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R. Stocker · SciRah

Researcher profile · Semantic Scholar

R. Stocker

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R. Stocker — researcher profile on SciRah

h-index: 69
Works: 281
Citations: 16K

Most-cited papers

Zooming in on the phycosphere: the ecological interface for phytoplankton–bacteria relationships
J. Seymour, S. Amin, J. Raina, R. Stocker
2017Nature Microbiology995 citations
Semantic Scholar
High-avidity IgA protects the intestine by enchaining growing bacteria
K. Moor, Médéric Diard, M. E. Sellin, Boas Felmy +21 more
2017Nature409 citations
Semantic Scholar
Trophic Interactions and the Drivers of Microbial Community Assembly.
Matti Gralka, Rachel E. Szabo, R. Stocker, O. Cordero
2020Current Biology320 citations Open access
Semantic Scholar
Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization
Fátima C. Pereira, Kenneth Wasmund, Iva Čobanković, N. Jehmlich +10 more
2020Nature Communications301 citations Open access
Semantic Scholar
Environmental fluctuations and their effects on microbial communities, populations and individuals
Jen Nguyen, Juanita Lara-Gutiérrez, R. Stocker
2020FEMS Microbiology Reviews292 citations Open access
Semantic Scholar
The ecological roles of bacterial chemotaxis
Johannes M. Keegstra, F. Carrara, R. Stocker
2022Nature Reviews Microbiology259 citations
Semantic Scholar
The role of microbial motility and chemotaxis in symbiosis
J. Raina, Vicente I. Fernandez, Bennett S. Lambert, R. Stocker +1 more
2019Nature Reviews Microbiology240 citations
Semantic Scholar
An automated Raman-based platform for the sorting of live cells by functional properties
K. Lee, Márton Palatinszky, Fátima C. Pereira, Jen Nguyen +7 more
2019Nature Microbiology235 citations Open access
Semantic Scholar
Phytoplankton can actively diversify their migration strategy in response to turbulent cues
A. Sengupta, F. Carrara, R. Stocker
2017Nature167 citations
Semantic Scholar
Raman microspectroscopy for microbiology
Kang-Soo Lee, Z. Landry, Fátima C. Pereira, M. Wagner +8 more
2021Nature Reviews Methods Primers148 citations
Semantic Scholar
Not Just Going with the Flow: The Effects of Fluid Flow on Bacteria and Plankton.
J. Wheeler, E. Secchi, R. Rusconi, R. Stocker
2019Annual Review of Cell and Developmental Biology133 citations Open access
Semantic Scholar
The effect of flow on swimming bacteria controls the initial colonization of curved surfaces
E. Secchi, A. Vitale, G. Miño, V. Kantsler +3 more
2019bioRxiv128 citations Open access
Semantic Scholar
Chemotaxis shapes the microscale organization of the ocean’s microbiome
J. Raina, Bennett S. Lambert, D. Parks, C. Rinke +12 more
2022Nature125 citations
Semantic Scholar
A distinct growth physiology enhances bacterial growth under rapid nutrient fluctuations
Jen Nguyen, Vicente I. Fernandez, Sammy Pontrelli, U. Sauer +2 more
2020Nature Communications98 citations Open access
Semantic Scholar
Bacterial chemotaxis in a microfluidic T-maze reveals strong phenotypic heterogeneity in chemotactic sensitivity
M. Salek, F. Carrara, Vicente I. Fernandez, J. Guasto +1 more
2019Nature Communications97 citations Open access
Semantic Scholar
The structural role of bacterial eDNA in the formation of biofilm streamers
E. Secchi, Giovanni Savorana, A. Vitale, L. Eberl +2 more
2021bioRxiv95 citations Open access
Semantic Scholar
Chemotaxis under flow disorder shapes microbial dispersion in porous media
P. de Anna, A. Pahlavan, Y. Yawata, R. Stocker +1 more
2020Nature Physics93 citations
Semantic Scholar
Microbes contribute to setting the ocean carbon flux by altering the fate of sinking particulates
Trang T. H. Nguyen, E. Zakem, A. Ebrahimi, Julia A. Schwartzman +8 more
2022Nature Communications92 citations Open access
Semantic Scholar
Sinking enhances the degradation of organic particles by marine bacteria
Uria Alcolombri, François J. Peaudecerf, Vicente I. Fernandez, Lars Behrendt +2 more
