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W. Pfeiffer · SciRah

Researcher profile · Semantic Scholar

W. Pfeiffer

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W. Pfeiffer — researcher profile on SciRah

h-index: 14
Works: 39
Citations: 13K

Most-cited papers

Creating the CIPRES Science Gateway for inference of large phylogenetic trees
Mark A. Miller, W. Pfeiffer, Terri Schwartz
2010Grid Computing Environments11K citations Open access
Semantic Scholar
The CIPRES science gateway: a community resource for phylogenetic analyses
Mark A. Miller, W. Pfeiffer, Terri Schwartz
2011TeraGrid Conference526 citations
Semantic Scholar
The CIPRES science gateway: enabling high-impact science for phylogenetics researchers with limited resources
Mark A. Miller, W. Pfeiffer, Terri Schwartz
2012Extreme Science and Engineering Discovery Environment370 citations
Semantic Scholar
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
Qi-Yun Zhu, U. Mai, W. Pfeiffer, S. Janssen +26 more
2019Nature Communications308 citations Open access
Semantic Scholar
Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis
H. Holstege, W. Pfeiffer, D. Sie, M. Hulsman +14 more
2014Genome Research154 citations Open access
Semantic Scholar
Hybrid MPI/Pthreads parallelization of the RAxML phylogenetics code
W. Pfeiffer, A. Stamatakis
2010IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum60 citations
Semantic Scholar
Characterizing Parallel Scaling of Scientific Applications using IPM
N. Wright, W. Pfeiffer, A. Snavely
200949 citations
Semantic Scholar
Expanse: Computing without Boundaries: Architecture, Deployment, and Early Operations Experiences of a Supercomputer Designed for the Rapid Evolution in Science and Engineering
Shawn M. Strande, Hai-Song Cai, M. Tatineni, W. Pfeiffer +14 more
2021Practice and Experience in Advanced Research Computing47 citations Open access
Semantic Scholar
Gateways to Discovery: Cyberinfrastructure for the Long Tail of Science
R. Moore, Chaitan Baru, Diane A. Baxter, Geoffrey Fox +9 more
2014Extreme Science and Engineering Discovery Environment41 citations
Semantic Scholar
Modeling and predicting application performance on parallel computers using HPC challenge benchmarks
W. Pfeiffer, N. Wright
20082008 IEEE International Symposium on Parallel and Distributed Processing31 citations
Semantic Scholar
Benchmarking Advanced Architecture Computers
P. Messina, C. Baillie, E. Felten, P. Hipes +7 more
1990Concurrency Practice and Experience31 citations
Semantic Scholar
Identification of an N-acetylneuraminic acid-presenting bacteria isolated from a human microbiome
Zhen Han, Peter S. Thuy-Boun, W. Pfeiffer, Vincent F. Vartabedian +3 more
2021Scientific Reports26 citations Open access
Semantic Scholar
Whole-genome analysis of mycobacteria from birds at the San Diego Zoo
W. Pfeiffer, J. Braun, J. Burchell, Carmel Witte +1 more
2017PLoS ONE23 citations Open access
Semantic Scholar
RAxML Grove: an empirical phylogenetic tree database
Dimitri Höhler, W. Pfeiffer, V. Ioannidis, H. Stockinger +1 more
2021bioRxiv21 citations Open access
Semantic Scholar
Trestles: a high-productivity HPC system targeted to modest-scale and gateway users
Richard L. Moore, David L. Hart, W. Pfeiffer, M. Tatineni +2 more
2011TeraGrid Conference14 citations
Semantic Scholar
Group-based variant calling leveraging next-generation supercomputing for large-scale whole-genome sequencing studies
K. Standish, Tristan M. Carland, Glenn K. Lockwood, W. Pfeiffer +10 more
2015BMC Bioinformatics12 citations Open access
Semantic Scholar
Peer Review #1 of "Hiding in plain sight: DNA barcoding suggests cryptic species in all ‘well-known’ Australian flower beetles (Scarabaeidae: Cetoniinae) (v0.1)"
A. Mitchell, Chris Moeseneder, P. Hutchinson, V. Allard +158 more
202010 citations Open access
Semantic Scholar
Social network analysis and whole-genome sequencing to evaluate disease transmission in a large, dynamic population: A study of avian mycobacteriosis in zoo birds
Carmel Witte, J. Fowler, W. Pfeiffer, L. Hungerford +4 more
2021PLoS ONE9 citations Open access
Semantic Scholar
Comet: Tales from the Long Tail: Two Years In and 10,000 Users Later
Shawn M. Strande, Hai-Song Cai, Trevor Cooper, K. Flammer +13 more
