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H. Ebhardt · SciRah

Researcher profile · Semantic Scholar

H. Ebhardt

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H. Ebhardt — researcher profile on SciRah

h-index: 18
Works: 48
Citations: 3,102

Most-cited papers

Genome sequence of Halobacterium species NRC-1.
Wailap Victor Ng, Sean P. Kennedy, Gregory G. Mahairas, Brian R. Berquist +39 more
2000Proceedings of the National Academy of Sciences of the United States of America718 citations Open access
Semantic Scholar
A repository of assays to quantify 10,000 human proteins by SWATH-MS
George A. Rosenberger, C. Koh, T. Guo, H. Röst +18 more
2014Scientific Data403 citations Open access
Semantic Scholar
Homologs of small nucleolar RNAs in Archaea.
A. Omer, T. Lowe, A. G. Russell, H. Ebhardt +2 more
2000Science364 citations
Semantic Scholar
Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa.
Ryan D. Morin, Gozde Aksay, E. Dolgosheina, H. Ebhardt +4 more
2008Genome Research309 citations Open access
Semantic Scholar
Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications
H. Ebhardt, Herbert H. Tsang, D. C. Dai, Yifeng Liu +2 more
2009Nucleic Acids Research207 citations Open access
Semantic Scholar
In vitro reconstitution and activity of a C/D box methylation guide ribonucleoprotein complex
A. Omer, Sonia M. Ziesche, H. Ebhardt, P. Dennis
2002Proceedings of the National Academy of Sciences of the United States of America203 citations Open access
Semantic Scholar
Applications of targeted proteomics in systems biology and translational medicine
H. Ebhardt, Alex Root, C. Sander, R. Aebersold
2015Proteomics167 citations Open access
Semantic Scholar
Extensive 3' modification of plant small RNAs is modulated by helper component-proteinase expression.
H. Ebhardt, Emily P. Thi, Ming‐Bo Wang, P. Unrau
2005Proceedings of the National Academy of Sciences of the United States of America163 citations Open access
Semantic Scholar
Breast Cancer Classification Based on Proteotypes Obtained by SWATH Mass Spectrometry
P. Bouchal, Olga T. Schubert, J. Faktor, Lenka Capkova +9 more
2019bioRxiv78 citations Open access
Semantic Scholar
Naturally occurring variations in sequence length creates microRNA isoforms that differ in argonaute effector complex specificity
H. Ebhardt, Amber Fedynak, Richard P. Fahlman
2010Silence67 citations Open access
Semantic Scholar
Platelet-Derived Microparticles From Obese Individuals: Characterization of Number, Size, Proteomics, and Crosstalk With Cancer and Endothelial Cells
Rosalia Grande, M. Dovizio, S. Marcone, P. Szklanna +10 more
2019Frontiers in Pharmacology56 citations Open access
Semantic Scholar
Comprehensive proteome analysis of human skeletal muscle in cachexia and sarcopenia: a pilot study
H. Ebhardt, Simone Degen, Valentina Tadini, Alain Schilb +5 more
2017Journal of Cachexia, Sarcopenia and Muscle53 citations Open access
Semantic Scholar
Proteome-wide association studies identify biochemical modules associated with a wing-size phenotype in Drosophila melanogaster
H. Okada, H. Ebhardt, Sibylle C. Vonesch, Ruedi Aebersold +1 more
2016Nature Communications49 citations Open access
Semantic Scholar
Range of protein detection by selected/multiple reaction monitoring mass spectrometry in an unfractionated human cell culture lysate
H. Ebhardt, E. Sabidó, Ruth Hüttenhain, Ben C. Collins +1 more
2012Proteomics38 citations Open access
Semantic Scholar
Correlations of microRNA:microRNA expression patterns reveal insights into microRNA clusters and global microRNA expression patterns.
