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T. Nakane · SciRah

Researcher profile · Semantic Scholar

T. Nakane

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T. Nakane — researcher profile on SciRah

h-index: 41
Works: 143
Citations: 13K

Most-cited papers

New tools for automated high-resolution cryo-EM structure determination in RELION-3
J. Zivanov, T. Nakane, B. Forsberg, D. Kimanius +3 more
2018eLife4,316 citations Open access
Semantic Scholar
Structures and distributions of SARS-CoV-2 spike proteins on intact virions
Zun-Long Ke, J. Otón, K. Qu, M. Cortese +13 more
2020Nature1,067 citations Open access
Semantic Scholar
A Bayesian approach to beam-induced motion correction in cryo-EM single-particle analysis
J. Zivanov, T. Nakane, S. Scheres
2018bioRxiv836 citations Open access
Semantic Scholar
Single-particle cryo-EM at atomic resolution
T. Nakane, A. Kotecha, A. Sente, G. McMullan +20 more
2020Nature734 citations Open access
Semantic Scholar
Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in RELION-3.1
J. Zivanov, T. Nakane, S. Scheres
2019bioRxiv661 citations Open access
Semantic Scholar
Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL
M. Suga, F. Akita, M. Sugahara, M. Kubo +34 more
2017Nature538 citations Open access
Semantic Scholar
Characterisation of molecular motions in cryo-EM single-particle data by multi-body refinement in RELION
T. Nakane, D. Kimanius, E. Lindahl, S. Scheres
2018bioRxiv436 citations Open access
Semantic Scholar
Crystal Structure of the Minimal Cas9 from Campylobacter jejuni Reveals the Molecular Diversity in the CRISPR-Cas9 Systems.
Mari Yamada, Yuto Watanabe, J. Gootenberg, H. Hirano +6 more
2017Molecules and Cells158 citations Open access
Semantic Scholar
Cryo-EM structure of the human L-type amino acid transporter 1 in complex with glycoprotein CD98hc
Yong-Chan Lee, Pattama Wiriyasermkul, C. Jin, Lili Quan +13 more
2019Nature Structural & Molecular Biology153 citations Open access
Semantic Scholar
Cryo-EM structures of the human volume-regulated anion channel LRRC8
G. Kasuya, T. Nakane, T. Yokoyama, Yanyan Jia +15 more
2018Nature Structural & Molecular Biology119 citations Open access
Semantic Scholar
Ligand binding to human prostaglandin E receptor EP4 at the lipid-bilayer interface
Yosuke Toyoda, Kazushi Morimoto, Ryoji Suno, S. Horita +29 more
2018Nature Chemical Biology113 citations
Semantic Scholar
RELION-3: new tools for automated high-resolution cryo-EM structure determination
J. Zivanov, T. Nakane, B. Forsberg, D. Kimanius +3 more
2018bioRxiv99 citations Open access
Semantic Scholar
Cryo-EM structures of holo condensin reveal a subunit flip-flop mechanism
Byung-Gil Lee, F. Merkel, Matteo Allegretti, M. Hassler +13 more
2020Nature Structural & Molecular Biology97 citations Open access
Semantic Scholar
Structure of the dopamine D2 receptor in complex with the antipsychotic drug spiperone
D. Im, A. Inoue, T. Fujiwara, T. Nakane +15 more
2020Nature Communications87 citations Open access
Semantic Scholar
Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate
T. Tosha, T. Nomura, T. Nishida, N. Saeki +31 more
2017Nature Communications85 citations Open access
Semantic Scholar
Structural basis for xenobiotic extrusion by eukaryotic MATE transporter
H. Miyauchi, Satomi Moriyama, T. Kusakizako, K. Kumazaki +10 more
2017Nature Communications84 citations Open access
Semantic Scholar
Structural insights into the competitive inhibition of the ATP-gated P2X receptor channel
G. Kasuya, Toshiaki Yamaura, Xiao-Bo Ma, R. Nakamura +10 more
2017Nature Communications81 citations Open access
Semantic Scholar
