Skip to content

Home Search Authors Pakistan News Saved

SciRah

SciRah does not host or store research papers. Results come live from free, official scholarly APIs, and every paper links back to its original source.

Data sources

OpenAlex
Semantic Scholar
Crossref
CORE
arXiv
PubMed

Privacy policy Terms of service

S. Killcoyne · SciRah

Researcher profile · Semantic Scholar

S. Killcoyne

Share profile

S. Killcoyne — researcher profile on SciRah

h-index: 18
Works: 50
Citations: 3,836

Most-cited papers

Integration of biological networks and gene expression data using Cytoscape
Melissa S. Cline, Michael Smoot, E. Cerami, A. Kuchinsky +28 more
2007Nature Protocols2,546 citations Open access
Semantic Scholar
Cytoscape: a community-based framework for network modeling.
S. Killcoyne, G. W. Carter, Jennifer J. Smith, J. Boyle
2009Methods in molecular biology247 citations
Semantic Scholar
The landscape of selection in 551 esophageal adenocarcinomas defines genomic biomarkers for the clinic
A. Frankell, S. Jammula, Xiao-Dun Li, G. Contino +13 more
2018Nature Genetics207 citations Open access
Semantic Scholar
Identification of Subtypes of Barrett’s Esophagus and Esophageal Adenocarcinoma Based on DNA Methylation Profiles and Integration of Transcriptome and Genome Data
S. Jammula, A. Katz-Summercorn, Xiao-Dun Li, C. Linossi +14 more
2020Gastroenterology91 citations Open access
Semantic Scholar
T1DBase: integration and presentation of complex data for type 1 diabetes research
E. Hulbert, L. Smink, E. Adlem, James E. Allen +16 more
2006Nucleic Acids Res.75 citations Open access
Semantic Scholar
Identification of prognostic phenotypes of esophageal adenocarcinoma in two independent cohorts
Tarek Sawas, S. Killcoyne, P. Iyer, Kenneth K. Wang +89 more
2018Gastroenterology74 citations Open access
Semantic Scholar
Genomic copy number predicts esophageal cancer years before transformation
S. Killcoyne, Eleanor Gregson, D. Wedge, D. Woodcock +10 more
2020Nature Medicine73 citations Open access
Semantic Scholar
Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework
Steven Lewis, A. Csordas, S. Killcoyne, H. Hermjakob +4 more
2012BMC Bioinformatics66 citations Open access
Semantic Scholar
Evolution and progression of Barrett’s oesophagus to oesophageal cancer
S. Killcoyne, R. Fitzgerald
2021Nature Reviews. Cancer65 citations
Semantic Scholar
Use of a Cytosponge biomarker panel to prioritise endoscopic Barrett's oesophagus surveillance: a cross-sectional study followed by a real-world prospective pilot
N. Pilonis, S. Killcoyne, W. K. Tan, M. O'Donovan +15 more
2022The Lancet Oncology60 citations Open access
Semantic Scholar
Genomic copy number predicts oesophageal cancer years before transformation
S. Killcoyne, Eleanor Gregson, D. Wedge, D. Woodcock +9 more
2020bioRxiv53 citations Open access
Semantic Scholar
Enabling large-scale screening of Barrett’s esophagus using weakly supervised deep learning in histopathology
K. Bouzid, H. Sharma, S. Killcoyne, Daniel Coelho de Castro +12 more
2023Nature Communications34 citations Open access
Semantic Scholar
Managing Chaos: Lessons Learned Developing Software in the Life Sciences
S. Killcoyne, J. Boyle
2009Computing in science & engineering (Print)34 citations Open access
Semantic Scholar
Mutational signature dynamics shaping the evolution of oesophageal adenocarcinoma
Sujath Abbas, O. Pich, G. Devonshire, S. Zamani +76 more
2023Nature Communications27 citations Open access
Semantic Scholar
Aneuploidy in targeted endoscopic biopsies outperforms other tissue biomarkers in the prediction of histologic progression of Barrett’s oesophagus: a multi-centre prospective cohort study
Andreas V. Hadjinicolaou, S. V. van Munster, A. Achilleos, José Santiago García +5 more
2020EBioMedicine25 citations Open access
Semantic Scholar
Adaptable data management for systems biology investigations
J. Boyle, Hector Rovira, C. Cavnor, D. Burdick +2 more
2009BMC Bioinformatics23 citations Open access
Semantic Scholar
T1DBase: integration and presentation of complex data for type 1 diabetes research
