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L. McIver · SciRah

Researcher profile · Semantic Scholar

L. McIver

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L. McIver — researcher profile on SciRah

h-index: 27
Works: 57
Citations: 36K

Most-cited papers

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E. Bolyen, J. Rideout, M. Dillon, N. Bokulich +108 more
2019Nature Biotechnology20K citations Open access
Semantic Scholar
Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
J. Lloyd-Price, C. Arze, A. Ananthakrishnan, M. Schirmer +53 more
2019Nature2,771 citations Open access
Semantic Scholar
Multivariable association discovery in population-scale meta-omics studies
Himel Mallick, A. Rahnavard, L. McIver, Si-Yuan Ma +16 more
2021bioRxiv2,289 citations Open access
Semantic Scholar
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
Francesco Beghini, L. McIver, Aitor Blanco-Míguez, Leonard Dubois +13 more
2020bioRxiv1,950 citations Open access
Semantic Scholar
Gut microbiome structure and metabolic activity in inflammatory bowel disease
E. Franzosa, Alexandra Sirota-Madi, J. Ávila-Pacheco, Nadine Fornelos +23 more
2018Nature Microbiology1,779 citations Open access
Semantic Scholar
Species-level functional profiling of metagenomes and metatranscriptomes
E. Franzosa, L. McIver, Gholamali Rahnavard, L. Thompson +7 more
2018Nature Methods1,480 citations Open access
Semantic Scholar
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
Aitor Blanco-Míguez, Francesco Beghini, Fabio Cumbo, L. McIver +22 more
2023Nature Biotechnology1,287 citations Open access
Semantic Scholar
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E. Bolyen, J. Rideout, M. Dillon, N. Bokulich +106 more
20181,200 citations Open access
Semantic Scholar
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E. Bolyen, J. Rideout, M. Dillon, N. Bokulich +108 more
2019Nature Biotechnology724 citations Open access
Semantic Scholar
Dynamics of metatranscription in the inflammatory bowel disease gut microbiome
M. Schirmer, E. Franzosa, J. Lloyd-Price, L. McIver +17 more
2018Nature Microbiology512 citations Open access
Semantic Scholar
bioBakery: a meta’omic analysis environment
L. McIver, G. Abu-Ali, E. Franzosa, Randall Schwager +4 more
2017Bioinform.324 citations Open access
Semantic Scholar
Transcriptional profile of isoproterenol-induced cardiomyopathy and comparison to exercise-induced cardiac hypertrophy and human cardiac failure
C. Galindo, M. A. Skinner, Mounir Errami, L. D. Olson +7 more
2009BMC Physiology100 citations Open access
Semantic Scholar
Discovery of bioactive microbial gene products in inflammatory bowel disease
Yan-Cong Zhang, Amrisha Bhosle, Sena Bae, L. McIver +17 more
2022Nature94 citations Open access
Semantic Scholar
Intestinal Blastocystis is linked to healthier diets and more favorable cardiometabolic outcomes in 56,989 individuals from 32 countries.
Elisa Piperni, L. H. Nguyen, Paolo Manghi, Hanseul Kim +32 more
2024Cell85 citations Open access
Semantic Scholar
High-sensitivity pattern discovery in large, paired multiomic datasets
A. Ghazi, Kathleen Sucipto, A. Rahnavard, E. Franzosa +8 more
2022Bioinform.72 citations Open access
Semantic Scholar
Extending and improving metagenomic taxonomic profiling with uncharacterized species with MetaPhlAn 4
Aitor Blanco-Míguez, Francesco Beghini, Fabio Cumbo, L. McIver +21 more
2022bioRxiv70 citations Open access
Semantic Scholar
Diversity of fall armyworm, Spodoptera frugiperda and their gut bacterial community in Kenya
J. Gichuhi, Sevgan Subramanian, F. Khamis, J. van den Berg +366 more
2019bioRxiv65 citations Open access
Semantic Scholar
Author Correction: Gut microbiome structure and metabolic activity in inflammatory bowel disease
E. Franzosa, Alexandra Sirota-Madi, J. Ávila-Pacheco, Nadine Fornelos +23 more
