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C. Amid · SciRah

Researcher profile · Semantic Scholar

C. Amid

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C. Amid — researcher profile on SciRah

h-index: 23
Works: 53
Citations: 6,026

Most-cited papers

A systematic survey of loss-of-function variants in human protein-coding genes
D. MacArthur, S. Balasubramanian, A. Frankish, N. Huang +47 more
2012Science1,247 citations Open access
Semantic Scholar
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
R. Hendriksen, P. Munk, P. Njage, B. V. van Bunnik +124 more
2019Nature Communications1,007 citations Open access
Semantic Scholar
MIPS: analysis and annotation of proteins from whole genomes in 2005
H. Mewes, C. Amid, R. Arnold, D. Frishman +8 more
2005Nucleic Acids Res.764 citations Open access
Semantic Scholar
Minimum Information about an Uncultivated Virus Genome (MIUViG)
S. Roux, E. Adriaenssens, B. Dutilh, E. Koonin +57 more
2018Nature Biotechnology689 citations Open access
Semantic Scholar
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes.
K. Pruitt, J. Harrow, R. Harte, Craig Wallin +45 more
2009Genome Research584 citations Open access
Semantic Scholar
Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones
T. Imanishi, T. Itoh, Yutaka Suzuki, C. O'Donovan +154 more
2004PLoS Biology349 citations Open access
Semantic Scholar
Structural and functional annotation of the porcine immunome
H. Dawson, J. Loveland, G. Pascal, J. Gilbert +46 more
2013BMC Genomics192 citations Open access
Semantic Scholar
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies
A. Mitchell, M. Scheremetjew, H. Denise, S. Potter +13 more
2017Nucleic Acids Res.191 citations Open access
Semantic Scholar
The European Nucleotide Archive in 2019
C. Amid, Blaise T. F. Alako, Vishnukumar Balavenkataraman Kadhirvelu, Tony Burdett +22 more
2019Nucleic Acids Res.102 citations Open access
Semantic Scholar
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition
A. Alberti, J. Poulain, S. Engelen, K. Labadie +44 more
2017Scientific Data93 citations Open access
Semantic Scholar
The European Nucleotide Archive in 2018
Peter W. Harrison, Blaise T. F. Alako, C. Amid, A. Cerdeño-Tárraga +20 more
2018Nucleic Acids Res.92 citations Open access
Semantic Scholar
Facing growth in the European Nucleotide Archive
G. Cochrane, Blaise T. F. Alako, C. Amid, Lawrence Bower +25 more
2012Nucleic Acids Res.86 citations Open access
Semantic Scholar
The European Nucleotide Archive in 2017
N. Silvester, Blaise T. F. Alako, C. Amid, A. Cerdeño-Tárraga +19 more
2017Nucleic Acids Res.84 citations Open access
Semantic Scholar
European Nucleotide Archive in 2016
A. Toribio, Blaise T. F. Alako, C. Amid, A. Cerdeño-Tárraga +20 more
2016Nucleic Acids Res.77 citations Open access
Semantic Scholar
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts
Chisato Yamasaki, K. Murakami, Yasuyuki Fujii, Yoshiharu Sato +134 more
2007Nucleic Acids Res.66 citations Open access
Semantic Scholar
The COMPARE Data Hubs
C. Amid, N. Pakseresht, N. Silvester, Suran Jayathilaka +33 more
2019bioRxiv52 citations Open access
Semantic Scholar
Content discovery and retrieval services at the European Nucleotide Archive
N. Silvester, Blaise T. F. Alako, C. Amid, A. Cerdeño-Tárraga +20 more
2014Nucleic Acids Res.43 citations Open access
Semantic Scholar
Assembly information services in the European Nucleotide Archive
N. Pakseresht, Blaise T. F. Alako, C. Amid, A. Cerdeño-Tárraga +26 more
2013Nucleic Acids Res.41 citations Open access
Semantic Scholar
Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome
C. Amid, Linda M Rehaume, K. L. Brown, James G. R. Gilbert +3 more
2009BMC Genomics41 citations Open access
Semantic Scholar
Major submissions tool developments at the European nucleotide archive
C. Amid, E. Birney, Lawrence Bower, A. Cerdeño-Tárraga +23 more
2011Nucleic Acids Res.40 citations Open access
Semantic Scholar
Biocuration of functional annotation at the European nucleotide archive
Richard Gibson, Blaise T. F. Alako, C. Amid, A. Cerdeño-Tárraga +17 more
2015Nucleic Acids Res.37 citations Open access
Semantic Scholar
Identification of mutations in SARS-CoV-2 PCR primer regions
A. Mentes, K. Papp, D. Visontai, J. Stéger +17 more
2022Scientific Reports25 citations Open access
Semantic Scholar
Molecular Evolution of the Globin Gene Cluster E in Two Distantly Related Midges, Chironomus pallidivittatus and C. thummi thummi
T. Hankeln, C. Amid, B. Weich, J. Niessing +1 more
1998Journal of Molecular Evolution23 citations
Semantic Scholar
Value, but high costs in post-deposition data curation
P. ten Hoopen, C. Amid, Pier Luigi Buttigieg, E. Pafilis +11 more
2016Database J. Biol. Databases Curation22 citations Open access
Semantic Scholar
Identifying causative mechanisms linking early-life stress to psycho-cardio-metabolic multi-morbidity: The EarlyCause project
