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Augustin Luna · SciRah

Researcher profile · Semantic Scholar

Augustin Luna

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Augustin Luna — researcher profile on SciRah

h-index: 33
Works: 106
Citations: 17K

Most-cited papers

The Immune Landscape of Cancer
V. Thorsson, D. Gibbs, S. Brown, D. Wolf +496 more
2018Immunity4,928 citations Open access
Semantic Scholar
Oncogenic Signaling Pathways in The Cancer Genome Atlas
F. Sánchez-Vega, M. Mina, J. Armenia, W. Chatila +496 more
2018Cell2,752 citations Open access
Semantic Scholar
Comprehensive Characterization of Cancer Driver Genes and Mutations
M. Bailey, C. Tokheim, E. Porta-Pardo, Sohini Sengupta +496 more
2018Cell2,066 citations Open access
Semantic Scholar
An Integrated Metabolic Atlas of Clear Cell Renal Cell Carcinoma
A. Hakimi, Ed Reznik, Chung-Han Lee, C. Creighton +15 more
2016Cancer Cell708 citations Open access
Semantic Scholar
Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures
Y. Şenbabaoğlu, Ron S. Gejman, A. Winer, Ming Liu +25 more
2016Genome Biology637 citations Open access
Semantic Scholar
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data
I. Rodchenkov, Ö. Babur, Augustin Luna, B. Aksoy +21 more
2019Nucleic Acids Res.289 citations Open access
Semantic Scholar
Erratum to: Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures
Y. Şenbabaoğlu, Ron S. Gejman, A. Winer, Ming Liu +25 more
2017Genome Biology273 citations Open access
Semantic Scholar
scPerturb: harmonized single-cell perturbation data
Stefan Peidli, Tessa D. Green, Ci-Yue Shen, Torsten Gross +9 more
2023bioRxiv227 citations Open access
Semantic Scholar
CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics
Augustin Luna, Fathi Elloumi, Sudhir Varma, Yang-Hsin Wang +6 more
2020Nucleic Acids Res.178 citations Open access
Semantic Scholar
A Landscape of Metabolic Variation Across Tumor Types
Ed Reznik, Augustin Luna, B. Aksoy, E. Liu +5 more
2018Cell Systems155 citations Open access
Semantic Scholar
LLGL2 rescues nutrient stress by promoting leucine uptake in ER+ breast cancer
Yasuhiro Saito, Lewyn Li, É. Coyaud, Augustin Luna +5 more
2019Nature148 citations
Semantic Scholar
Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas
G. Way, F. Sánchez-Vega, K. La, J. Armenia +9 more
2018Cell Reports142 citations Open access
Semantic Scholar
SCLC-CellMiner: A Resource for Small Cell Lung Cancer Cell Line Genomics and Pharmacology Based on Genomic Signatures
C. Tlemsani, L. Pongor, Fathi Elloumi, L. Girard +15 more
2020Cell Reports138 citations Open access
Semantic Scholar
CellMinerCDB for Integrative Cross-Database Genomics and Pharmacogenomics Analyses of Cancer Cell Lines
Vinodh N. Rajapakse, Augustin Luna, Mihoko Yamade, Lisa Loman +13 more
2018iScience131 citations Open access
Semantic Scholar
CellBox: Interpretable Machine Learning for Perturbation Biology with Application to the Design of Cancer Combination Therapy.
Bo Yuan, Ci-Yue Shen, Augustin Luna, A. Korkut +3 more
2020Cell Systems120 citations Open access
Semantic Scholar
Software support for SBGN maps: SBGN-ML and LibSBGN
Martijn P. van Iersel, A. Villéger, Tobias Czauderna, Sarah E. Boyd +13 more
2012Bioinform.102 citations Open access
Semantic Scholar
SIRT1/PARP1 crosstalk: connecting DNA damage and metabolism
Augustin Luna, M. Aladjem, K. Kohn
2013Genome Integrity95 citations Open access
Semantic Scholar
Causal interactions from proteomic profiles: Molecular data meet pathway knowledge
Ö. Babur, Augustin Luna, A. Korkut, Funda Durupinar +10 more
2021Patterns71 citations Open access
Semantic Scholar
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms
M. Ostaszewski, A. Niarakis, A. Mazein, I. Kuperstein +135 more
2021Molecular Systems Biology70 citations Open access
Semantic Scholar
The digital revolution in phenotyping
A. Oellrich, Nigel Collier, T. Groza, Dietrich Rebholz-Schuhmann +15 more
2015Briefings Bioinform.59 citations Open access
Semantic Scholar
Alterations of DNA repair genes in the NCI-60 cell lines and their predictive value for anticancer drug activity
F. Sousa, R. Matuo, Sai-Wen Tang, Vinodh N. Rajapakse +7 more
2015DNA Repair59 citations Open access
Semantic Scholar
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0
Adrien Rougny, Vasundra Touré, S. Moodie, Irina Balaur +13 more
2019Journal of Integrative Bioinformatics58 citations Open access
Semantic Scholar
Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines
T. Guo, Augustin Luna, Vinodh N. Rajapakse, C. Koh +35 more
2019iScience57 citations Open access
Semantic Scholar
The NCI-60 Methylome and its Integration into CellMiner
W. Reinhold, Sudhir Varma, Margot Sunshine, Vinodh N. Rajapakse +12 more
2016Cancer Research57 citations Open access
Semantic Scholar
Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2
H. Mi, Falk Schreiber, S. Moodie, Tobias Czauderna +6 more
2015Journal of Integrative Bioinformatics53 citations Open access
Semantic Scholar
Profiling PARP inhibitors
E. Demir, Michael P. Cary, Suzanne M. Paley, Ken Fukuda +86 more
2012Nature Biotechnology50 citations Open access
Semantic Scholar