2021Nature Geoscience90 citations Open access
Semantic Scholar
Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation
G. C. Wong, Jyot D. Antani, Pushkar P. Lele, J. Chen +38 more
2021Physical Biology85 citations Open access
Semantic Scholar
Bacterial Glycogen Provides Short-Term Benefits in Changing Environments
K. Sekar, Stephanie M. Linker, Jen Nguyen, Alix Grünhagen +2 more
2019Applied and Environmental Microbiology82 citations Open access
Semantic Scholar
Competition between growth and shear stress drives intermittency in preferential flow paths in porous medium biofilms
Dorothee L. Kurz, E. Secchi, Francisco Javier Agudelo Carrillo, I. Bourg +2 more
2022Proceedings of the National Academy of Sciences of the United States of America75 citations Open access
Semantic Scholar
Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions
K. Lee, Fátima C. Pereira, Márton Palatinszky, Lars Behrendt +4 more
2020Nature Protocols67 citations
Semantic Scholar
Bacteria push the limits of chemotactic precision to navigate dynamic chemical gradients
D. Brumley, F. Carrara, A. Hein, Y. Yawata +2 more
2019Proceedings of the National Academy of Sciences of the United States of America63 citations Open access
Semantic Scholar
Dual function of tropodithietic acid as antibiotic and signaling molecule in global gene regulation of the probiotic bacterium Phaeobacter inhibens
Paul G. Beyersmann, Jürgen Tomasch, K. Son, R. Stocker +4 more
2017Scientific Reports63 citations Open access
Semantic Scholar
A microfluidics-based in situ chemotaxis assay to study the behaviour of aquatic microbial communities
Bennett S. Lambert, J. Raina, Vicente I. Fernandez, C. Rinke +6 more
2017Nature Microbiology60 citations
Semantic Scholar
Synthesis and degradation of FtsZ quantitatively predict the first cell division in starved bacteria
K. Sekar, R. Rusconi, John T. Sauls, Tobias Fuhrer +8 more
2018Molecular Systems Biology57 citations Open access
Semantic Scholar
Chemotaxis increases metabolic exchanges between marine picophytoplankton and heterotrophic bacteria
J. Raina, Marco Giardina, D. Brumley, P. Clode +9 more
2023Nature Microbiology55 citations
Semantic Scholar
Single-cell stable isotope probing in microbial ecology
Uria Alcolombri, Roberto Pioli, R. Stocker, D. Berry
2022ISME Communications54 citations Open access
Semantic Scholar
Chain formation can enhance the vertical migration of phytoplankton through turbulence
Salvatore Lovecchio, E. Climent, R. Stocker, W. M. Durham
2019Science Advances51 citations Open access
Semantic Scholar
Biofilm disruption by an air bubble reveals heterogeneous age-dependent detachment patterns dictated by initial extracellular matrix distribution
H. Jang, R. Rusconi, R. Stocker
2017npj Biofilms and Microbiomes51 citations Open access
Semantic Scholar
Nutrient complexity triggers transitions between solitary and colonial growth in bacterial populations
Glen D'souza, Vanessa R Povolo, Johannes M. Keegstra, R. Stocker +1 more
2021The ISME Journal49 citations Open access
Semantic Scholar
Mechanistic model of nutrient uptake explains dichotomy between marine oligotrophic and copiotrophic bacteria
Noele Norris, N. Levine, Vicente I. Fernandez, R. Stocker
2020bioRxiv47 citations Open access
Semantic Scholar
Motility drives bacterial encounter with particles responsible for carbon export throughout the ocean
Bennett S. Lambert, Vicente I. Fernandez, R. Stocker
2019Limnology and Oceanography Letters41 citations Open access
Semantic Scholar
Morphogenesis of Biofilms in Porous Media and Control on Hydrodynamics.
Dorothee L. Kurz, E. Secchi, R. Stocker, J. Jiménez-Martínez
2023Environmental Science and Technology39 citations Open access
Semantic Scholar
Encounter rates between bacteria and small sinking particles
J. Słomka, Uria Alcolombri, E. Secchi, R. Stocker +1 more
2019New Journal of Physics39 citations Open access
Semantic Scholar
Interspecies interactions determine growth dynamics of biopolymer-degrading populations in microbial communities