E. Hulbert, L. Smink, E. Adlem, James E. Allen +17 more
2007Nucleic Acids Research20 citations Open access
Semantic Scholar
Limitations of Heartburn and other Societies' Criteria in Barrett's Screening for Detecting De-novo Esophageal Adenocarcinoma.
Tarek Sawas, S. Zamani, S. Killcoyne, A. Dullea +4 more
2021Clinical Gastroenterology and Hepatology19 citations Open access
Semantic Scholar
Genomic instability signals offer diagnostic possibility in early cancer detection.
S. Killcoyne, A. Yusuf, R. Fitzgerald
2021Trends in Genetics17 citations Open access
Semantic Scholar
SAMQA: error classification and validation of high-throughput sequenced read data
Thomas Robinson, S. Killcoyne, Ryan Bressler, J. Boyle
2011BMC Genomics17 citations Open access
Semantic Scholar
Rearrangement processes and structural variations show evidence of selection in oesophageal adenocarcinomas
A. Ng, G. Contino, S. Killcoyne, G. Devonshire +9 more
2022Communications Biology15 citations Open access
Semantic Scholar
Real-world implementation of non-endoscopic triage testing for Barrett’s oesophagus during COVID-19
R. Landy, S. Killcoyne, Charlene Tang, S. Juniat +4 more
2023QJM : monthly journal of the Association of Physicians12 citations Open access
Semantic Scholar
Methods for visual mining of genomic and proteomic data atlases
J. Boyle, R. Kreisberg, Ryan Bressler, S. Killcoyne
2012BMC Bioinformatics10 citations Open access
Semantic Scholar
FIGG: Simulating populations of whole genome sequences for heterogeneous data analyses
S. Killcoyne, A. del Sol
2014BMC Bioinformatics8 citations Open access
Semantic Scholar
Comparison of Phenotypes and Risk Factors for Esophageal Adenocarcinoma at Present vs Prior Decades.
Tarek Sawas, N. Azad, S. Killcoyne, P. Iyer +3 more
2019Clinical Gastroenterology and Hepatology6 citations
Semantic Scholar
Identification of large-scale genomic variation in cancer genomes using in silico reference models
S. Killcoyne, A. del Sol
2015Nucleic Acids Research5 citations Open access
Semantic Scholar
Mining PeptideAtlas for biomarkers and therapeutics in human disease
S. Killcoyne, E. Deutsch, J. Boyle
2012Current pharmaceutical design4 citations Open access
Semantic Scholar
Managing Chaos: Bridging the cultural divide between engineers and scientists working within the life sciences
S. Killcoyne, J. Boyle
20093 citations
Semantic Scholar
An Integration Architecture Designed to Deal with the Issues of Biological Scope, Scale and Complexity
Hector Rovira, S. Killcoyne, I. Shmulevich, J. Boyle
2010Data Integration in the Life Sciences2 citations
Semantic Scholar
Integrated epidemiological and molecular data inform the relationship between precancer and cancer states of esophageal adenocarcinoma
S. Zamani, Lianlian Wu, Emily L. Black, Alexander Bartram +16 more
2026Nature Medicine1 citations Open access
Semantic Scholar
Feasibility of primary care-based early detection of Barrett’s oesophagus and oesophageal adenocarcinoma in patients with reflux using capsule sponge testing: real-world insights from the CYTOPRIME 2 Study
Monica Della Rosa, Ruchika Kularni, R. Hardwick, Basirat Afinowi +5 more
2025Frontline Gastroenterology1 citations Open access
Semantic Scholar
P260 Comparative evaluation of two non-endoscopic oesophageal cell collection devices: a diagnostic equivalency study
Ruchika Kulkarni, Monica Della Rosa, S. Killcoyne, Marcel Gehrung
2024Poster Presentations1 citations
Semantic Scholar
Practical early cancer detection: distinguishing stable from unstable genomes in pre-cancerous tissues
S. Killcoyne, R. Fitzgerald
2020British Journal of Cancer1 citations Open access
Semantic Scholar
Process-specific somatic mutation distributions vary with three-dimensional genome structure
K. Akdemir, Victoria T. Le, S. Killcoyne, Devin A. King +20 more
2018bioRxiv1 citations Open access
Semantic Scholar
O73 Capsule sponge sorted-cell methylome mapping with a reference atlas identifies differentially methylated biomarker candidates in barrett’s oesophagus
A. Ustaoglu, Timothy Somerset, Rebecca Walker-Smith, S. Killcoyne +1 more
2026Oral Abstracts0 citations Open access
