Researcher profile · Semantic Scholar

R. Henkel

h-index: 11
Works: 46
Citations: 582

Most-cited papers

SBML Level 3: an extensible format for the exchange and reuse of biological models
Sarah M. Keating, D. Waltemath, Matthias König, Feng-Kai Zhang +137 more
2020Molecular Systems Biology269 citations Open access
Semantic Scholar
Combining computational models, semantic annotations and simulation experiments in a graph database
R. Henkel, O. Wolkenhauer, Dagmar Waltemath
2015Database J. Biol. Databases Curation52 citations Open access
Semantic Scholar
Ranked retrieval of Computational Biology models
R. Henkel, L. Endler, Andre Peters, N. Le Novère +1 more
2010BMC Bioinformatics39 citations Open access
Semantic Scholar
Improving the reuse of computational models through version control
Dagmar Waltemath, R. Henkel, Robert Hälke, Martin Scharm +1 more
2013Bioinform.32 citations Open access
Semantic Scholar
Notions of similarity for systems biology models
R. Henkel, R. Hoehndorf, T. Kacprowski, C. Knüpfer +2 more
2016Briefings Bioinform.26 citations Open access
Semantic Scholar
STON: exploring biological pathways using the SBGN standard and graph databases
Vasundra Touré, A. Mazein, Dagmar Waltemath, Irina Balaur +4 more
2016BMC Bioinformatics24 citations Open access
Semantic Scholar
Annotation-based feature extraction from sets of SBML models
Rebekka Alm, Dagmar Waltemath, M. Wolfien, O. Wolkenhauer +1 more
2015Journal of Biomedical Semantics22 citations Open access
Semantic Scholar
Graph databases in systems biology: a systematic review
Ilya Mazein, Adrien Rougny, A. Mazein, R. Henkel +9 more
2024Briefings Bioinform.16 citations Open access
Semantic Scholar
CovidGraph: a graph to fight COVID-19
L. Gütebier, T. Bleimehl, R. Henkel, J. Munro +12 more
2022Bioinform.13 citations Open access
Semantic Scholar
Considerations of graph-based concepts to manage of computational biology models and associated simulations
R. Henkel, N. Le Novère, O. Wolkenhauer, Dagmar Waltemath
2012GI-Jahrestagung13 citations
Semantic Scholar
Reproducibility of Model-Based Results in Systems Biology
Dagmar Waltemath, R. Henkel, Felix Winter, O. Wolkenhauer
201311 citations
Semantic Scholar
Identifying frequent patterns in biochemical reaction networks: a workflow
Fabienne Lambusch, Dagmar Waltemath, O. Wolkenhauer, K. Sandkuhl +2 more
2018PeerJ Preprints10 citations Open access
Semantic Scholar
Information Retrieval in Life Sciences: A Programmatic Survey
Matthias Lange, R. Henkel, Wolfgang Mueller, Dagmar Waltemath +1 more
2014Approaches in Integrative Bioinformatics10 citations
Semantic Scholar
Towards Enhanced Retrieval of Biological Models through Annotation-Based Ranking
Dagmar Köhn, Carsten Maus, R. Henkel, Martin Kolbe
2009Data Integration in the Life Sciences7 citations
Semantic Scholar
Combining computational models, semantic annotations, and associated simulation experiments in a graph database
R. Henkel, O. Wolkenhauer, D. Walthemath
20146 citations Open access
Semantic Scholar
Sex and Gender Differences in Chronic Kidney Disease—Explained by the Brenner–Luyckx Concept of Hyperfiltration
S. Stracke, Jonas Wille, A. Smolka, R. Henkel +8 more
2026Journal of Clinical Medicine5 citations Open access
Semantic Scholar
Das Sombi-Framework zum Ermitteln geeigneter Suchfunktionen für biologische Modelldatenbasen
Dagmar Waltemath, R. Henkel, H. Meyer, A. Heuer
2011Datenbank-Spektrum5 citations
Semantic Scholar
TAPP: Defining standard provenance information for clinical research data and workflows - Obstacles and opportunities
Kerstin Gierend, J. Wodke, Sascha Genehr, Robert Gött +8 more
2023The Web Conference4 citations Open access
Semantic Scholar
COVIDGraph: Connecting Biomedical COVID-19 Resources and Computational Biology Models
L. Gütebier, R. Henkel, A. Jarasch, T. Bleimehl +5 more
2021SEA-Data@VLDB4 citations
Semantic Scholar
SBML Level 3 Package Proposal: Annotation
M. Hucka, C. Laibe, N. Juty, Wolfram Liebermeister +14 more
20114 citations Open access
Semantic Scholar
MeDaX: A Knowledge Graph on FHIR
Ilya Mazein, Tom Gebhardt, Lea Michaelis, Dagmar Waltemath +1 more
2024Medical Informatics Europe3 citations Open access
Semantic Scholar