N. Mariani, A. Borsini, C. Cecil, J. Felix +31 more
2020bioRxiv20 citations Open access
Semantic Scholar
MacArthur Protein-Coding Genes A Systematic Survey of Loss-of-Function Variants in Human
D. MacArthur, S. Balasubramanian, A. Frankish, N. Huang +47 more
201211 citations
Semantic Scholar
Systematic detection of co-infection and intra-host recombination in more than 2 million global SARS-CoV-2 samples
O. Pipek, Anna Medgyes-Horváth, J. Stéger, K. Papp +16 more
2024Nature Communications10 citations Open access
Semantic Scholar
Metagenomics-Based Proficiency Test of Smoked Salmon Spiked with a Mock Community
C. Sala, H. Mordhorst, Josephine Grützke, A. Brinkmann +20 more
2020Microorganisms10 citations Open access
Semantic Scholar
Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses
Nadim Rahman, Colman O'Cathail, Ahmad Zyoud, A. Sokolov +43 more
2023bioRxiv9 citations Open access
Semantic Scholar
Accelerating surveillance and research of antimicrobial resistance – an online repository for sharing of antimicrobial susceptibility data associated with whole genome sequences
S. Matamoros, R. Hendriksen, B. Pataki, N. Pakseresht +7 more
2019bioRxiv9 citations Open access
Semantic Scholar
Accelerating surveillance and research of antimicrobial resistance – an online repository for sharing of antimicrobial susceptibility data associated with whole-genome sequences
S. Matamoros, R. Hendriksen, B. Pataki, N. Pakseresht +9 more
2020Microbial Genomics4 citations Open access
Semantic Scholar
Minimum Information about an Uncultivated Virus Genome ( MIUViG ) : a community consensus on standards and best practices for describing genome sequences from uncultivated viruses
Simon Roux, E. Adriaenssens, B. Dutilh, E. Koonin +45 more
20183 citations
Semantic Scholar
Beyond the Genome: genomics research ten years after the human genome sequence
A. Casto, C. Amid
2010Genome Biology3 citations Open access
Semantic Scholar
A Call for Action: Lessons Learned From a Pilot to Share a Complex, Linked COVID-19 Cohort Dataset for Open Science
C. Amid, Martine Y. van Roode, G. Rinck, Janko van Beek +9 more
2025JMIR Public Health and Surveillance2 citations Open access
Semantic Scholar
Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak
M. Poen, A. Pohlmann, C. Amid, T. Bestebroer +9 more
2020PLoS ONE2 citations Open access
Semantic Scholar
Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition v1
Adriana Not Provided Alberti, J. Poulain, S. Engelen, K. Labadie +45 more
2018protocols.io2 citations Open access
Semantic Scholar
European Nucleotide Archive: Quick tour
C. Amid
20172 citations Open access
Semantic Scholar
Handling of genomics samples
A. Alberti, J. Poulain, S. Engelen, K. Labadie +45 more
20201 citations Open access
Semantic Scholar
From identification to validation to gene count
C. Amid, A. Frankish, B. Aken, I. Ezkurdia +11 more
2010Genome Biology1 citations Open access
Semantic Scholar
Peer Review #1 of "Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils (v0.2)"
G. Trubl, S. Roux, N. Solonenko, Yueh-Fen Li +356 more
20190 citations Open access
Semantic Scholar
DNA and RNA backups v1
Adriana Not Provided Alberti, J. Poulain, S. Engelen, K. Labadie +45 more
2018protocols.io0 citations Open access
Semantic Scholar
Sequencing library preparation v1
Adriana Not Provided Alberti, J. Poulain, S. Engelen, K. Labadie +45 more
2018protocols.io0 citations Open access
Semantic Scholar
Sequencing and data quality control v1
Adriana Not Provided Alberti, J. Poulain, S. Engelen, K. Labadie +45 more
2018protocols.io0 citations Open access
Semantic Scholar
18S and 16S rRNA genes amplicon generation for eukaryotic and prokaryotic metabarcoding v1
Adriana Not Provided Alberti, J. Poulain, S. Engelen, K. Labadie +45 more
2018protocols.io0 citations Open access
Semantic Scholar
Handling of genomics samples v1
Adriana Not Provided Alberti, J. Poulain, S. Engelen, K. Labadie +45 more
2018protocols.io0 citations Open access
Semantic Scholar
Nucleic acids preparations v1
Adriana Not Provided Alberti, J. Poulain, S. Engelen, K. Labadie +45 more
2018protocols.io0 citations Open access
Semantic Scholar
What is the European Nucleotide Archive ?
C. Amid
20170 citations
Semantic Scholar
European Nucleotide Archive : Quick tour European Nucleotide Archive : Quick tour
C. Amid
20160 citations
Semantic Scholar
Sustainable biocuration of functional annotation at the European Nucleotide Archive
Richard Gibson, C. Amid, A. Cerdeño-Tárraga, P. ten Hoopen +17 more
20160 citations Open access
Semantic Scholar
MacArthur Protein-Coding Genes A Systematic Survey of Loss-of-Function Variants in Human
D. MacArthur, S. Balasubramanian, A. Frankish, N. Huang +47 more
20120 citations
Semantic Scholar

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