B. Aken

Most-cited papers

GENCODE: The reference human genome annotation for The ENCODE Project
J. Harrow, A. Frankish, J. Gonzalez, Electra Tapanari +37 more
2012Genome Research4,522 citations Open access
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GENCODE reference annotation for the human and mouse genomes
A. Frankish, M. Diekhans, Anne-Maud Ferreira, Rory Johnson +51 more
2018Nucleic Acids Res.2,830 citations Open access
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Ensembl 2018
D. Zerbino, P. Achuthan, W. Akanni, M. Amode +53 more
2017Nucleic Acids Res.2,488 citations Open access
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Analyses of pig genomes provide insight into porcine demography and evolution
M. Groenen, A. Archibald, H. Uenishi, C. Tuggle +132 more
2012Nature1,365 citations Open access
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The Ensembl gene annotation system
B. Aken, S. Ayling, D. Barrell, L. Clarke +20 more
2016Database J. Biol. Databases Curation1,139 citations Open access
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Ensembl 2016
Andrew D. Yates, W. Akanni, M. Amode, D. Barrell +43 more
2015Nucleic Acids Res.1,138 citations Open access
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The genomic substrate for adaptive radiation in African cichlid fish
D. Brawand, C. Wagner, Yang I. Li, M. Malinsky +71 more
2014Nature943 citations Open access
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Ensembl 2014
P. Flicek, M. Amode, D. Barrell, K. Beal +48 more
2013Nucleic Acids Res.908 citations Open access
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Ensembl 2015
F. Cunningham, M. Amode, D. Barrell, K. Beal +45 more
2014Nucleic Acids Res.826 citations Open access
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Ensembl 2019
F. Cunningham, P. Achuthan, W. Akanni, James E. Allen +64 more
2018Nucleic Acids Res.810 citations Open access
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The genome sequence of Atlantic cod reveals a unique immune system
Bastiaan Star, A. Nederbragt, S. Jentoft, U. Grimholt +38 more
2011Nature777 citations Open access
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Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
T. Mikkelsen, M. Wakefield, B. Aken, C. Amemiya +58 more
2007Nature753 citations Open access
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Ensembl 2013
P. Flicek, Ikhlak Ahmed, M. Amode, D. Barrell +51 more
2012Nucleic Acids Res.688 citations Open access
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Whole-genome mutational landscape and characterization of noncoding and structural mutations in liver cancer
I. Braasch, Andrew R. Gehrke, J. Smith, K. Kawasaki +57 more
2016Nature Genetics653 citations Open access
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Ensembl 2012
P. Flicek, M. Amode, D. Barrell, K. Beal +53 more
2011Nucleic Acids Res.651 citations Open access
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Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution
J. Smith, S. Kuraku, C. Holt, T. Sauka-Spengler +55 more
2013Nature Genetics642 citations Open access
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The spotted gar genome illuminates vertebrate evolution and facilitates human-to-teleost comparisons
I. Braasch, Andrew R. Gehrke, J. Smith, K. Kawasaki +57 more
2016Nature Genetics584 citations Open access
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The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes.
K. Pruitt, J. Harrow, R. Harte, Craig Wallin +45 more
2009Genome Research584 citations Open access
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Analysis of the African coelacanth genome sheds light on tetrapod evolution
Chris T. Amemiya, J. Alföldi, Alison P. Lee, Shao-Hua Fan +87 more
2013Nature570 citations Open access
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Ensembl 2009
T. Hubbard, B. Aken, S. Ayling, B. Ballester +54 more
2008Nucleic Acids Res.549 citations Open access
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Ensembl 2007
T. Hubbard, B. Aken, K. Beal, B. Ballester +53 more
2006Nucleic Acids Res.529 citations Open access
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Ensembl 2017
B. Aken, P. Achuthan, W. Akanni, M. Amode +46 more
2016Nucleic Acids Res.489 citations Open access
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Ensembl 2011
P. Flicek, M. Amode, D. Barrell, K. Beal +48 more
2010Nucleic Acids Res.482 citations Open access
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The Sheep Genome Illuminates Biology of the Rumen and Lipid Metabolism
Yu Jiang, Min Xie, Wenbin Chen, R. Talbot +69 more
2014Science460 citations Open access
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The draft genomes of soft–shell turtle and green sea turtle yield insights into the development and evolution of the turtle–specific body plan
Zhuo Wang, Juan Pascual-Anaya, A. Zadissa, Wen-Qi Li +30 more
2013Nature Genetics435 citations Open access
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Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication
M. Carneiro, C. Rubin, F. Di Palma, F. Albert +36 more
2014Science376 citations Open access
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Ensembl 2008
