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J. Keilwagen · SciRah

Researcher profile · Semantic Scholar

J. Keilwagen

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J. Keilwagen — researcher profile on SciRah

h-index: 33
Works: 100
Citations: 7,243

Most-cited papers

Shifting the limits in wheat research and breeding using a fully annotated reference genome
R. Appels, K. Eversole, N. Stein, C. Feuillet +197 more
2018Science2,820 citations Open access
Semantic Scholar
Using intron position conservation for homology-based gene prediction
J. Keilwagen, Michael Wenk, J. Erickson, M. Schattat +2 more
2016Nucleic Acids Research674 citations Open access
Semantic Scholar
GeMoMa: Homology-Based Gene Prediction Utilizing Intron Position Conservation and RNA-seq Data.
J. Keilwagen, F. Hartung, Jan Grau
2019Methods in molecular biology439 citations
Semantic Scholar
PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in R
Jan Grau, I. Grosse, J. Keilwagen
2015Bioinform.385 citations Open access
Semantic Scholar
Combining RNA-seq data and homology-based gene prediction for plants, animals and fungi
J. Keilwagen, F. Hartung, M. Paulini, S. Twardziok +1 more
2017BMC Bioinformatics324 citations Open access
Semantic Scholar
Area under Precision-Recall Curves for Weighted and Unweighted Data
J. Keilwagen, I. Grosse, Jan Grau
2014PLoS ONE222 citations Open access
Semantic Scholar
Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential
M. Rabanus-Wallace, B. Hackauf, M. Mascher, Thomas M. Lux +59 more
2021Nature Genetics219 citations Open access
Semantic Scholar
Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon
G. Monke, Michael Seifert, J. Keilwagen, Michael Mohr +7 more
2012Nucleic Acids Research168 citations Open access
Semantic Scholar
Elongation-related functions of LEAFY COTYLEDON1 during the development of Arabidopsis thaliana.
A. Junker, G. Monke, T. Rutten, J. Keilwagen +11 more
2012The Plant Journal130 citations
Semantic Scholar
Highly efficient multiplex editing: One-shot generation of 8x Nicotiana benthamiana and 12x Arabidopsis mutants
J. Stuttmann, K. Barthel, Patrick Martin, J. Ordon +8 more
2020bioRxiv124 citations Open access
Semantic Scholar
Which Factors Affect the Occurrence of Off-Target Effects Caused by the Use of CRISPR/Cas: A Systematic Review in Plants
D. Modrzejewski, F. Hartung, Heike Lehnert, Thorben Sprink +3 more
2020Frontiers in Plant Science116 citations Open access
Semantic Scholar
Detection and Identification of Genome Editing in Plants: Challenges and Opportunities
L. Grohmann, J. Keilwagen, N. Duensing, E. Dagand +4 more
2019Frontiers in Plant Science102 citations Open access
Semantic Scholar
Accurate prediction of cell type-specific transcription factor binding
J. Keilwagen, S. Posch, Jan Grau
2019Genome Biology97 citations Open access
Semantic Scholar
DiffLogo: a comparative visualization of sequence motifs
Martin Nettling, H. Treutler, Jan Grau, J. Keilwagen +2 more
2015BMC Bioinformatics75 citations Open access
Semantic Scholar
The Terpene Synthase Gene Family of Carrot (Daucus carota L.): Identification of QTLs and Candidate Genes Associated with Terpenoid Volatile Compounds
J. Keilwagen, Heike Lehnert, T. Berner, H. Budahn +3 more
2017Frontiers in Plant Science70 citations Open access
Semantic Scholar
Varying levels of complexity in transcription factor binding motifs
J. Keilwagen, Jan Grau
2015Nucleic Acids Research65 citations Open access
Semantic Scholar
De-Novo Discovery of Differentially Abundant Transcription Factor Binding Sites Including Their Positional Preference
J. Keilwagen, Jan Grau, I. Paponov, S. Posch +2 more
2011PLoS Comput. Biol.60 citations Open access
Semantic Scholar
Baculovirus Kimura two-parameter species demarcation criterion is confirmed by the distances of 38 core gene nucleotide sequences.