Glen D'souza, Julia A. Schwartzman, Johannes M. Keegstra, J. Schreier +4 more
2023bioRxiv36 citations Open access
Semantic Scholar
Simultaneous visualization of flow fields and oxygen concentrations to unravel transport and metabolic processes in biological systems
S. Ahmerkamp, F. Jalaluddin, Yuan Cui, D. Brumley +6 more
2022Cell Reports Methods36 citations Open access
Semantic Scholar
PhenoChip: A single-cell phenomic platform for high-throughput photophysiological analyses of microalgae
Lars Behrendt, M. Salek, Erik C. L. Trampe, Vicente I. Fernandez +3 more
2020Science Advances36 citations Open access
Semantic Scholar
Constrained optimal foraging by marine bacterioplankton on particulate organic matter
Y. Yawata, F. Carrara, F. Menolascina, R. Stocker
2020Proceedings of the National Academy of Sciences of the United States of America35 citations Open access
Semantic Scholar
Controlled motility in the cyanobacterium Trichodesmium regulates aggregate architecture
U. Pfreundt, J. Słomka, G. Schneider, A. Sengupta +4 more
2023Science34 citations Open access
Semantic Scholar
Single-cell bacterial transcription measurements reveal the importance of dimethylsulfoniopropionate (DMSP) hotspots in ocean sulfur cycling
Cherry Gao, Vicente I. Fernandez, K. Lee, Simona Fenizia +4 more
2020Nature Communications33 citations Open access
Semantic Scholar
Deployable micro-traps to sequester motile bacteria
R. Di Giacomo, S. Krödel, B. Maresca, P. Benzoni +3 more
2017Scientific Reports32 citations Open access
Semantic Scholar
A Foraging Mandala for Aquatic Microorganisms
Vicente I. Fernandez, Y. Yawata, R. Stocker
2018The ISME Journal30 citations Open access
Semantic Scholar
Coral mucus rapidly induces chemokinesis and genome-wide transcriptional shifts toward early pathogenesis in a bacterial coral pathogen
Cherry Gao, M. Garren, K. Penn, Vicente I. Fernandez +4 more
2021The ISME Journal27 citations Open access
Semantic Scholar
Cell aggregation is associated with enzyme secretion strategies in marine polysaccharide-degrading bacteria
Glen D'souza, A. Ebrahimi, Astrid K. M. Stubbusch, Michael Daniels +4 more
2023The ISME Journal26 citations Open access
Semantic Scholar
Chemotaxis may assist marine heterotrophic bacterial diazotrophs to find microzones suitable for N2 fixation in the pelagic ocean
S. Hallstrøm, J. Raina, M. Ostrowski, D. Parks +5 more
2022The ISME Journal26 citations Open access
Semantic Scholar
Elongation enhances encounter rates between phytoplankton in turbulence
J. Arguedas-Leiva, J. Słomka, C. Lalescu, R. Stocker +1 more
2022Proceedings of the National Academy of Sciences of the United States of America25 citations Open access
Semantic Scholar
Bistability in oxidative stress response determines the migration behavior of phytoplankton in turbulence
F. Carrara, A. Sengupta, Lars Behrendt, A. Vardi +1 more
2020Proceedings of the National Academy of Sciences of the United States of America25 citations Open access
Semantic Scholar
Flagellar kinematics reveals the role of environment in shaping sperm motility
J. Guasto, Jonathan B Estrada, F. Menolascina, Lisa J. Burton +5 more
2020Journal of the Royal Society Interface23 citations Open access
Semantic Scholar

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Vicente I. Fernandez×16
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Vicente I. Fernandez — researcher profile on SciRah
J. Seymour×8
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J. Raina×8
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F. Carrara×8
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E. Secchi — researcher profile on SciRah

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K. Lee — researcher profile on SciRah

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Uria Alcolombri — researcher profile on SciRah

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D. Brumley — researcher profile on SciRah