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R. Sinkovits · SciRah

Researcher profile · Semantic Scholar

R. Sinkovits

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R. Sinkovits — researcher profile on SciRah

h-index: 23
Works: 89
Citations: 2,465

Most-cited papers

High frequency of shared clonotypes in human B cell receptor repertoires
Cinque S. Soto, Robin Bombardi, Andre Branchizio, Nurgun Kose +6 more
2019Nature293 citations Open access
Semantic Scholar
AUTO3DEM--an automated and high throughput program for image reconstruction of icosahedral particles.
Xiao-Dong Yan, R. Sinkovits, T. S. Baker
2007Journal of Structural Biology205 citations Open access
Semantic Scholar
Structural Insight into the Unique Properties of Adeno-Associated Virus Serotype 9
M. DiMattia, H. Nam, K. van Vliet, M. Mitchell +12 more
2012Journal of Virology198 citations Open access
Semantic Scholar
Controlling and Switching the Morphology of Micellar Nanoparticles with Enzymes
T. Ku, Miao-Ping Chien, M. Thompson, R. Sinkovits +3 more
2011Journal of the American Chemical Society163 citations Open access
Semantic Scholar
Overview of the Alliance for Cellular Signaling
A. Gilman, M. Simon, H. R. Bourne, B. A. Harris +73 more
2002Nature128 citations Open access
Semantic Scholar
Capsid Antibodies to Different Adeno-Associated Virus Serotypes Bind Common Regions
B. Gurda, M. DiMattia, Edward B. Miller, A. Bennett +14 more
2013Journal of Virology122 citations Open access
Semantic Scholar
Network Cosmology
Dmitri V. Krioukov, M. Kitsak, R. Sinkovits, D. Rideout +2 more
2012Scientific Reports112 citations Open access
Semantic Scholar
Nonlinear Dynamics in Granular Columns.
R. Sinkovits, Surajit Sen
1995Physical Review Letters97 citations
Semantic Scholar
Human Bocavirus Capsid Structure: Insights into the Structural Repertoire of the Parvoviridae
B. Gurda, Kristin N. Parent, Heather Bladek, R. Sinkovits +8 more
2010Journal of Virology90 citations Open access
Semantic Scholar
Atomic structure reveals the unique capsid organization of a dsRNA virus
Junhua Pan, Liping Dong, Li Lin, W. Ochoa +6 more
2009Proceedings of the National Academy of Sciences of the United States of America86 citations Open access
Semantic Scholar
Computations of High-Speed, High Knudsen Number Microchannel Flows
C. Oh, E. Oran, R. Sinkovits
199783 citations
Semantic Scholar
Infectious myonecrosis virus has a totivirus-like, 120-subunit capsid, but with fiber complexes at the fivefold axes
Jinghua Tang, W. Ochoa, R. Sinkovits, B. Poulos +4 more
2008Proceedings of the National Academy of Sciences of the United States of America77 citations Open access
Semantic Scholar
Partitivirus structure reveals a 120-subunit, helix-rich capsid with distinctive surface arches formed by quasisymmetric coat-protein dimers.
W. Ochoa, W. M. Havens, R. Sinkovits, M. Nibert +2 more
2008Structure66 citations Open access
Semantic Scholar
Interaction of αVβ3 and αVβ6 Integrins with Human Parechovirus 1
J. Seitsonen, P. Susi, O. Heikkilä, R. Sinkovits +3 more
2010Journal of Virology56 citations Open access
Semantic Scholar
High Frequency of Shared Clonotypes in Human T Cell Receptor Repertoires
Cinque S. Soto, Robin Bombardi, M. Kozhevnikov, R. Sinkovits +8 more
2020Cell Reports53 citations Open access
Semantic Scholar
Structural Analysis of Coxsackievirus A7 Reveals Conformational Changes Associated with Uncoating
J. Seitsonen, S. Shakeel, P. Susi, A. Pandurangan +7 more
2012Journal of Virology51 citations Open access
Semantic Scholar