Journal of Integrative Bioinformatics
Hasan Baig, Pedro Fontanarossa, V. Kulkarni, James Alastair McLaughlin +30 more
202048 citations
Semantic Scholar
rcellminer: exploring molecular profiles and drug response of the NCI-60 cell lines in R
Augustin Luna, Vinodh N. Rajapakse, F. Sousa, Jian-Jiong Gao +5 more
2016Bioinform.44 citations Open access
Semantic Scholar
Communicating Structure and Function in Synthetic Biology Diagrams
J. Beal, Tramy T. Nguyen, T. Gorochowski, Ángel Goñi-Moreño +20 more
2019ACS Synthetic Biology35 citations Open access
Semantic Scholar
Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches
A. Niarakis, M. Ostaszewski, A. Mazein, I. Kuperstein +73 more
2024Frontiers in Immunology34 citations Open access
Semantic Scholar
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0
R. Cox, C. Madsen, James Alastair McLaughlin, Tramy T. Nguyen +19 more
2018Journal of Integrative Bioinformatics32 citations Open access
Semantic Scholar
Gene Expression Profiles of the NCI-60 Human Tumor Cell Lines Define Molecular Interaction Networks Governing Cell Migration Processes
K. Kohn, B. Zeeberg, W. Reinhold, Margot Sunshine +2 more
2012PLoS ONE31 citations Open access
Semantic Scholar
Using drug response data to identify molecular effectors, and molecular “omic” data to identify candidate drugs in cancer
W. Reinhold, Sudhir Varma, Vinodh N. Rajapakse, Augustin Luna +3 more
2014Human Genetics30 citations Open access
Semantic Scholar
PaxtoolsR: pathway analysis in R using Pathway Commons
Augustin Luna, Ö. Babur, B. Aksoy, E. Demir +1 more
2015bioRxiv29 citations Open access
Semantic Scholar
Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2
A. Sorokin, N. Le Novère, Augustin Luna, Tobias Czauderna +6 more
2015Journal of Integrative Bioinformatics29 citations Open access
Semantic Scholar
Systems biology graphical notation markup language (SBGNML) version 0.3
Frank T. Bergmann, Tobias Czauderna, U. Dogrusoz, Adrien Rougny +5 more
2020Journal of Integrative Bioinformatics28 citations Open access
Semantic Scholar
Precision combination therapies based on recurrent oncogenic co-alterations
Xubin Li, Elisabeth K. Dowling, Gong-Hong Yan, Zeynep Dereli +10 more
2020bioRxiv28 citations Open access
Semantic Scholar
A pan-cancer survey of cell line tumor similarity by feature-weighted molecular profiles
Rileen Sinha, Augustin Luna, N. Schultz, C. Sander
2021Cell Reports Methods25 citations Open access
Semantic Scholar
A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method
Augustin Luna, Evrim I. Karac, Margot Sunshine, L. Chang +3 more
2011BMC Bioinformatics24 citations Open access
Semantic Scholar
Predicted Role of NAD Utilization in the Control of Circadian Rhythms during DNA Damage Response
Augustin Luna, G. McFadden, M. Aladjem, K. Kohn
2015PLoS Comput. Biol.21 citations Open access
Semantic Scholar
PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs)
Augustin Luna, Margot Sunshine, M. V. van Iersel, M. Aladjem +1 more
2011Bioinform.20 citations Open access
Semantic Scholar
CellMinerCDB: NCATS is a Web-Based Portal Integrating Public Cancer Cell Line Databases for Pharmacogenomic Explorations
W. Reinhold, Kelli M. Wilson, Fathi Elloumi, K. Bradwell +13 more
2023Cancer Research18 citations Open access
Semantic Scholar
Abstract 3144: Mapping the functional interactions at the tumor-immune checkpoint interface
Behnaz Bozorgui, Elisabeth K. Kong, Augustin Luna, A. Korkut
2023Cancer Research18 citations
Semantic Scholar
Proteomic Dynamics of Breast Cancer Cell Lines Identifies Potential Therapeutic Protein Targets
Rui Sun, W. Ge, Y. Zhu, A. Sayad +18 more
2023Molecular & Cellular Proteomics17 citations Open access
Semantic Scholar
scPerturb: Information Resource for Harmonized Single-Cell Perturbation Data
Tessa D. Green, Stefan Peidli, Ci-Yue Shen, Torsten Gross +7 more
202216 citations
Semantic Scholar
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1
C. Madsen, Ángel Goñi Moreno, Zachary Palchick, U. P +24 more
2019Journal of Integrative Bioinformatics16 citations Open access
Semantic Scholar
The landscape of T cell infiltration in human cancer and its association with antigen presenting gene expression
Y. Şenbabaoğlu, A. Winer, Ron S. Gejman, Ming Liu +17 more
2015bioRxiv15 citations Open access
Semantic Scholar
Cilengitide sensitivity is predicted by overall integrin expression in breast cancer
Nomeda Girnius, Aylin Z. Henstridge, Benjamin Marks, Jeffrey K. Yu +4 more
2024Breast Cancer Research14 citations Open access
Semantic Scholar
Author-sourced capture of pathway knowledge in computable form using Biofactoid
Jeff Wong, Max Franz, M. Siper, Dylan Fong +11 more
2021eLife12 citations Open access
Semantic Scholar
Analyzing causal relationships in proteomic profiles using CausalPath
Augustin Luna, M. Siper, A. Korkut, Funda Durupinar +5 more
2021STAR Protocols12 citations Open access
Semantic Scholar

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Sudhir Varma — researcher profile on SciRah

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U. Dogrusoz — researcher profile on SciRah

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