Data processing pipeline for serial femtosecond crystallography at SACLA
T. Nakane, Y. Joti, K. Tono, M. Yabashi +4 more
2016Journal of Applied Crystallography81 citations Open access
Semantic Scholar
Hydroxyethyl cellulose matrix applied to serial crystallography
M. Sugahara, T. Nakane, T. Masuda, Mamoru Suzuki +15 more
2017Scientific Reports76 citations Open access
Semantic Scholar
XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction
J. Thomaston, R. Woldeyes, T. Nakane, Ayumi Yamashita +22 more
2017Proceedings of the National Academy of Sciences of the United States of America69 citations Open access
Semantic Scholar
Crystal Structures of Human Orexin 2 Receptor Bound to the Subtype-Selective Antagonist EMPA.
Ryoji Suno, K. Kimura, T. Nakane, K. Yamashita +20 more
2018Structure65 citations Open access
Semantic Scholar
Toward G protein-coupled receptor structure-based drug design using X-ray lasers
A. Ishchenko, B. Stauch, G. Han, A. Batyuk +14 more
2019IUCrJ58 citations Open access
Semantic Scholar
Crystal structure of plant vacuolar iron transporter VIT1
T. Kato, K. Kumazaki, M. Wada, R. Taniguchi +7 more
2019Nature Plants56 citations
Semantic Scholar
Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin
K. Oda, T. Nomura, T. Nakane, K. Yamashita +44 more
2021eLife51 citations Open access
Semantic Scholar
The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography
P. Edlund, H. Takala, Elin Claesson, L. Henry +32 more
2016Scientific Reports51 citations Open access
Semantic Scholar
Multi-body Refinement of Cryo-EM Images in RELION.
T. Nakane, S. Scheres
2020Methods in molecular biology48 citations
Semantic Scholar
CryoTEM with a Cold Field Emission Gun That Moves Structural Biology into a New Stage
Takayuki Kato, F. Makino, T. Nakane, N. Terahara +6 more
2019Microscopy and Microanalysis42 citations Open access
Semantic Scholar
High-viscosity sample-injection device for serial femtosecond crystallography at atmospheric pressure
Yoshiaki Shimazu, K. Tono, Tomoyuki Tanaka, Y. Yamanaka +11 more
2019Journal of Applied Crystallography39 citations Open access
Semantic Scholar
Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome
N. Woitowich, A. Halavaty, P. Waltz, C. Kupitz +37 more
2018IUCrJ38 citations Open access
Semantic Scholar
Structures, conformations and distributions of SARS-CoV-2 spike protein trimers on intact virions
Zun-Long Ke, J. Otón, K. Qu, M. Cortese +12 more
2020bioRxiv36 citations Open access
Semantic Scholar
Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals
A. Wolff, I. Young, R. Sierra, A. Brewster +34 more
2019bioRxiv34 citations Open access
Semantic Scholar
Serial femtosecond crystallography structure of cytochrome c oxidase at room temperature
R. Andersson, C. Safari, R. Dods, E. Nango +12 more
2017Scientific Reports34 citations Open access
Semantic Scholar
Atomic resolution structure of serine protease proteinase K at ambient temperature
T. Masuda, Mamoru Suzuki, S. Inoue, Chang-Yong Song +13 more
2017Scientific Reports29 citations Open access
Semantic Scholar
Serial femtosecond crystallography at the SACLA: breakthrough to dynamic structural biology
E. Mizohata, T. Nakane, Y. Fukuda, E. Nango +1 more
2018Biophysical Reviews26 citations Open access
Semantic Scholar
Exploiting prior knowledge about biological macromolecules in cryo-EM structure determination
D. Kimanius, Gustav Zickert, T. Nakane, J. Adler +4 more
2020bioRxiv25 citations Open access
Semantic Scholar
A tool for visualizing protein motions in time-resolved crystallography
Cecilia Wickstrand, G. Katona, T. Nakane, P. Nogly +3 more