2019Nature Microbiology54 citations Open access
Semantic Scholar
Metagenomics of the Gut Microbiome in Parkinson’s Disease: Prodromal Changes
N. Palacios, Jeremy E. Wilkinson, K. Bjørnevik, M. Schwarzschild +3 more
2023Annals of Neurology50 citations Open access
Semantic Scholar
Divergence of Drosophila melanogaster repeatomes in response to a sharp microclimate contrast in Evolution Canyon, Israel
Young Bun Kim, J. Oh, L. McIver, E. Rashkovetsky +6 more
2014Proceedings of the National Academy of Sciences of the United States of America48 citations Open access
Semantic Scholar
Alterations in the gut microbiome implicate key taxa and metabolic pathways across inflammatory arthritis phenotypes
Kelsey N. Thompson, K. Bonham, N. Ilott, G. Britton +25 more
2023Science Translational Medicine46 citations Open access
Semantic Scholar
Evaluation of microsatellite variation in the 1000 Genomes Project pilot studies is indicative of the quality and utility of the raw data and alignments
L. McIver, J. W. Fondon, M. A. Skinner, H. R. Garner
2011Genomics43 citations Open access
Semantic Scholar
Nicotine and oxidative stress induced exomic variations are concordant and overrepresented in cancer-associated genes
Jasmin H. Bavarva, Hongseok Tae, L. McIver, H. Garner
2014OncoTarget36 citations Open access
Semantic Scholar
Multi-omic analysis reveals transkingdom gut dysbiosis in metabolic dysfunction-associated steatotic liver disease
Hanseul Kim, Paul Nelson, Etienne Nzabarushimana, Jiaxian Shen +17 more
2025Nature Metabolism31 citations
Semantic Scholar
A two-cohort study on the association between the gut microbiota and bone density, microarchitecture, and strength
P. Okoro, E. Orwoll, C. Huttenhower, X. Morgan +10 more
2023Frontiers in Endocrinology31 citations Open access
Semantic Scholar
Microsatellite genotyping reveals a signature in breast cancer exomes
L. McIver, N. C. Fonville, E. Karunasena, H. Garner
2014Breast Cancer Research and Treatment30 citations Open access
Semantic Scholar
Population-scale analysis of human microsatellites reveals novel sources of exonic variation
L. McIver, J. McCormick, Alejandro Rodríguez Martín, J. Fondon +1 more
2012Gene28 citations Open access
Semantic Scholar
Large scale comparison of non-human sequences in human sequencing data
Hongseok Tae, E. Karunasena, Jasmin H. Bavarva, L. McIver +1 more
2014Genomics26 citations Open access
Semantic Scholar
Metagenomic assessment of gut microbial communities and risk of severe COVID-19
Long H. Nguyen, Daniel A Okin, D. Drew, Vincent M. Battista +21 more
2022Genome Medicine25 citations Open access
Semantic Scholar
Comprehensive profile of the companion animal gut microbiome integrating reference-based and reference-free methods
Tobyn A. Branck, Zhi-Jin Hu, William A. Nickols, Aaron M. Walsh +12 more
2024The ISME Journal23 citations Open access
Semantic Scholar
A long AAAG repeat allele in the 5′ UTR of the ERR-γ gene is correlated with breast cancer predisposition and drives promoter activity in MCF-7 breast cancer cells
C. Galindo, J. McCormick, V. Bubb, D. H. Abid Alkadem +7 more
2010Breast Cancer Research and Treatment23 citations Open access
Semantic Scholar
Global microsatellite content distinguishes humans, primates, animals, and plants.
C. Galindo, L. McIver, J. McCormick, M. A. Skinner +5 more
2009Molecular biology and evolution22 citations Open access
Semantic Scholar
Research funding: Same work, twice the money?
H. Garner, L. McIver, Michael B. Waitzkin
2013Nature20 citations
Semantic Scholar
Unintended pregnancy and viral suppression in pregnant women living with HIV
L. Sudhof, A. Bergerat-Thompson, L. McIver, D. A. Briggs +6 more
2018American Journal of Obstetrics & Gynecology MFM19 citations Open access
Semantic Scholar
