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Tramy T. Nguyen · SciRah

Researcher profile · Semantic Scholar

Tramy T. Nguyen

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Tramy T. Nguyen — researcher profile on SciRah

h-index: 16
Works: 40
Citations: 968

Most-cited papers

SBML Level 3: an extensible format for the exchange and reuse of biological models
Sarah M. Keating, D. Waltemath, Matthias König, Feng-Kai Zhang +137 more
2020Molecular Systems Biology269 citations Open access
Semantic Scholar
Sharing Structure and Function in Biological Design with SBOL 2.0.
Nicholas Roehner, J. Beal, Kevin Clancy, Bryan A. Bartley +15 more
2016ACS Synthetic Biology84 citations Open access
Semantic Scholar
iBioSim 3: A Tool for Model-Based Genetic Circuit Design.
Leandro H. Watanabe, Tramy T. Nguyen, Michael Zhang, Z. Zundel +4 more
2018ACS Synthetic Biology80 citations
Semantic Scholar
Journal of Integrative Bioinformatics
Hasan Baig, Pedro Fontanarossa, V. Kulkarni, James Alastair McLaughlin +30 more
202048 citations
Semantic Scholar
Synthetic Biology Open Language (SBOL) Version 2.2.0
R. Cox, C. Madsen, James Alastair McLaughlin, Tramy T. Nguyen +19 more
2018Journal of Integrative Bioinformatics40 citations Open access
Semantic Scholar
A Computational Workflow for the Automated Generation of Models of Genetic Designs.
Goksel Misirli, Tramy T. Nguyen, James Alastair McLaughlin, P. Vaidyanathan +4 more
2019ACS Synthetic Biology36 citations Open access
Semantic Scholar
Synthetic Biology Open Language (SBOL) Version 2.3
C. Madsen, Ángel Goñi Moreno, U. P, Zachary Palchick +27 more
2019Journal of Integrative Bioinformatics35 citations Open access
Semantic Scholar
Communicating Structure and Function in Synthetic Biology Diagrams
J. Beal, Tramy T. Nguyen, T. Gorochowski, Ángel Goñi-Moreño +20 more
2019ACS Synthetic Biology35 citations Open access
Semantic Scholar
Synthetic Biology Open Language (SBOL) Version 2.0.0
Bryan A. Bartley, J. Beal, Kevin Clancy, Goksel Misirli +11 more
2015Journal of Integrative Bioinformatics35 citations Open access
Semantic Scholar
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0
R. Cox, C. Madsen, James Alastair McLaughlin, Tramy T. Nguyen +19 more
2018Journal of Integrative Bioinformatics32 citations Open access
Semantic Scholar
A standard-enabled workflow for synthetic biology.
C. Myers, J. Beal, T. Gorochowski, Hiroyuki Kuwahara +9 more
2017Biochemical Society Transactions32 citations Open access
Semantic Scholar
Generating Systems Biology Markup Language Models from the Synthetic Biology Open Language.
Nicholas Roehner, Zhen Zhang, Tramy T. Nguyen, C. Myers
2015ACS Synthetic Biology31 citations
Semantic Scholar
libSBOLj 2.0: A Java Library to Support SBOL 2.0
Zhen Zhang, Tramy T. Nguyen, Nicholas Roehner, Goksel Misirli +8 more
2015IEEE Life Sciences Letters28 citations Open access
Semantic Scholar
Synthetic Biology Open Language (SBOL) Version 2.0.0.
Bryan A. Bartley, J. Beal, Kevin Clancy, Goksel Misirli +11 more
2015Journal of Integrative Bioinformatics24 citations
Semantic Scholar
A Converter from the Systems Biology Markup Language to the Synthetic Biology Open Language.
Tramy T. Nguyen, Nicholas Roehner, Z. Zundel, C. Myers
2016ACS Synthetic Biology23 citations
Semantic Scholar
Synthetic Biology Open Language (SBOL) Version 2.1.0
J. Beal, R. Cox, R. Grünberg, James Alastair McLaughlin +19 more
2016Journal of Integrative Bioinformatics19 citations Open access
Semantic Scholar
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1
C. Madsen, Ángel Goñi Moreno, Zachary Palchick, U. P +24 more
2019Journal of Integrative Bioinformatics16 citations Open access
Semantic Scholar
Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop
Breschine Cummins, Justin D. Vrana, Robert C. Moseley, Hamed Eramian +28 more
2022bioRxiv14 citations Open access
Semantic Scholar
Design of Asynchronous Genetic Circuits
Tramy T. Nguyen, Timothy S. Jones, Pedro Fontanarrosa, Jeanet V. Mante +3 more