2020Structural Dynamics25 citations Open access
Semantic Scholar
Crystal structures of the TRIC trimeric intracellular cation channel orthologues
G. Kasuya, M. Hiraizumi, A. Maturana, K. Kumazaki +17 more
2016Cell Research25 citations Open access
Semantic Scholar
Capturing structural changes of the S1 to S2 transition of photosystem II using time-resolved serial femtosecond crystallography
Hongjie Li, Y. Nakajima, T. Nomura, M. Sugahara +21 more
2021IUCrJ24 citations Open access
Semantic Scholar
Isoprenoid-chained lipid EROCOC17+4: a new matrix for membrane protein crystallization and a crystal delivery medium in serial femtosecond crystallography
K. Ihara, M. Hato, T. Nakane, K. Yamashita +13 more
2020Scientific Reports24 citations Open access
Semantic Scholar
Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography
K. Yamashita, N. Kuwabara, T. Nakane, T. Murai +25 more
2017IUCrJ22 citations Open access
Semantic Scholar
Nanosecond pump–probe device for time-resolved serial femtosecond crystallography developed at SACLA
M. Kubo, E. Nango, K. Tono, Tetsunari Kimura +19 more
2017Journal of Synchrotron Radiation22 citations Open access
Semantic Scholar
Coincidence timing of femtosecond optical pulses in an X-ray free electron laser
Á. Sánchez-González, Allan S. Johnson, A. Fitzpatrick, C. Hutchison +12 more
201717 citations Open access
Semantic Scholar
Conformational alterations in unidirectional ion transport of a light-driven chloride pump revealed using X-ray free electron lasers
T. Hosaka, T. Nomura, M. Kubo, T. Nakane +25 more
2022Proceedings of the National Academy of Sciences of the United States of America15 citations Open access
Semantic Scholar
X-ray Free Electron Laser Determination of Crystal Structures of Dark and Light States of a Reversibly Photoswitching Fluorescent Protein at Room Temperature
C. Hutchison, Violeta Cordón-Preciado, R. M. Morgan, T. Nakane +16 more
2017International Journal of Molecular Sciences15 citations Open access
Semantic Scholar
Microcrystal Electron Diffraction (MicroED) Structure Determination of a Mechanochemically Synthesized Co-crystal not Affordable from Solution Crystallization
T. Sasaki, T. Nakane, A. Kawamoto, T. Nishizawa +1 more
2023CrysteEngComm9 citations Open access
Semantic Scholar
Heavy Atom Detergent/Lipid Combined X-ray Crystallography for Elucidating the Structure-Function Relationships of Membrane Proteins
S. Hanashima, T. Nakane, E. Mizohata
2021Membranes6 citations Open access
Semantic Scholar
Crystal structure of the Agrobacterium tumefaciens type VI effector–immunity complex
S. Fukuhara, T. Nakane, K. Yamashita, R. Ishii +2 more
2018Acta Crystallographica Section F Structural Biology Communications5 citations Open access
Semantic Scholar
Improvement of Production and Isolation of Human Neuraminidase-1 in Cellulo Crystals.
K. Koiwai, Jun Tsukimoto, T. Higashi, F. Mafuné +21 more
2019ACS Applied Bio Materials4 citations Open access
Semantic Scholar
Author response: New tools for automated high-resolution cryo-EM structure determination in RELION-3
J. Zivanov, T. Nakane, B. Forsberg, D. Kimanius +3 more
20184 citations Open access
Semantic Scholar
XFEL structures of the influenza M2 proton channel at 1.4 Å: room-temperature water networks and insights into proton conduction
J. Thomaston, R. Woldeyes, T. Nakane, K. Koiwai +13 more
20172 citations
Semantic Scholar

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E. Nango×24
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M. Sugahara×14

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K. Yamashita×11

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