J. Wennmann, J. Keilwagen, J. Jehle
2018Journal of General Virology57 citations Open access
Semantic Scholar
Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C
M. Field, B. Rosen, Olga Dudchenko, E. Chan +16 more
2020GigaScience54 citations Open access
Semantic Scholar
A general approach for discriminative de novo motif discovery from high-throughput data
Jan Grau, S. Posch, I. Grosse, J. Keilwagen
2013German Conference on Bioinformatics52 citations Open access
Semantic Scholar
Jstacs: A Java Framework for Statistical Analysis and Classification of Biological Sequences
Jan Grau, J. Keilwagen, André Gohr, Berit Haldemann +2 more
2012Journal of machine learning research50 citations
Semantic Scholar
A chromosome‐scale assembly of the model desiccation tolerant grass Oropetium thomaeum
R. VanBuren, C. Wai, J. Keilwagen, Jeremy D Pardo
2018bioRxiv46 citations Open access
Semantic Scholar
Exact algorithms and heuristics for the Quadratic Traveling Salesman Problem with an application in bioinformatics
A. Fischer, F. Fischer, Gerold Jäger, J. Keilwagen +2 more
2014Discrete Applied Mathematics44 citations Open access
Semantic Scholar
Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome
Richard J. Edwards, M. Field, James M. Ferguson, Olga Dudchenko +15 more
2020bioRxiv43 citations Open access
Semantic Scholar
Separating the wheat from the chaff – a strategy to utilize plant genetic resources from ex situ genebanks
J. Keilwagen, B. Kilian, H. Özkan, Steve Babben +11 more
2014Scientific Reports43 citations Open access
Semantic Scholar
The Australian dingo is an early offshoot of modern breed dogs
M. Field, Sonu Yadav, Olga Dudchenko, Meera Esvaran +21 more
2022Science Advances37 citations Open access
Semantic Scholar
Genetic architecture and temporal patterns of biomass accumulation in spring barley revealed by image analysis
K. Neumann, Yu-Sheng Zhao, Jianting Chu, J. Keilwagen +3 more
2017BMC Plant Biology37 citations Open access
Semantic Scholar
Comparison Between Core Set Selection Methods Using Different Illumina Marker Platforms: A Case Study of Assessment of Diversity in Wheat
Behnaz Soleimani, Heike Lehnert, J. Keilwagen, J. Plieske +5 more
2020Frontiers in Plant Science36 citations Open access
Semantic Scholar
Chromosomal Passports Provide New Insights into Diffusion of Emmer Wheat
E. Badaeva, J. Keilwagen, H. Knüpffer, L. Waßermann +9 more
2015PLoS ONE36 citations Open access
Semantic Scholar
Genetic diversity and population structure in Beninese pigeon pea [Cajanus cajan (L.) Huth] landraces collection revealed by SSR and genome wide SNP markers
F. Zavinon, H. Adoukonou-Sagbadja, J. Keilwagen, Heike Lehnert +2 more
2019Genetic Resources and Crop Evolution35 citations
Semantic Scholar
Association genetics studies on frost tolerance in wheat (Triticum aestivum L.) reveal new highly conserved amino acid substitutions in CBF-A3, CBF-A15, VRN3 and PPD1 genes
Steve Babben, E. Schliephake, P. Janitza, T. Berner +11 more
2018BMC Genomics35 citations Open access
Semantic Scholar
Towards map-based cloning of FB_Mfu10: identification of a receptor-like kinase candidate gene underlying the Malus fusca fire blight resistance locus on linkage group 10
O. Emeriewen, K. Richter, S. Piazza, D. Micheletti +6 more
2018Molecular breeding35 citations Open access
Semantic Scholar
Detecting major introgressions in wheat and their putative origins using coverage analysis
J. Keilwagen, Heike Lehnert, T. Berner, E. Badaeva +3 more
2021Scientific Reports34 citations Open access
Semantic Scholar
Mineralocorticoid receptor interaction with SP1 generates a new response element for pathophysiologically relevant gene expression
S. Meinel, S. Ruhs, Katja Schumann, Nicole Strätz +6 more
2013Nucleic Acids Research32 citations Open access