2019Proceedings of the IEEE13 citations Open access
Semantic Scholar
pySBOL: A Python Package for Genetic Design Automation and Standardization.
Bryan A. Bartley, Kiri Choi, Meher Samineni, Z. Zundel +3 more
2018ACS Synthetic Biology13 citations
Semantic Scholar
Synthetic biology open language visual (SBOL visual) version 2.2
Hasan Baig, Pedro Fontanarrosa, V. Kulkarni, James Alastair McLaughlin +30 more
2020Journal of Integrative Bioinformatics12 citations Open access
Semantic Scholar
Round Trip: An Automated Pipeline for Experimental Design, Execution, and Analysis.
D. Bryce, R. Goldman, Matthew DeHaven, J. Beal +16 more
2022ACS Synthetic Biology9 citations
Semantic Scholar
Synthetic biology open language visual (SBOL Visual) version 2.3
Hasan Baig, Pedro Fontanarossa, V. Kulkarni, James Alastair McLaughlin +32 more
2021Journal of Integrative Bioinformatics9 citations Open access
Semantic Scholar
Highly-automated, high-throughput replication of yeast-based logic circuit design assessments
R. Goldman, Robert C. Moseley, Nicholas Roehner, Breschine Cummins +32 more
2022bioRxiv7 citations Open access
Semantic Scholar
XPlan: Experiment Planning for Synthetic Biology
Matthew DeHaven, Christopher W. Geib, Alex Plotnick, Tramy T. Nguyen +1 more
20187 citations
Semantic Scholar
Intent Parser: A Tool for Codification and Sharing of Experimental Design.
Tramy T. Nguyen, Nicholas Walczak, Daniel Sumorok, Mark Weston +1 more
2021ACS Synthetic Biology6 citations
Semantic Scholar
Theory and design of perfect reconstruction transmultiplexers and their relation to perfect reconstruction QMF banks
R. Koilpillai, Tramy T. Nguyen, P. Vaidyanathan
1989Twenty-Third Asilomar Conference on Signals, Systems and Computers, 1989.4 citations
Semantic Scholar
Intent Parser: a tool for codifying experiment design
Tramy T. Nguyen, Nicholas Walczak, J. Beal, Daniel Sumorok +1 more
20213 citations
Semantic Scholar
Collaborative Terminology: SBOL Project Dictionary
J. Beal, Daniel Sumorok, Bryan A. Bartley, Tramy T. Nguyen
20213 citations
Semantic Scholar
Computational Prediction of Synthetic Circuit Function Across Growth Conditions
Breschine Cummins, Robert C. Moseley, Anastasia Deckard, Mark Weston +26 more
2022bioRxiv2 citations Open access
Semantic Scholar
Data Representation in the DARPA SD2 Program
Nicholas Roehner, J. Beal, Bryan A. Bartley, R. Markeloff +10 more
2021bioRxiv1 citations Open access
Semantic Scholar
Orthonormal filter banks with linear phase filters
A. Soman, P. Vaidyanathan, Tramy T. Nguyen
1992[1992] Conference Record of the Twenty-Sixth Asilomar Conference on Signals, Systems & Computers1 citations
Semantic Scholar
sbmlteam/jsbml: JSBML 1.5
Nicolas Rodriguez, Andreas Dräger, DEVetter, M. Hucka +24 more
20200 citations
Semantic Scholar
The Synthetic Biology Open Language Supports Integration of the Engineering Life-Cycle for Synthetic Biologists
Bryan A. Bartley, Christian Atallah, A. Humphries, V. Kulkarni +12 more
20190 citations
Semantic Scholar
DEMO : XPlan – Experiment Planning for Synthetic Biology
Matthew DeHaven, Christopher W. Geib, Alex Plotnick, Tramy T. Nguyen +1 more
20180 citations
Semantic Scholar
A synthetic biology workflow using SBOL
C. Myers, James Alastair McLaughlin, Goksel Misirli, Tramy T. Nguyen +4 more
20170 citations
Semantic Scholar
THE FOLLOWING PARTICIPANTS WERE PROVIDED FINANCIAL SUPPORT BY OUR SPONSORS TO ATTEND
Gleb Kuznetsov, Hai-Yao Huang, Hasan Baig, Jacob R. Becraft +18 more
20150 citations
Semantic Scholar
A Simple Proof of theAlternation Theorem
P. Vaidyanathan, Tramy T. Nguyen
20070 citations
Semantic Scholar
Automatic Segmentation of Speech
P. Vaidyanathan, Tramy T. Nguyen, Z. Doganata, T. Sara +3 more
19910 citations
Semantic Scholar
New lattice structures for the design of perfect reconstruction quadrature mirror filter banks with image-symmetry property
Tramy T. Nguyen, P. Vaidyanathan
19870 citations
Semantic Scholar

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