2017Practice and Experience in Advanced Research Computing9 citations
Semantic Scholar
Embedding CIPRES science gateway capabilities in phylogenetics software environments
Mark A. Miller, Terri Schwartz, W. Pfeiffer
2013Extreme Science and Engineering Discovery Environment8 citations
Semantic Scholar
Marching Towards Nirvana: Configurations for Very High Performance Parallel File Systems
Phil Andrews, C. Jordan, W. Pfeiffer
2006IEEE International Conference on Cluster Computing5 citations
Semantic Scholar
Evaluation of a Multithreaded Architecture for Defense Applications.
W. Pfeiffer, Larry Carter, A. Snavely, R. Leary +1 more
19995 citations Open access
Semantic Scholar
User behavior and usage patterns for a highly accessed science gateway
Mark A. Miller, Terri Schwartz, W. Pfeiffer
2016Extreme Science and Engineering Discovery Environment2 citations
Semantic Scholar
Whole-genome phylogenomics and synteny resolve a single origin of body-plan asymmetry in flatfishes
Julian Gallego-Garcia, Delson Hays, Pakorn Tongboonkua, J. Minich +10 more
2026bioRxiv1 citations Open access
Semantic Scholar
Identification of an N-acetylneuraminic acid-presenting bacteria isolated from a healthy human microbiome
Zhen Han, Peter S. Thuy-Boun, W. Pfeiffer, Vincent F. Vartabedian +3 more
2020bioRxiv1 citations Open access
Semantic Scholar
Performance Characterization and Optimization Assessment of Bioinformatics Applications
Pietro Cicotti, W. Pfeiffer, M. Gujral, R. Sinkovits +2 more
2017Practice and Experience in Advanced Research Computing1 citations
Semantic Scholar
Memory performance model for loops and kernels on Power3 processors
W. Pfeiffer
200418th International Parallel and Distributed Processing Symposium, 2004. Proceedings.1 citations
Semantic Scholar
Independent origins of fish endothermy converge on a developmental regulatory signature
D. Arcila, Fernando Meléndez-Vazquez, Julian Gallego-Garcia, Emily Ignatoff +3 more
2026bioRxiv0 citations Open access
Semantic Scholar
Identification of an N-acetylneuraminic acid-presenting bacteria isolated from a human microbiome
Zhen Han, Peter S. Thuy-Boun, W. Pfeiffer, Vincent F. Vartabedian +3 more
2021Scientific Reports0 citations Open access
Semantic Scholar
Peer Review #2 of "The complete chloroplast genome of Microcycas calocoma (Miq.) A. DC. (Zamiaceae, Cycadales) and evolution in Cycadales (v0.2)"
Aimee Caye, G. Chang, Qiang Lai, Tao Chen +289 more
20200 citations Open access
Semantic Scholar
Peer Review #2 of "Behavioral, morphological, and ecological trait evolution in two clades of New World Sparrows (Aimophila and Peucaea, Passerellidae) (v0.1)"
C. Cicero, N. Mason, L. Benedict, J. Rising +234 more
20200 citations Open access
Semantic Scholar
Peer Review #1 of "Molecular phylogenetics and evolutionary history of the endemic land snail genus Everettia in northern Borneo (v0.2)"
T. Liew, M. Marzuki, M. Schilthuizen, Yan-Sen Chen +314 more
20200 citations Open access
Semantic Scholar
The CIPRES Science Gateway at Year 6: Lessons learned and best practices
Mark A. Miller, Terri Schwartz, W. Pfeiffer
20170 citations
Semantic Scholar
The CIPRES Science Gateway after seven years: Lessons learned and best practices
Mark A. Miller, Terri Schwartz, W. Pfeiffer
20160 citations
Semantic Scholar
B- 5 AMBER- Molecular Dynamics Collaborators:
D. Case, J. Greenberg, W. Pfeiffer, Jack M. Rogers
20070 citations
Semantic Scholar
Achieving High Performance on the BlueGene/L Supercomputer
G. Almási, G. Bhanot, S. Chatterjee, A. Gara +15 more
2006Parallel Processing for Scientific Computing0 citations
Semantic Scholar
Findings of the joint NSF-NASA initiative in evaluation
S. Hotovy, W. Pfeiffer, T. Sterling
1994Supercomputing '940 citations Open access
Semantic Scholar
Scalable supercomputing
W. Pfeiffer
1993Proceedings of the 15th Annual International Conference of the IEEE Engineering in Medicine and Biology Societ0 citations
Semantic Scholar
Benchmarking and optimization of scientific codes on the CRAY X-MP, CRAY-2, and SCS-40 vector computers
W. Pfeiffer, A. Alagar, A. Kamrath, R. Leary +1 more
1990Journal of Supercomputing0 citations
Semantic Scholar

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