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Y. Chang · SciRah

Researcher profile · Semantic Scholar

Y. Chang

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Y. Chang — researcher profile on SciRah

h-index: 26
Works: 121
Citations: 3,903

Most-cited papers

Toward Minimal Residual Disease-Directed Therapy in Melanoma.
F. Rambow, A. Rogiers, O. Marin‐Bejar, S. Aibar +21 more
2018Cell681 citations Open access
Semantic Scholar
Quantitative multiplex immunohistochemistry reveals myeloid-inflamed tumor-immune complexity associated with poor prognosis
T. Tsujikawa, Sushil Kumar, Rohan N. Borkar, Vahid Azimi +18 more
2017Cell Reports516 citations Open access
Semantic Scholar
The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution
O. Rozenblatt-Rosen, A. Regev, Philipp Oberdoerffer, T. Nawy +362 more
2020Cell514 citations Open access
Semantic Scholar
Modeling Tumor Phenotypes In Vitro with Three-Dimensional Bioprinting
Ellen M. Langer, Brittany L. Allen-Petersen, S. King, Nicholas D. Kendsersky +15 more
2019Cell Reports220 citations Open access
Semantic Scholar
IFNγ-activated dermal lymphatic vessels inhibit cytotoxic T cells in melanoma and inflamed skin
Ryan S. Lane, Julia Femel, Alec P. Breazeale, C. P. Loo +6 more
2018Journal of Experimental Medicine154 citations Open access
Semantic Scholar
Secure estimation based Kalman Filter for cyber-physical systems against sensor attacks
Y. Chang, Qie Hu, C. Tomlin
2018at - Automatisierungstechnik131 citations
Semantic Scholar
Exploring approaches for predictive cancer patient digital twins: Opportunities for collaboration and innovation
Eric A. Stahlberg, M. Abdel-Rahman, Boris Aguilar, A. Asadpoure +29 more
2022Frontiers in Digital Health117 citations Open access
Semantic Scholar
T cell egress via lymphatic vessels is tuned by antigen encounter and limits tumor control
Maria M. Steele, A. Jaiswal, Ines Delclaux, I. Dryg +10 more
2023Nature Immunology116 citations Open access
Semantic Scholar
Sparse network identifiability via Compressed Sensing
David P. Hayden, Y. Chang, Jorge M. Gonçalves, C. Tomlin
2016at - Automatisierungstechnik79 citations Open access
Semantic Scholar
MITI Minimum Information guidelines for highly multiplexed tissue images
D. Schapiro, C. Yapp, A. Sokolov, S. Reynolds +34 more
2021Nature Methods78 citations Open access
Semantic Scholar
SHIFT: speedy histological-to-immunofluorescent translation of a tumor signature enabled by deep learning
Erik A. Burlingame, Mary McDonnell, Geoffrey F. Schau, Guillaume Thibault +6 more
2020Scientific Reports74 citations Open access
Semantic Scholar
Secure State Estimation and Control for Cyber Security of the Nonlinear Power Systems
Qie Hu, Dariush Fooladivanda, Y. Chang, C. Tomlin
2018IEEE Transactions on Control of Network Systems70 citations
Semantic Scholar
Four distinct immune microenvironment subtypes in gastric adenocarcinoma with special reference to microsatellite instability
Junhun Cho, Y. Chang, Y. Heo, Seungtae Kim +5 more
2018ESMO Open62 citations Open access
Semantic Scholar
SHIFT: speedy histopathological-to-immunofluorescent translation of whole slide images using conditional generative adversarial networks
Erik A. Burlingame, A. Margolin, J. Gray, Y. Chang
2018Medical Imaging55 citations Open access
Semantic Scholar
A multi-encoder variational autoencoder controls multiple transformational features in single-cell image analysis
Luke Ternes, Mark A. Dane, Sean M. Gross, M. Labrie +4 more
2022Communications Biology49 citations Open access
Semantic Scholar
Deep learning based Nucleus Classification in pancreas histological images
Y. Chang, Guillaume Thibault, Owen C Madin, Vahid Azimi +5 more
2017Annual International Conference of the IEEE Engineering in Medicine and Biology Society45 citations
Semantic Scholar
RESTORE: Robust intEnSiTy nORmalization mEthod for multiplexed imaging
Y. Chang, K. Chin, Guillaume Thibault, Jennifer R. Eng +2 more
2019Communications Biology37 citations Open access
Semantic Scholar
Toward reproducible, scalable, and robust data analysis across multiplex tissue imaging platforms
