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Himel Mallick · SciRah

Researcher profile · Semantic Scholar

Himel Mallick

Cornell University

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Himel Mallick — researcher profile on SciRah

ORCID iD 0000-0003-4956-2429Homepage

h-index: 25
Works: 72
Citations: 9,607

Most-cited papers

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
J. Lloyd-Price, C. Arze, A. Ananthakrishnan, M. Schirmer +53 more
2019Nature2,771 citations Open access
Semantic Scholar
Multivariable association discovery in population-scale meta-omics studies
Himel Mallick, A. Rahnavard, L. McIver, Si-Yuan Ma +16 more
2021bioRxiv2,289 citations Open access
Semantic Scholar
Gut microbiome structure and metabolic activity in inflammatory bowel disease
E. Franzosa, Alexandra Sirota-Madi, J. Ávila-Pacheco, Nadine Fornelos +23 more
2018Nature Microbiology1,778 citations Open access
Semantic Scholar
Global Chemical Impact of the Microbiome Includes Novel Bile Acid Conjugations
R. Quinn, A. Melnik, Alison Vrbanac, T. Fu +54 more
2020Nature544 citations Open access
Semantic Scholar
Stability of the human faecal microbiome in a cohort of adult men
R. Mehta, G. Abu-Ali, David A. Drew, J. Lloyd-Price +14 more
2018Nature Microbiology258 citations Open access
Semantic Scholar
Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences
Himel Mallick, E. Franzosa, Lauren J. Mclver, Soumya Banerjee +6 more
2019Nature Communications231 citations Open access
Semantic Scholar
Metatranscriptome of human fecal microbial communities in a cohort of adult men
G. Abu-Ali, R. Mehta, J. Lloyd-Price, Himel Mallick +8 more
2018Nature Microbiology213 citations Open access
Semantic Scholar
Negative binomial mixed models for analyzing microbiome count data
Xinyan Zhang, Himel Mallick, Zaixiang Tang, Lei Zhang +3 more
2017BMC Bioinformatics166 citations Open access
Semantic Scholar
Experimental design and quantitative analysis of microbial community multiomics
Himel Mallick, Si-Yuan Ma, E. Franzosa, T. Vatanen +2 more
2017Genome Biology157 citations Open access
Semantic Scholar
MaAsLin 3: refining and extending generalized multivariable linear models for meta-omic association discovery
William A. Nickols, T. Kuntz, Jiaxian Shen, Sagun Maharjan +5 more
2024bioRxiv153 citations Open access
Semantic Scholar
Population structure discovery in meta-analyzed microbial communities and inflammatory bowel disease using MMUPHin
Si-Yuan Ma, D. Shungin, Himel Mallick, M. Schirmer +6 more
2022Genome Biology147 citations Open access
Semantic Scholar
Association Between Sulfur-Metabolizing Bacterial Communities in Stool and Risk of Distal Colorectal Cancer in Men
L. Nguyen, Wenjie Ma, Dong D. Wang, Yin Cao +21 more
2020Gastroenterology145 citations Open access
Semantic Scholar
Clinical trial designs incorporating predictive biomarkers
L. Renfro, Himel Mallick, Ming-Wen An, D. Sargent +1 more
2016Cancer Treatment Reviews72 citations Open access
Semantic Scholar
A statistical model for describing and simulating microbial community profiles
Si-Yuan Ma, Bo-Yu Ren, Himel Mallick, Yo Sup Moon +8 more
2021bioRxiv70 citations Open access
Semantic Scholar
Oronasopharyngeal suction versus wiping of the mouth and nose at birth: a randomised equivalency trial.
J. Kelleher, R. Bhat, A. Salas, Dylan R. Addis +9 more
2013The Lancet57 citations
Semantic Scholar