Notions of similarity for computational biology models
R. Henkel, R. Hoehndorf, T. Kacprowski, C. Knüpfer +2 more
2016bioRxiv2 citations Open access
Semantic Scholar
mdm2neo4j: Generating Graph Representations of Medical Data Models
L. Gütebier, Benjamin Winter, M. Blumenstock, Christian Niklas +3 more
2025Medical Informatics Europe1 citations Open access
Semantic Scholar
The MeDaX Knowledge Graph Prototype
J. Wodke, Lea Michaelis, R. Henkel
2023Medical Informatics Europe1 citations Open access
Semantic Scholar
Exploring New Possibilities for Research Data Exploration Using the Example of the German Core Data Set
Felix Menzel, Dagmar Waltemath, R. Henkel
2023Medical Informatics Europe1 citations Open access
Semantic Scholar
Finding patterns in biochemical reaction networks
R. Henkel, Fabienne Lambusch, O. Wolkenhauer, K. Sandkuhl +2 more
2016PeerJ Preprints1 citations Open access
Semantic Scholar
Finding pattern in biochemical reaction networks - a sub-graph mining approach
R. Henkel, Fabienne Lambusch, Dagmar Waltemath
2015PeerJ Preprints1 citations Open access
Semantic Scholar
Towards Classifying Reactions of SBML-Models
Fabienne Lambusch, Christian Rosenke, R. Henkel
20151 citations
Semantic Scholar
MaSyMoS: Finding Hidden Treasures in Model Repositories
R. Henkel, Dagmar Waltemath
2014Workshop on Semantic Web Applications and Tools for Life Sciences1 citations
Semantic Scholar
FAIR Data Workflow Implementation and Assessment for Ion-Exchange Chromatography in Plasma Science
R. Wagner, R. Henkel, Markus M. Becker, Kristina Yordanova +1 more
2026Data Science Journal0 citations Open access
Semantic Scholar
Calibrating CONSORT-AI with FAIR Principles to enhance reproducibility in AI-driven clinical trials
K. Shiferaw, Irina Balaur, Gary S. Collins, C. Sharma +6 more
2025medRxiv0 citations Open access
Semantic Scholar
Enhanced Health Study Discoverability: Graph-Based Analysis Approach
L. Gütebier, Stefan Gross, Benjamin Winter, M. Blumenstock +4 more
2025JMIR Medical Informatics0 citations Open access
Semantic Scholar
A Knowledge Graph for Enhanced Study Discovery and Semantic Exploration
L. Gütebier, Dagmar Waltemath, R. Henkel
2025SWAT4HCLS0 citations
Semantic Scholar
Demonstrating Study Discovery and Exploration Through a Knowledge Graph
L. Gütebier, Dagmar Waltemath, R. Henkel
2025SWAT4HCLS0 citations
Semantic Scholar
Demonstration: The MeDaX-KG on FHIR
Ilya Mazein, Tom Gebhardt, Sebastian Berthe, Kai Fitzer +7 more
2025SWAT4HCLS0 citations
Semantic Scholar
MeDaX Prototype v0.2
Ilya Mazein, Sarah Braun, Tom Gebhardt, R. Henkel +3 more
2024SWAT4HCLS0 citations
Semantic Scholar
MeDaX project plan: How to sustainably improve biomedical (research) data management
J. Wodke, R. Henkel, Dagmar Waltemath
2023SWAT4HCLS0 citations
Semantic Scholar
Exploring Use Cases for CovidGraph
L. Gütebier, R. Henkel, Christian Niklas, Dagmar Waltemath
2023Medical Informatics Europe0 citations Open access
Semantic Scholar
Contributions to the reuse and reproducibility of computational biology models
R. Henkel, Dagmar Waltemath
2023SWAT4HCLS0 citations
Semantic Scholar
Contributions to the reuse and reproducibility of computational biology models
R. Henkel
20220 citations
Semantic Scholar
CovidGraph: Integrating COVID-19 Data
R. Henkel, Lea Guetebier, Dagmar Waltemath
2022Medical Informatics Europe0 citations Open access
Semantic Scholar
Biomedical Repositories for Simulation Studies
R. Henkel
20210 citations Open access
Semantic Scholar
Annotation-Based Feature Extraction from Sets of SBML Models
Rebekka Alm, Dagmar Waltemath, Olaf Wolkenauer, R. Henkel
2014Data Integration in the Life Sciences0 citations
Semantic Scholar
Managing Bio-Models: Model Storage, Retrieval, Ranking and Versioning
R. Henkel, Dagmar Waltemath, O. Wolkenhauer
20110 citations Open access
Semantic Scholar
Searching BioModels Database
R. Henkel, Dagmar Waltemath, Andre Peters, L. Endler +1 more
20100 citations Open access
Semantic Scholar
Distributed Information Retrieval of Computational Biological Models.
R. Henkel
20100 citations
Semantic Scholar

D. Waltemath

×4

Wolfram Liebermeister×4

Ilya Mazein×4

Lea Michaelis×4

Fabienne Lambusch×4

L. Endler×3

C. Knüpfer×3

N. Le Novère×3