Semantic Scholar
Genome wide association study of frost tolerance in wheat
Behnaz Soleimani, Heike Lehnert, Steve Babben, J. Keilwagen +8 more
2021Scientific Reports30 citations Open access
Semantic Scholar
Transposable elements and introgression introduce genetic variation in the invasive ant Cardiocondyla obscurior
M. Errbii, J. Keilwagen, K. Hoff, Raphael Steffen +3 more
2021Molecular Ecology28 citations Open access
Semantic Scholar
Construction of a dense genetic map of the Malus fusca fire blight resistant accession MAL0045 using tunable genotyping-by-sequencing SNPs and microsatellites
O. Emeriewen, K. Richter, T. Berner, J. Keilwagen +3 more
2020Scientific Reports26 citations Open access
Semantic Scholar
On the Value of Intra-Motif Dependencies of Human Insulator Protein CTCF
R. Eggeling, André Gohr, J. Keilwagen, Michael Mohr +3 more
2014PLoS ONE26 citations Open access
Semantic Scholar
The draft chromosome-level genome assembly of tetraploid ground cherry (Prunus fruticosa Pall.) from long reads
T. Wöhner, O. Emeriewen, A. Wittenberg, Harrie Schneiders +13 more
2021bioRxiv24 citations Open access
Semantic Scholar
Development of barley introgression lines carrying the leaf rust resistance genes Rph1 to Rph15
Matthew Martin, O. Chicaiza, J. C. Caffarel, Ahmad H. Sallam +10 more
202023 citations
Semantic Scholar
Detecting Large Chromosomal Modifications Using Short Read Data From Genotyping-by-Sequencing
J. Keilwagen, Heike Lehnert, T. Berner, S. Beier +8 more
2019Frontiers in Plant Science23 citations Open access
Semantic Scholar
Leveraging the Use of Historical Data Gathered During Seed Regeneration of an ex Situ Genebank Collection of Wheat
Norman Philipp, S. Weise, M. Oppermann, A. Börner +6 more
2018Frontiers in Plant Science18 citations Open access
Semantic Scholar
High Resolution Mapping of RphMBR1012 Conferring Resistance to Puccinia hordei in Barley (Hordeum vulgare L.)
L. Fazlikhani, J. Keilwagen, D. Kopahnke, H. Deising +2 more
2019Frontiers in Plant Science16 citations Open access
Semantic Scholar
Historical phenotypic data from seven decades of seed regeneration in a wheat ex situ collection
Norman Philipp, S. Weise, M. Oppermann, A. Börner +7 more
2019Scientific Data16 citations Open access
Semantic Scholar
Statistical test for tolerability of effects of an antifungal biocontrol strain on fungal communities in three arable soils
Kai Antweiler, Susanne Schreiter, J. Keilwagen, P. Baldrian +4 more
2017Microbial Biotechnology15 citations Open access
Semantic Scholar
Assessing the Barley Genome Zipper and Genomic Resources for Breeding Purposes
Cristina Silvar, Mihaela M. Martis, T. Nussbaumer, N. Haag +6 more
2015The Plant Genome13 citations Open access
Semantic Scholar
Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis
J. Keilwagen, Jan Grau, S. Posch, I. Grosse
2010BMC Bioinformatics12 citations Open access
Semantic Scholar
Insights into breeding history, hotspot regions of selection and untapped allelic diversity for bread wheat breeding.
Heike Lehnert, T. Berner, Daniel Lang, S. Beier +4 more
2022The Plant Journal11 citations Open access
Semantic Scholar
Finding needles in a haystack: identification of inter-specific introgressions in wheat genebank collections using low-coverage sequencing data
J. Keilwagen, Heike Lehnert, E. Badaeva, H. Özkan +3 more
2023Frontiers in Plant Science10 citations Open access
Semantic Scholar
Comparative genomics reveals low levels of inter- and intraspecies diversity in the causal agents of dwarf and common bunt of wheat and hint at conspecificity of Tilletia caries and T. laevis
S. Sedaghatjoo, B. Mishra, Monika K. Forster, Y. Becker +5 more
2022IMA Fungus10 citations Open access
Semantic Scholar

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