Semantic Scholar
Su1307: CLINICAL VALIDATION OF A DNA METHYLATION PANEL FOR NONENDOSCOPIC DIAGNOSIS OF BARRETT’S ESOPHAGUS IN A MULTICENTER COHORT
S. Killcoyne, Monica Della Rosa, Emma-Jane Ditter, Radina Georgieva +3 more
2025Gastroenterology0 citations
Semantic Scholar
O1 Primary care-based early detection of barrett’s oesophagus in patients with reflux using EndoSign®: real world insights from the CYTOPRIME2 study
Peter Holloway, Monica Della Rosa, Ruchika Kulkarni, Basirat Afinowi +5 more
2025Oral Presentations0 citations
Semantic Scholar
293: NON-ENDOSCOPIC OESOPHAGEAL SPONGE SAMPLING CAN ACCURATELY MEASURE DISEASE ACTIVITY AND REMISSION IN ADULTS WITH EOSINOPHILIIC OESOPHAGITIS
A. Rai, Radina Georgieva, Rohith Kumar, L. Mears +7 more
2025Gastroenterology0 citations
Semantic Scholar
Pan-oesophageal and spatially resolved genetic analysis reveals instability signature for earlier diagnosis of squamous cell cancer
Aisha Yusuf, S. Malhotra, M. O'Donovan, G. Devonshire +11 more
2025medRxiv0 citations Open access
Semantic Scholar
O54 Can we use capsule spongesampling insteadof gastroscopy tomonitor patient with eosinophilic oesophagitis? A multi-center study
A. Rai, Radina Georgieva, Rohith Kumar, L. Mears +9 more
2025Oral Presentations0 citations
Semantic Scholar
94 BEYOND TFF3: IDENTIFYING NON-ENDOSCOPIC DNA METHYLATION BIOMARKERS FOR IMPROVED DIAGNOSIS OF BARRETT'S ESOPHAGUS
Monica Della Rosa, Kathryn Bailey, Grace X. Li, A. Bowman +4 more
2024Gastroenterology0 citations
Semantic Scholar
O37 Real world implementation of non-endoscopic triage testing for Reflux disease and Barrett’s oesophagus during COVID-19
R. Landy, W. K. Tan, S. Killcoyne, M. di Pietro +6 more
2023Oral presentations0 citations
Semantic Scholar
Title: Identification of Subtypes of Barrett’s Esophagus and Esophageal Adenocarcinoma 1 Based on DNA Methylation Profiles and Integration of Transcriptome and Genome Data
S. Jammula, A. Katz-Summercorn, Xiao-Dun Li, C. Linossi +14 more
20200 citations
Semantic Scholar
Mo1039 EARLY DETECTION OF ESOPHAGEAL ADENOCARCINOMA PROGRESSION USING WHOLE-GENOME COPY NUMBER IN PREMALIGNANT TISSUE
S. Killcoyne
20200 citations
Semantic Scholar
Shallow Whole Genome Sequencing can Detect Copy Number Changes in FFPE Material in the Progression of Barrett's Esophagus
Eleanor Gregson, S. Killcoyne, D. Wedge, Matthew Eldridge +5 more
20170 citations
Semantic Scholar
Insilico genomes for high-throughput sequencing cancer-specific analysis
S. Killcoyne
20150 citations
Semantic Scholar
Interfaces to PeptideAtlas: a case study of standard data access systems
S. Killcoyne, Jeremy Handcock, Thomas Robinson, E. Deutsch +1 more
2012Briefings Bioinform.0 citations Open access
Semantic Scholar
SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments
D. Burdick, C. Cavnor, Jeremy Handcock, S. Killcoyne +7 more
2010BMC Bioinformatics0 citations Open access
Semantic Scholar
Howdah - A Flexible Pipeline Framework for Analyzing Genomic Data
Steven Lewis, S. Reynolds, Hector Rovera, Mike O'Leary +3 more
20102010 IEEE Second International Conference on Cloud Computing Technology and Science0 citations
Semantic Scholar
T1DBase: community website for type 1 diabetes research
E. Helton, O. Burren, D. Burdick, Alex C. Lam +11 more
20050 citations
Semantic Scholar

Frequent co-authors

Invite them to SciRah by sharing their profile.

R. Fitzgerald×16
Invite
R. Fitzgerald — researcher profile on SciRah
J. Boyle×12
Invite
J. Boyle — researcher profile on SciRah
G. Devonshire×8
Invite
G. Devonshire — researcher profile on SciRah
Sujath Abbas×7
Invite
Sujath Abbas — researcher profile on SciRah

×6

Invite

N. Grehan — researcher profile on SciRah

Invite

A. Miremadi — researcher profile on SciRah

Invite

S. Jammula — researcher profile on SciRah

Invite

S. Tavaré — researcher profile on SciRah

M. O'Donovan×5

Invite

M. O'Donovan — researcher profile on SciRah

Invite

D. Burdick — researcher profile on SciRah

Invite

C. Cavnor — researcher profile on SciRah

Matthew Eldridge×5

Invite

Matthew Eldridge — researcher profile on SciRah