Author Correction: Gut microbiome structure and metabolic activity in inflammatory bowel disease
E. Franzosa, Alexandra Sirota-Madi, J. Ávila-Pacheco, Nadine Fornelos +23 more
2019Nature Microbiology54 citations Open access
Semantic Scholar
A New Bayesian Lasso
Himel Mallick, Neng-Jun Yi
2014Statistics and its Interface51 citations Open access
Semantic Scholar
Bayesian Methods for High Dimensional Linear Models
Himel Mallick, Neng-Jun Yi
2013Journal of Biometrics & Biostatistics48 citations Open access
Semantic Scholar
A Bayesian method for detecting pairwise associations in compositional data
Emma H. Schwager, Himel Mallick, Steffen Ventz, C. Huttenhower
2017PLoS Comput. Biol.41 citations Open access
Semantic Scholar
An integrated Bayesian framework for multi-omics prediction and classification
Himel Mallick, Anupreet Porwal, S. Saha, Piyali Basak +2 more
2023bioRxiv33 citations Open access
Semantic Scholar
Bayesian Bridge Regression
Himel Mallick, Neng-Jun Yi
2017Journal of Applied Statistics33 citations Open access
Semantic Scholar
ZERO-INFLATED NEGATIVE BINOMIAL REGRESSION FOR DIFFERENTIAL ABUNDANCE TESTING IN MICROBIOME STUDIES
Xinyan Zhang, Himel Mallick, Neng-Jun Yi
201633 citations
Semantic Scholar
Differential expression of single-cell RNA-seq data using Tweedie models
Himel Mallick, Suvo Chatterjee, Shrabanti Chowdhury, Saptarshi Chatterjee +2 more
2021bioRxiv31 citations Open access
Semantic Scholar
Mortality and intestinal failure in surgical necrotizing enterocolitis.
J. Kelleher, Himel Mallick, Thomas D. Soltau, C. Harmon +1 more
2013Journal of Pediatric Surgery30 citations
Semantic Scholar
Differences in Clinical Course, Genetics, and the Microbiome Between Familial and Sporadic Inflammatory Bowel Diseases
N. Borren, Grace Conway, J. Garber, H. Khalili +5 more
2018Journal of Crohn's & Colitis29 citations Open access
Semantic Scholar
The reciprocal Bayesian LASSO
Himel Mallick, Rahim Alhamzawi, Erina Paul, V. Svetnik
2020Statistics in Medicine18 citations Open access
Semantic Scholar
Multiple Comparisons in Genetic Association Studies: A Hierarchical Modeling Approach
Neng-Jun Yi, Shizhong Xu, Xiang-Yang Lou, Himel Mallick
2014Statistical Applications in Genetics and Molecular Biology17 citations Open access
Semantic Scholar
Transcriptomes and shRNA Suppressors in a TP53 Allele-specific Model of Early-onset Colon Cancer in African Americans
C. Weige, M. Birtwistle, Himel Mallick, Neng-Jun Yi +13 more
2014Molecular Cancer Research17 citations Open access
Semantic Scholar
Group regularization for zero‐inflated negative binomial regression models with an application to health care demand in Germany
Saptarshi Chatterjee, Shrabanti Chowdhury, Himel Mallick, Prithish Banerjee +1 more
2018Statistics in Medicine14 citations
Semantic Scholar
EM Adaptive LASSO—A Multilocus Modeling Strategy for Detecting SNPs Associated with Zero-inflated Count Phenotypes
Himel Mallick, H. Tiwari
2016Frontiers in Genetics14 citations Open access
Semantic Scholar
Bayesian reciprocal LASSO quantile regression
Rahim Alhamzawi, Himel Mallick
2020Communications in statistics. Simulation and computation12 citations
Semantic Scholar
Group regularization for zero-inflated poisson regression models with an application to insurance ratemaking
Shrabanti Chowdhury, Saptarshi Chatterjee, Himel Mallick, Prithish Banerjee +1 more
2018Journal of Applied Statistics12 citations
Semantic Scholar