Steven G. Chaulk, H. Ebhardt, R. Fahlman
2016Molecular Biosystems25 citations
Semantic Scholar
Substrate requirements for a novel archaeal endonuclease that cleaves within the 5' external transcribed spacer of Sulfolobus acidocaldarius precursor rRNA.
A. G. Russell, H. Ebhardt, Patrick P. Dennis
1999Genetics21 citations
Semantic Scholar
SWATH-MS Analysis of FFPE Tissues Identifies Stathmin as a Potential Marker of Endometrial Cancer in Patients Exposed to Tamoxifen.
Lucia Janacova, J. Faktor, Lenka Capkova, Vendula Páralová +7 more
2020Journal of Proteome Research20 citations Open access
Semantic Scholar
Selected reaction monitoring mass spectrometry: a methodology overview.
H. Ebhardt
2014Methods in molecular biology20 citations
Semantic Scholar
Differences in the bovine milk whey proteome between early pregnancy and the estrous cycle.
D. Johnston, I. Malo Estepa, H. Ebhardt, M. Crowe +1 more
2018Theriogenology17 citations Open access
Semantic Scholar
Systems pharmacology using mass spectrometry identifies critical response nodes in prostate cancer
H. Ebhardt, Alex Root, Yan-Sheng Liu, N. Gauthier +2 more
2018npj Systems Biology and Applications14 citations Open access
Semantic Scholar
An alternative mechanism for the catalysis of peptide bond formation by L/F transferase: substrate binding and orientation.
Angela W. S. Fung, H. Ebhardt, Heshani Abeysundara, Jack Moore +2 more
2011Journal of Molecular Biology14 citations
Semantic Scholar
RNA Secondary Structure Prediction Via Energy Density Minimization
C. Alkan, E. Karakoç, S. Sahinalp, P. Unrau +3 more
2006Annual International Conference on Research in Computational Molecular Biology13 citations
Semantic Scholar
Quantification of ErbB network proteins in three cell types using complementary approaches identifies cell-general and cell-type-specific signaling proteins.
C. Kiel, H. Ebhardt, J. Burnier, C. Portugal +4 more
2014Journal of Proteome Research11 citations Open access
Semantic Scholar
Quantification of the post-translational addition of amino acids to proteins by MALDI-TOF mass spectrometry.
H. Ebhardt, Zhizhong Xu, Angela W. S. Fung, R. Fahlman
2009Analytical Chemistry11 citations
Semantic Scholar
Characterizing multiple exogenous and endogenous small RNA populations in parallel with subfemtomolar sensitivity using a streptavidin gel-shift assay.
H. Ebhardt, P. Unrau
2009RNA: A publication of the RNA Society10 citations Open access
Semantic Scholar
Structure-based assessment and network analysis of targeting 14-3-3 proteins in prostate cancer
Alex Root, A. Beizaei, H. Ebhardt
2018Molecular Cancer9 citations Open access
Semantic Scholar
Reduction of multiple reaction monitoring protein target list using correlation analysis.
H. Ebhardt, P. Ponchon, K. Theodosiadis, Christophe Fuerer +4 more
2022Journal of Dairy Science7 citations Open access
Semantic Scholar
Enzymatic generation of peptides flanked by basic amino acids to obtain MS/MS spectra with 2× sequence coverage
H. Ebhardt, J. Nan, Steven G. Chaulk, R. Fahlman +1 more
2014Rapid Communications in Mass Spectrometry7 citations Open access
Semantic Scholar
A robust multiplex immunoaffinity mass spectrometry assay (PromarkerD) for clinical prediction of diabetic kidney disease
Scott D Bringans, Jason Ito, Tammy M. Casey, Sarah Thomas +6 more
2020Clinical Proteomics5 citations Open access
Semantic Scholar
Ebbie: automated analysis and storage of small RNA cloning data using a dynamic web server
H. Ebhardt, K. Wiese, Peter J. Unrau