P. Flicek, B. Aken, K. Beal, B. Ballester +55 more
2007Nucleic Acids Res.352 citations Open access
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Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer
E. Murchison, O. Schulz-Trieglaff, Zemin Ning, L. Alexandrov +52 more
2012Cell324 citations Open access
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Ensembl’s 10th year
P. Flicek, B. Aken, B. Ballester, K. Beal +53 more
2009Nucleic Acids Res.320 citations Open access
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Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication
M. Montague, Gang Li, B. Gandolfi, R. Khan +21 more
2014Proceedings of the National Academy of Sciences of the United States of America307 citations Open access
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The cavefish genome reveals candidate genes for eye loss
S. McGaugh, Joshua B. Gross, B. Aken, Maryline Blin +17 more
2014Nature Communications267 citations Open access
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A comprehensive genomic history of extinct and living elephants
E. Palkopoulou, Mark Lipson, S. Mallick, Svend V. Nielsen +33 more
2018Proceedings of the National Academy of Sciences of the United States of America180 citations Open access
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Edinburgh Research Explorer An improved pig reference genome sequence to enable pig genetics and genomics research
A. Warr, N. Affara, B. Aken, H. Beiki +37 more
171 citations
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Current status and new features of the Consensus Coding Sequence database
C. Farrell, N. O'Leary, R. Harte, J. Loveland +39 more
2013Nucleic Acids Res.160 citations Open access
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Digital Commons@Becker
D. Church, Valerie A. Schneider, K. Steinberg, M. Schatz +12 more
154 citations
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The comparative genomics and complex population history of Papio baboons
J. Rogers, M. Raveendran, R. Harris, T. Mailund +38 more
2019Science Advances150 citations Open access
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MIT Open Access Articles GENCODE: The reference human genome annotation for The ENCODE Project
Genome Research, J. Harrow, A. Frankish, J. M. González +38 more
144 citations
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Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly
W. Warren, Raquel García-Pérez, Sen Xu, K. Lampert +24 more
2018Nature Ecology & Evolution140 citations Open access
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The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease
Xin-Xia Peng, J. Alföldi, Kevin Gori, A. Eisfeld +34 more
2014Nature Biotechnology134 citations Open access
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Consensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curation
S. Pujar, N. O'Leary, C. Farrell, J. Loveland +33 more
2017Nucleic Acids Res.129 citations Open access
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The genome of the vervet (Chlorocebus aethiops sabaeus)
W. Warren, A. Jasinska, Raquel García-Pérez, H. Svardal +54 more
2015Genome Research126 citations Open access
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Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes
David Thybert, M. Roller, Fábio C. P. Navarro, Ian T. Fiddes +42 more
2017bioRxiv105 citations Open access
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Gibbon genome and the fast karyotype evolution of small apes
L. Carbone, R. A. Harris, S. Gnerre, K. Veeramah +89 more
2014Nature98 citations Open access
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The Avian RNAseq Consortium: a community effort to annotate the chicken genome
Michael Schmid, Jacqueline Smith, D. Burt, B. Aken +100 more
2015Cytogenetic and Genome Research88 citations Open access
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Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome
C. Howald, A. Tanzer, J. Chrast, F. Kokocinski +13 more
2012Genome Research68 citations Open access
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Divergence in gene expression within and between two closely related flycatcher species
Severin Uebbing, A. Künstner, H. Mäkinen, N. Backström +10 more
2016Molecular Ecology67 citations Open access
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Tracking and coordinating an international curation effort for the CCDS Project
R. Harte, C. Farrell, J. Loveland, M. Suner +9 more
2012Database J. Biol. Databases Curation61 citations Open access
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Genetic variation and gene expression across multiple tissues and developmental stages in a non-human primate
A. Jasinska, Ivette M. Zelaya, S. Service, Christine B. Peterson +31 more
2016Nature Genetics56 citations Open access
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An improved pig reference genome sequence to enable pig genetics and genomics research
A. Warr, N. Affara, B. Aken, H. Beiki +36 more
2019bioRxiv36 citations Open access
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Avianbase: a community resource for bird genomics
L. Eory, M. T. P. Gilbert, Cai Li, Bo Li +6 more
2015Genome Biology36 citations Open access
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