Expanse: Computing without Boundaries: Architecture, Deployment, and Early Operations Experiences of a Supercomputer Designed for the Rapid Evolution in Science and Engineering
Shawn M. Strande, Hai-Song Cai, M. Tatineni, W. Pfeiffer +14 more
2021Practice and Experience in Advanced Research Computing47 citations Open access
Semantic Scholar
Components of the antigen processing and presentation pathway revealed by gene expression microarray analysis following B cell antigen receptor (BCR) stimulation
Jamie A. Lee, R. Sinkovits, D. Mock, E. Rab +7 more
2006BMC Bioinformatics47 citations Open access
Semantic Scholar
Computer modeling of the optical properties of substitutional chromium impurities in halide elpasolites
A. M. Woods, R. Sinkovits, J. Charpie, Wenli Huang +2 more
199343 citations
Semantic Scholar
Gateways to Discovery: Cyberinfrastructure for the Long Tail of Science
R. Moore, Chaitan Baru, Diane A. Baxter, Geoffrey Fox +9 more
2014Extreme Science and Engineering Discovery Environment41 citations
Semantic Scholar
Cryo-reconstructions of P22 polyheads suggest that phage assembly is nucleated by trimeric interactions among coat proteins
Kristin N. Parent, R. Sinkovits, Margaret M. Suhanovsky, C. Teschke +2 more
2010Physical Biology35 citations Open access
Semantic Scholar
PyIR: a scalable wrapper for processing billions of immunoglobulin and T cell receptor sequences using IgBLAST
Cinque S. Soto, J. Finn, Jordan R. Willis, Samuel B. Day +6 more
2020BMC Bioinformatics32 citations Open access
Semantic Scholar
Gordon: design, performance, and experiences deploying and supporting a data intensive supercomputer
Shawn M. Strande, Pietro Cicotti, R. Sinkovits, William S. Young +5 more
2012Extreme Science and Engineering Discovery Environment31 citations
Semantic Scholar
Nonlinear acoustics in granular assemblies
S. Sen, M. Manciu, R. Sinkovits, A. Hurd
200121 citations
Semantic Scholar
Computer modeling of lattice dynamics in halide elpasolites
R. Sinkovits, R. Bartram
199121 citations
Semantic Scholar
Deploying Jupyter Notebooks at scale on XSEDE resources for Science Gateways and workshops
A. Zonca, R. Sinkovits
2018Practice and Experience in Advanced Research Computing19 citations Open access
Semantic Scholar
The interaction of shocks and defects in Lennard-Jones crystals
L. Phillips, R. Sinkovits, E. Oran, J. Boris
199318 citations Open access
Semantic Scholar
Fast determination of structurally cohesive subgroups in large networks
R. Sinkovits, James Moody, Bahattin Tolga Öztan, D. White
2016Journal of Computer Science16 citations Open access
Semantic Scholar
A tale of two symmetrons: rules for construction of icosahedral capsids from trisymmetrons and pentasymmetrons
R. Sinkovits, T. S. Baker
2009Journal of Structural Biology16 citations Open access
Semantic Scholar
Parallelization of direct simulation Monte Carlo method combined with monotonic Lagrangian grid
C. Oh, R. Sinkovits, B. Z. Cybyk, E. Oran +1 more
199616 citations
Semantic Scholar
Scaling relations for the slippery ballistic growth model
R. Sinkovits
199414 citations
Semantic Scholar
Use of accounting concepts to study research: return on investment in XSEDE, a US cyberinfrastructure service
C. Stewart, Claudia M. Costa, Julie A. Wernert, Winona Snapp-Childs +15 more
2023Scientometrics13 citations Open access
Semantic Scholar
A Technique for Regularizing the Structure of a Monotonic Lagrangian Grid
R. Sinkovits, J. Boris, E. Oran
199313 citations
Semantic Scholar
PD-1 and CD73 on naive CD4+ T cells synergistically limit responses to self
F. Nettersheim, S. Brunel, R. Sinkovits, S. S. Armstrong +11 more
2024Nature Immunology12 citations