2006BMC Bioinformatics5 citations Open access
Semantic Scholar
Development of a RP-HPLC-UV method for polyamine quantification in an infant formula matrix
Niamh Gowen, Aikaterini Galani, H. Ebhardt, J. O'Regan +2 more
2024Journal of Food Composition and Analysis4 citations Open access
Semantic Scholar
RNA interference (RNAi) patents and human health related applications of RNAi.
H. Ebhardt
2007Recent Patents on DNA & Gene Sequences4 citations
Semantic Scholar
Probing the leucyl/phenylalanyl tRNA protein transferase active site with tRNA substrate analogues.
Angela W. S. Fung, H. Ebhardt, K. Krishnakumar, Jack Moore +3 more
2014Protein Peptide Letters3 citations
Semantic Scholar
Applying Arginylation for Bottom-Up Proteomics.
H. Ebhardt
2015Methods in molecular biology2 citations
Semantic Scholar
CIG-P: Circular Interaction Graph for Proteomics
Christopher K. Hobbs, Michelle M. Leung, Herbert H. Tsang, H. Ebhardt
2014BMC Bioinformatics2 citations Open access
Semantic Scholar
A two‐drug combination simulation study for metastatic castrate resistant prostate cancer
Alex Root, H. Ebhardt
2018The Prostate1 citations Open access
Semantic Scholar
Isolation and biochemical analysis of plant small RNAs.
H. Ebhardt, M. O. Ovando, P. Unrau
2012Methods in molecular biology1 citations
Semantic Scholar
CX3CR1 positive myeloid cells differentially regulate atherosclerotic vascular smooth muscle contraction by plc dependent activation of transient receptor potential cation (TRPC) channels
Arun Kumar, R. Mcgeogh, H. Cassidy, H. Ebhardt +1 more
20200 citations
Semantic Scholar
A robust multiplex immunoaffinity mass spectrometry assay (PromarkerD) for clinical prediction of diabetic kidney disease
Scott D Bringans, Jason Ito, Tammy M. Casey, Sarah Thomas +6 more
2020Clinical Proteomics0 citations Open access
Semantic Scholar
SWATH-MS identifikácia calcyphosinu a stathminu-1 ako markerov agresivity nádorov endometria s odlišnou špecifitou
Lucia Janáčová, Jakub Faktor, Lenka Capkova, A. Pospíšilová +5 more
20190 citations
Semantic Scholar
P3772CX3CR1 positive myeloid cells regulate vascular smooth muscle contraction by PLC dependent activation of transient receptor potential cation (TRPC) channels
A. Kumar, R. Mcgeogh, H. Cassidy, A. Beizaei +1 more
20180 citations Open access
Semantic Scholar
Klasifikace nádorů prsu na základě proteotypů získaných metodou SWATH-MS
Pavel Bouchal, Olga T. Schubert, Jakub Faktor, Lenka Čápková +7 more
20170 citations
Semantic Scholar
Systems pharmacology and quantitative proteomics for developing targeted triple therapy
H. Ebhardt, Alex Root, A. Beizaei, Y. Liu +3 more
20170 citations
Semantic Scholar
Breast cancer classification based on proteotypes obtained by SWATH-MS
P. Bouchal, Olga T. Schubert, J. Faktor, Lenka Capkova +7 more
20170 citations
Semantic Scholar
Comprehensive proteome analysis of skeletal muscle in cachexia and age-related sarcopenia: a pilot comparison of in vivo and in vitro models a
H. Ebhardt, Simone Degen, Valentina Tadini, Alain Schilb +5 more
20170 citations
Semantic Scholar
Comprehensive proteome analysis of muscle composition and development in seniors
H. Ebhardt, Simone Degen, Valentina Tadini, Alain Schilb +4 more
20170 citations
Semantic Scholar
Post-Transcriptional Modifications of Plant Small RNAs
H. Ebhardt
20110 citations
Semantic Scholar
Characterization of exogenous and endogenous plant small RNAs: discovery of a ubiquitous terminal modification.
H. Ebhardt
20070 citations
Semantic Scholar

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