design pipeline
R. Ramirez-Gonzalez, C. Uauy, M. Cáccamo
2015Bioinform.212 citations Open access
Semantic Scholar
RNA-Seq bulked segregant analysis enables the identification of high-resolution genetic markers for breeding in hexaploid wheat.
R. Ramirez-Gonzalez, V. Segovia, N. Bird, P. Fenwick +5 more
2015Plant Biotechnology Journal205 citations Open access
Semantic Scholar
NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries
R. Leggett, B. Clavijo, L. Clissold, Matthew D. Clark +1 more
2013Bioinform.205 citations Open access
Semantic Scholar
Genome sequence and genetic diversity of European ash trees
Elizabeth S. A. Sollars, Andrea L. Harper, L. J. Kelly, C. Sambles +26 more
2016Nature199 citations Open access
Semantic Scholar
Diversity analysis of 80,000 wheat accessions reveals consequences and opportunities of selection footprints
C. Sansaloni, J. Franco, B. Santos, L. Percival-Alwyn +25 more
2020Nature Communications194 citations Open access
Semantic Scholar
A synteny-based draft genome sequence of the forage grass Lolium perenne.
S. Byrne, I. Nagy, M. Pfeifer, I. Armstead +11 more
2015The Plant Journal186 citations
Semantic Scholar
Genetic architecture and evolution of the S locus supergene in Primula vulgaris
Jin-Hong Li, Jonathan M. Cocker, Jonathan Wright, M. Webster +6 more
2016Nature Plants165 citations Open access
Semantic Scholar
Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement
J. D. de Vega, S. Ayling, M. Hegarty, D. Kudrna +18 more
2015Scientific Reports149 citations Open access
Semantic Scholar
Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.
S. Beier, A. Himmelbach, Christian Colmsee, Xiao-Qi Zhang +56 more
2017Scientific Data147 citations Open access
Semantic Scholar
Metagenomic study of the viruses of African straw-coloured fruit bats: Detection of a chiropteran poxvirus and isolation of a novel adenovirus
K. Baker, R. Leggett, N. Bexfield, M. Alston +13 more
2013Virology139 citations Open access
Semantic Scholar
Tissue-Specific Whole Transcriptome Sequencing in Castor, Directed at Understanding Triacylglycerol Lipid Biosynthetic Pathways
Adrian P. Brown, J. Kroon, D. Swarbreck, M. Febrer +4 more
2012PLoS ONE127 citations Open access
Semantic Scholar
Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom
S. Basu, Shrikant M. Patil, D. Mapleson, M. Russo +9 more
2017New Phytologist110 citations Open access
Semantic Scholar
Evolution of an Eurasian Avian-like Influenza Virus in Naïve and Vaccinated Pigs
P. Murcia, J. Hughes, P. Battista, Lucy E. Lloyd +11 more
2012PLoS Pathogens91 citations Open access
Semantic Scholar
Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments
R. Ramirez-Gonzalez, R. Bonnal, M. Cáccamo, D. MacLean
2012Source Code for Biology and Medicine91 citations Open access
Semantic Scholar
Adaptive Autoimmunity and Foxp3-Based Immunoregulation in Zebrafish
F. Quintana, Antonio H. Iglesias, M. Farez, M. Cáccamo +4 more
2010PLoS ONE87 citations Open access
Semantic Scholar
Primula vulgaris (primrose) genome assembly, annotation and gene expression, with comparative genomics on the heterostyly supergene
Jonathan M. Cocker, Jonathan Wright, Jin-Hong Li, D. Swarbreck +3 more
2018Scientific Reports80 citations Open access
Semantic Scholar
Updated guidelines for gene nomenclature in wheat
S. Boden, R. McIntosh, C. Uauy, S. Krattinger +24 more
2023Theoretical and Applied Genetics75 citations Open access
Semantic Scholar
A Viral Discovery Methodology for Clinical Biopsy Samples Utilising Massively Parallel Next Generation Sequencing
Gordon M. Daly, N. Bexfield, J. Heaney, Samuel C. B. Stubbs +9 more
2011PLoS ONE74 citations Open access
Semantic Scholar
NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles
R. Leggett, D. Heavens, M. Cáccamo, Matthew D. Clark +1 more
2015Bioinform.70 citations Open access
Semantic Scholar
Fruit Development in Sweet Cherry
Edoardo Vignati, Marzena Lipska, J. Dunwell, M. Cáccamo +1 more
2022Plants67 citations Open access
Semantic Scholar
A family of diatom-like silicon transporters in the siliceous loricate choanoflagellates
Alan O. Marron, M. Alston, D. Heavens, M. Akam +3 more
2013Proceedings of the Royal Society of London. Biological Sciences55 citations Open access
Semantic Scholar
Lessons learned from the initial sequencing of the pig genome: comparative analysis of an 8 Mb region of pig chromosome 17
E. Hart, M. Cáccamo, J. Harrow, S. Humphray +5 more
2007Genome Biology51 citations Open access
Semantic Scholar
CerealsDB 3.0: expansion of resources and data integration
Paul A. Wilkinson, M. Winfield, Gary L. A. Barker, Simon M. Tyrrell +8 more
2016BMC Bioinformatics50 citations Open access
Semantic Scholar
Data management challenges for artificial intelligence in plant and agricultural research
H. F. Williamson, Julia Brettschneider, M. Cáccamo, R. Davey +10 more
2021F1000Research49 citations Open access
Semantic Scholar
A high-quality genome of Eragrostis curvula grass provides insights into Poaceae evolution and supports new strategies to enhance forage quality
J. Carballo, B. Santos, D. Zappacosta, I. Garbus +6 more
2019Scientific Reports42 citations Open access
Semantic Scholar
Host Subtraction, Filtering and Assembly Validations for Novel Viral Discovery Using Next Generation Sequencing Data
Gordon M. Daly, R. Leggett, W. Rowe, Samuel C. B. Stubbs +5 more
2015PLoS ONE42 citations Open access
Semantic Scholar
Crowdsourcing genomic analyses of ash and ash dieback – power to the people
D. MacLean, Kentaroh Yoshida, A. Edwards, Lisa C. Crossman +10 more
2013GigaScience41 citations Open access
Semantic Scholar
Corrigendum: The zebrafish reference genome sequence and its relationship to the human genome
K. Howe, Matthew D. Clark, C. Torroja, J. Torrance +172 more
2013Nature40 citations Open access
Semantic Scholar
Draft Genome Sequence of Streptomyces Strain S4, a Symbiont of the Leaf-Cutting Ant Acromyrmex octospinosus
R. Seipke, Lisa C. Crossman, N. Drou, D. Heavens +3 more
2011Journal of Bacteriology35 citations Open access
Semantic Scholar
Identifying and Classifying Trait Linked Polymorphisms in Non-Reference Species by Walking Coloured de Bruijn Graphs
R. Leggett, R. Ramirez-Gonzalez, Walter Verweij, C. Kawashima +4 more
2013PLoS ONE30 citations Open access
Semantic Scholar
Complete Genome Sequence of the Proteolytic Clostridium botulinum Type A5 (B3′) Strain H04402 065
A. T. Carter, B. Pearson, Lisa C. Crossman, N. Drou +6 more
2011Journal of Bacteriology29 citations Open access
Semantic Scholar
Genome Sequence of the Vertebrate Gut Symbiont Lactobacillus reuteri ATCC 53608
D. Heavens, L. Tailford, Lisa C. Crossman, Faye Jeffers +3 more
2011Journal of Bacteriology28 citations Open access
Semantic Scholar
Advances in bacterial transcriptome and transposon insertion-site profiling using second-generation sequencing.
M. Febrer, K. Mclay, M. Cáccamo, K. Twomey +1 more
2011Trends in Biotechnology27 citations
Semantic Scholar
PyroClean: Denoising Pyrosequences from Protein-Coding Amplicons for the Recovery of Interspecific and Intraspecific Genetic Variation
R. Ramirez-Gonzalez, Douglas W. Yu, C. Bruce, D. Heavens +2 more
2013PLoS ONE26 citations Open access
Semantic Scholar
Characterization of repetitive DNA landscape in wheat homeologous group 4 chromosomes
I. Garbus, J. Romero, M. Valárik, Hana Vanžurová +6 more
2015BMC Genomics22 citations Open access
Semantic Scholar

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