Bayesian Group Bridge for Bi-level Variable Selection
Himel Mallick, Neng-Jun Yi
2017Computational Statistics & Data Analysis12 citations Open access
Semantic Scholar
A genetic association study detects haplotypes associated with obstructive heart defects
Ming Li, M. Cleves, Himel Mallick, S. Erickson +4 more
2014Human Genetics12 citations Open access
Semantic Scholar
Bayesian Joint Additive Factor Models for Multiview Learning
Niccoló Anceschi, F. Ferrari, D. Dunson, Himel Mallick
2024Biometrics10 citations
Semantic Scholar
Orchestrating Microbiome Analysis with Bioconductor
Tuomas Borman, Giulio Benedetti, G. Muluh, A. Raulo +17 more
2025bioRxiv9 citations Open access
Semantic Scholar
Population Structure Discovery in Meta-Analyzed Microbial Communities and Inflammatory Bowel Disease
Si-Yuan Ma, D. Shungin, Himel Mallick, M. Schirmer +6 more
2020bioRxiv9 citations Open access
Semantic Scholar
Omics community detection using multi-resolution clustering
A. Rahnavard, Suvo Chatterjee, Bahar Sayoldin, K. Crandall +2 more
2021Bioinform.8 citations Open access
Semantic Scholar
A Note on the Adaptive LASSO for Zero-Inflated Poisson Regression
Prithish Banerjee, Broti Garai, Himel Mallick, Shrabanti Chowdhury +1 more
2018Journal of Probability and Statistics8 citations Open access
Semantic Scholar
Meta-analytic microbiome target discovery for immune checkpoint inhibitor response in advanced melanoma
Xinyang Zhang, Himel Mallick, A. Rahnavard
2025bioRxiv6 citations Open access
Semantic Scholar
Unified reciprocal LASSO estimation via least squares approximation
Erina Paul, Himel Mallick
2022Communications in statistics. Simulation and computation4 citations Open access
Semantic Scholar
Quantile Regression and Beyond in Statistical Analysis of Data
Rahim Alhamzawi, Ke-Ming Yu, Himel Mallick
2019Journal of Probability and Statistics4 citations Open access
Semantic Scholar
Some contributions to bayesian regularization methods with applications to genetics and clinical trials
Himel Mallick
20154 citations
Semantic Scholar
Conformalized Multiview Learning
Saptarshi Roy, Sreya Sarkar, C. Banerjee, Erina Paul +2 more
2026bioRxiv2 citations Open access
Semantic Scholar
Multi-omics Integration of Microbiota Transplant Therapy in Children with Autism Spectrum Disorders
Himel Mallick, Khemlal Nirmalkar, James B. Adams, R. Krajmalnik-Brown
2025bioRxiv2 citations Open access
Semantic Scholar
Bayesian Cooperative Learning for Multimodal Integration
Saptarshi Roy, Sreya Sarkar, Erina Paul, Piyali Basak +2 more
2025bioRxiv2 citations Open access
Semantic Scholar
ENDOSCOPIC GASTRIC FOOD RETENTION RATES FOR GLP-1RA USERS CAN BE POTENTIALLY MITIGATED BY PRE-COLONOSCOPY FASTING PROTOCOLS IN A PROPENSITY-MATCHED COHORT STUDY
Anam Rizvi, Sanjay Salgado, Carolyn Newberry, Benjamin Gordon +8 more
2024Gastrointestinal Endoscopy2 citations
Semantic Scholar
Accelerated Bayesian Reciprocal LASSO
Erina Paul, Jingyu He, Himel Mallick
2023Communications in statistics. Simulation and computation2 citations
Semantic Scholar
Editorial: Statistical and Computational Methods for Microbiome Multi-Omics Data
Himel Mallick, V. Bucci, Ling-Ling An
2020Frontiers in Genetics2 citations Open access
Semantic Scholar
Hierarchical Models for Genetic Association Studies
Himel Mallick, Neng-Jun Yi
20132 citations Open access
Semantic Scholar

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