Erik A. Burlingame, Jennifer R. Eng, Guillaume Thibault, K. Chin +2 more
2020bioRxiv36 citations Open access
Semantic Scholar
High-throughput, single-particle tracking reveals nested membrane domains that dictate KRasG12D diffusion and trafficking
Yerim Lee, Carey Phelps, Tao Huang, Barmak Mostofian +8 more
2019eLife35 citations Open access
Semantic Scholar
Cyclic Multiplexed-Immunofluorescence (cmIF), a Highly Multiplexed Method for Single-Cell Analysis.
Jennifer R. Eng, Guillaume Thibault, Shiuh-Wen Luoh, J. Gray +2 more
2019Methods in molecular biology35 citations
Semantic Scholar
Efficient Self-Ensemble for Semantic Segmentation
Walid Bousselham, Guillaume Thibault, Lucas Pagano, Archana Machireddy +3 more
2021British Machine Vision Conference34 citations
Semantic Scholar
Genomic alterations during the in situ to invasive ductal breast carcinoma transition shaped by the immune system
A. Trinh, Carlos R. Gil Del Alcazar, S. Shukla, K. Chin +10 more
2020Molecular Cancer Research34 citations Open access
Semantic Scholar
VIPER is a genetically encoded peptide tag for fluorescence and electron microscopy
Julia K. Doh, J. White, H. Zane, Y. Chang +3 more
2018Proceedings of the National Academy of Sciences of the United States of America33 citations Open access
Semantic Scholar
A Mathematical Model of Breast Tumor Progression Based on Immune Infiltration
Navid Mohammad Mirzaei, Sumeyye Su, Dilruba Sofia, Maura Hegarty +11 more
2021Journal of Personalized Medicine32 citations Open access
Semantic Scholar
Morphodynamical cell state description via live-cell imaging trajectory embedding
J. Copperman, Sean M. Gross, Y. Chang, L. Heiser +1 more
2021bioRxiv26 citations Open access
Semantic Scholar
An Omic and Multidimensional Spatial Atlas from Serial Biopsies of an Evolving Metastatic Breast Cancer
Brett E. Johnson, Allison L. Creason, J. Stommel, Jamie M. Keck +39 more
2020bioRxiv26 citations Open access
Semantic Scholar
MYC Deregulation and PTEN Loss Model Tumor and Stromal Heterogeneity of Aggressive Triple-Negative Breast Cancer
Zinab O. Doha, Xiaoyan Wang, Nicholas L. Calistri, Jennifer R. Eng +25 more
2023Nature Communications24 citations Open access
Semantic Scholar
Dual-modality imaging of immunofluorescence and imaging mass cytometry for whole-slide imaging and accurate segmentation
Eun Na Kim, Phyllis Zixuan Chen, D. Bressan, M. Tripathi +7 more
2023Cell Reports Methods23 citations Open access
Semantic Scholar
Circulating Neoplastic-Immune Hybrid Cells Predict Metastatic Progression in Uveal Melanoma
M. Parappilly, Yu-ichi Chin, Riley M. Whalen, Ashley N. Anderson +10 more
2022Cancers21 citations Open access
Semantic Scholar
A PDE Model of Breast Tumor Progression in MMTV-PyMT Mice
Navid Mohammad Mirzaei, Zuzana Tatarova, Wen-Rui Hao, N. Changizi +5 more
2022Journal of Personalized Medicine21 citations Open access
Semantic Scholar
Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies
M. Labrie, Allen Li, Allison L. Creason, Courtney B. Betts +24 more
2021npj Precision Oncology21 citations Open access
Semantic Scholar
An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancer
Brett E. Johnson, Allison L. Creason, J. Stommel, Jamie M. Keck +42 more
2022Cell Reports Medicine19 citations Open access
Semantic Scholar
Efficient Self-Ensemble Framework for Semantic Segmentation
Walid Bousselham, G. Thibault, Lucas Pagano, Archana Machireddy +3 more
2021arXiv.org19 citations
Semantic Scholar
Digitize your Biology! Modeling multicellular systems through interpretable cell behavior
Jeanette Johnson, G. Stein-O'Brien, Max Booth, R. Heiland +31 more
2023bioRxiv18 citations Open access
Semantic Scholar
Robust cell detection and segmentation for image cytometry reveal Th17 cell heterogeneity#
T. Tsujikawa, Guillaume Thibault, Vahid Azimi, S. Sivagnanam +7 more
2019Cytometry Part A18 citations Open access
Semantic Scholar
Computational multiplex panel reduction to maximize information retention in breast cancer tissue microarrays
Luke Ternes, Jia-Ren Lin, Yu-An Chen, Joe W. Gray +1 more