Semantic Scholar
A new time-dependent, three-dimensional flame model for laminar flames
G. Patnaik, K. Kailasanath, R. Sinkovits
199610 citations
Semantic Scholar
Comet: Tales from the Long Tail: Two Years In and 10,000 Users Later
Shawn M. Strande, Hai-Song Cai, Trevor Cooper, K. Flammer +13 more
2017Practice and Experience in Advanced Research Computing9 citations
Semantic Scholar
Data intensive analysis on the gordon high performance data and compute system
R. Sinkovits, Pietro Cicotti, Shawn M. Strande, M. Tatineni +3 more
2011Knowledge Discovery and Data Mining9 citations
Semantic Scholar
Fast construction of nanosecond level snapshots of financial markets
Jiading Gai, Dong-Ju Choi, David O'Neal, Mao Ye +1 more
2013Concurrency and Computation7 citations
Semantic Scholar
Massive parallelization of DSMC combined with the Monotonic Lagrangian Grid
C. Oh, R. Sinkovits, E. Oran, J. Boris +1 more
19957 citations
Semantic Scholar
Computer modeling of thermal quenching of chromium photoluminescence in fluoride elpasolites
A. M. Woods, R. Sinkovits, R. Bartram
19947 citations
Semantic Scholar
A bioinformatics roadmap for the human vaccines project
R. Scheuermann, R. Sinkovits, Theodore Schenkelberg, W. Koff
2017Expert Review of Vaccines6 citations
Semantic Scholar
FlowGate: towards extensible and scalable web-based flow cytometry data analysis
Yu Qian, Hyunsoo Kim, Shweta Purawat, Jian-Wu Wang +6 more
2015Extreme Science and Engineering Discovery Environment6 citations
Semantic Scholar
Voyager – An Innovative Computational Resource for Artificial Intelligence & Machine Learning Applications in Science and Engineering
R. Amaro, Jiunn-Yeu Chen, J. Duarte, Tom Hutton +12 more
2023Practice and Experience in Advanced Research Computing5 citations Open access
Semantic Scholar
Introducing Computing and Technology through Problem-Solving in Discrete Mathematics
R. Sinkovits, Osvaldo D. Soto
2020Practice and Experience in Advanced Research Computing5 citations
Semantic Scholar
Three-dimensional reconstruction of icosahedral particles from single micrographs in real time at the microscope
Giovanni Cardone, Xiao-Dong Yan, R. Sinkovits, Jinghua Tang +1 more
2013Journal of Structural Biology5 citations Open access
Semantic Scholar
Metrics of financial effectiveness: Return On Investment in XSEDE, a national cyberinfrastructure coordination and support organization
C. Stewart, Claudia M. Costa, Julie A. Wernert, David Y. Hancock +13 more
2022Practice and Experience in Advanced Research Computing4 citations Open access
Semantic Scholar
Optimization and parallel load balancing of the MPAS Atmosphere Weather and Climate Code
R. Sinkovits, M. Duda
2016Extreme Science and Engineering Discovery Environment4 citations
Semantic Scholar
Three-Dimensional Asymmetric Reconstruction of Tailed Bacteriophage
Jinghua Tang, R. Sinkovits, T. S. Baker
2010Methods in Enzymology4 citations Open access
Semantic Scholar
Simulations of High Knudsen Number Flows in a Channel-Wedge Configuration
Thuong X. Nguyen, C. Oh, R. Sinkovits, J. Anderson +1 more
19974 citations
Semantic Scholar
Direct simulation Monte Carlo study of H/H2 and H/H2/CO mixtures for diamond chemical vapor deposition
R. Sinkovits, C. DeVore
19964 citations
Semantic Scholar

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T. S. Baker×12
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E. Oran×6
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Shawn M. Strande×6
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M. Tatineni×6
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