Overview of the Microbiome among Nurses study (Micro-N) as an example of prospective characterization of the microbiome within cohort studies
Christine L. Everett, Cheng-Chen Li, Jeremy E. Wilkinson, L. Nguyen +14 more
2021Nature Protocols18 citations Open access
Semantic Scholar
The Dynamic Exome: acquired variants as individuals age
Jasmin H. Bavarva, Hongseok Tae, L. McIver, E. Karunasena +1 more
2014Aging17 citations Open access
Semantic Scholar
Sporadic Breast Cancer Patients' Germline DNA Exhibit an AT-Rich Microsatellite Signature
C. Galindo, L. McIver, Hongseok Tae, J. McCormick +6 more
2011Genes, Chromosomes and Cancer17 citations Open access
Semantic Scholar
Somatic intronic microsatellite loci differentiate glioblastoma from lower-grade gliomas
E. Karunasena, L. McIver, Brian R. Rood, Xiaowei Wu +3 more
2014OncoTarget15 citations Open access
Semantic Scholar
Comparison of genome diversity of Brucella spp. field isolates using Universal Bio-signature Detection Array and whole genome sequencing reveals limitations of current diagnostic methods.
S. Shallom, Hongseok Tae, L. Sarmento, Dale Preston +5 more
2012Gene14 citations
Semantic Scholar
Comparative Global Gene Expression Profiles of Wild-Type Yersinia pestis CO92 and Its Braun Lipoprotein Mutant at Flea and Human Body Temperatures
C. Galindo, J. Sha, Scott T. Moen, Stacy L. Agar +6 more
2010Comparative and Functional Genomics14 citations Open access
Semantic Scholar
Distributed under Creative Commons Cc-by 4.0 a Reproducible Approach to High-throughput Biological Data Acquisition and Integration
C. Huttenhower, D. Börnigen, Yo Sup Moon, Gholamali Rahnavard +8 more
12 citations
Semantic Scholar
A species independent universal bio-detection microarray for pathogen forensics and phylogenetic classification of unknown microorganisms
S. Shallom, J. Weeks, C. Galindo, L. McIver +4 more
2011BMC Microbiology11 citations Open access
Semantic Scholar
Supplemental Oxygen Alters the Airway Microbiome in Cystic Fibrosis
J. Vieira, S. Jesudasen, Lindsay Bringhurst, H. Sui +8 more
2022mSystems10 citations Open access
Semantic Scholar
EvoCor: a platform for predicting functionally related genes using phylogenetic and expression profiles
W. James Dittmar, L. McIver, P. Michalak, H. Garner +1 more
2014Nucleic Acids Res.9 citations Open access
Semantic Scholar
‘Cut from the same cloth’: Shared microsatellite variants among cancers link to ectodermal tissues-neural tube and crest cells
E. Karunasena, L. McIver, Jasmin H. Bavarva, Xiaowei Wu +2 more
2015OncoTarget8 citations Open access
Semantic Scholar
Publisher Correction: Overview of the Microbiome Among Nurses study (Micro-N) as an example of prospective characterization of the microbiome within cohort studies
Christine Everett, Cheng-Chen Li, Jeremy E. Wilkinson, L. Nguyen +14 more
2021Nature Protocols7 citations Open access
Semantic Scholar
High-sensitivity pattern discovery in large, paired multi-omic datasets
Andrew R. Ghazi, Kathleen Sucipto, Gholamali Rahnavard, E. Franzosa +8 more
2021bioRxiv6 citations Open access
Semantic Scholar
Genomic leftovers: identifying novel microsatellites, over-represented motifs and functional elements in the human genome
N. C. Fonville, Karthik Velmurugan, Hongseok Tae, Z. Vaksman +2 more
2016Scientific Reports6 citations Open access
Semantic Scholar
Population analysis of microsatellite genotypes reveals a signature associated with ovarian cancer
N. C. Fonville, Z. Vaksman, L. McIver, H. Garner
2015OncoTarget4 citations Open access
Semantic Scholar
Evaluating metagenomic analyses for undercharacterized environments: what’s needed to light up the microbial dark matter?
William A. Nickols, L. McIver, Aaron M. Walsh, Yan-Cong Zhang +9 more
2024bioRxiv1 citations Open access
Semantic Scholar

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