2022bioRxiv16 citations Open access
Semantic Scholar
Investigating key cell types and molecules dynamics in PyMT mice model of breast cancer through a mathematical model
Navid Mohammad Mirzaei, N. Changizi, A. Asadpoure, Sumeyye Su +5 more
2022PLoS Comput. Biol.16 citations Open access
Semantic Scholar
Loss of myoepithelial calponin‐1 characterizes high‐risk ductal carcinoma in situ cases, which are further stratified by T cell composition
Elizabeth Mitchell, S. Jindal, T. Chan, Jayasri Narasimhan +5 more
2020Molecular Carcinogenesis16 citations Open access
Semantic Scholar
Secure state estimation for Cyber Physical Systems with sparse malicious packet drops
Gabriella Fiore, Y. Chang, Qie Hu, M. D. Di Benedetto +1 more
2017American Control Conference16 citations
Semantic Scholar
Spatial Profiles of Intratumoral PD-1+ Helper T Cells Predict Prognosis in Head and Neck Squamous Cell Carcinoma
K. Yoshimura, T. Tsujikawa, Junichi Mitsuda, H. Ogi +13 more
2021Frontiers in Immunology15 citations Open access
Semantic Scholar
Computational measurement of tumor immune microenvironment in gastric adenocarcinomas
Y. Chang, Y. Heo, Junhun Cho, S. Song +2 more
2018Scientific Reports15 citations Open access
Semantic Scholar
Deciphering the Immune Complexity in Esophageal Adenocarcinoma and Pre-Cancerous Lesions With Sequential Multiplex Immunohistochemistry and Sparse Subspace Clustering Approach
S. Sundaram, Eun Na Kim, G. M. Jones, S. Sivagnanam +7 more
2022Frontiers in Immunology13 citations Open access
Semantic Scholar
Secure state estimation for nonlinear power systems under cyber attacks
Qie Hu, Dariush Fooladivanda, Y. Chang, C. Tomlin
2016American Control Conference12 citations Open access
Semantic Scholar
Accelerating Submovement Decomposition With Search-Space Reduction Heuristics
Suraj Gowda, S. A. Overduin, Mo Chen, Y. Chang +2 more
2015IEEE Transactions on Biomedical Engineering12 citations
Semantic Scholar
BREAST CANCER HISTOPATHOLOGY IMAGE ANALYSIS PIPELINE FOR TUMOR PURITY ESTIMATION
Vahid Azimi, Y. Chang, Guillaume Thibault, Jaclyn Smith +6 more
2017IEEE International Symposium on Biomedical Imaging11 citations Open access
Semantic Scholar
MIM-CyCIF: Masked Imaging Modeling for Enhancing Cyclic Immunofluorescence (CyCIF) with Panel Reduction and Imputation
Z. Sims, G. Mills, Y. Chang
2023bioRxiv10 citations Open access
Semantic Scholar
Quantitative analysis of histological tissue image based on cytological profiles and spatial statistics
Y. Chang, Guillaume Thibault, Vahid Azimi, Brett E. Johnson +4 more
2016Annual International Conference of the IEEE Engineering in Medicine and Biology Society10 citations Open access
Semantic Scholar
ME-VAE: Multi-Encoder Variational AutoEncoder for Controlling Multiple Transformational Features in Single Cell Image Analysis
Luke Ternes, Mark A. Dane, Sean M. Gross, M. Labrie +4 more
2021bioRxiv9 citations Open access
Semantic Scholar
VISTA: VIsual Semantic Tissue Analysis for pancreatic disease quantification in murine cohorts
Luke Ternes, Ge Huang, C. Lanciault, Guillaume Thibault +4 more
2020Scientific Reports9 citations Open access
Semantic Scholar
Secure Estimation for Unmanned Aerial Vehicles against Adversarial Cyber Attacks
Qie Hu, Y. Chang, C. Tomlin
2016arXiv.org9 citations
Semantic Scholar

Frequent co-authors

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Guillaume Thibault×18
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J. Gray×18
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L. Coussens×12
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K. Chin×9
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Erik A. Burlingame

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Jennifer R. Eng×8

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Brett E. Johnson×7

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C. Tomlin — researcher profile on SciRah

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Joe W. Gray — researcher profile on SciRah

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