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Paul Dominic B. Olinares · SciRah

Researcher profile · Semantic Scholar

Paul Dominic B. Olinares

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Paul Dominic B. Olinares — researcher profile on SciRah

h-index: 26
Works: 66
Citations: 2,797

Most-cited papers

Structural basis for helicase-polymerase coupling in the SARS-CoV-2 replication-transcription complex
James Chen, B. Malone, E. Llewellyn, M. Grasso +9 more
2020bioRxiv425 citations Open access
Semantic Scholar
PPDB, the Plant Proteomics Database at Cornell
Qi Sun, B. Zybailov, W. Majeran, G. Friso +2 more
2008Nucleic Acids Res.413 citations Open access
Semantic Scholar
Megadalton Complexes in the Chloroplast Stroma of Arabidopsis thaliana Characterized by Size Exclusion Chromatography, Mass Spectrometry, and Hierarchical Clustering*
Paul Dominic B. Olinares, L. Ponnala, K. V. van Wijk
2010Molecular & Cellular Proteomics203 citations Open access
Semantic Scholar
Subunits of the Plastid ClpPR Protease Complex Have Differential Contributions to Embryogenesis, Plastid Biogenesis, and Plant Development in Arabidopsis[C][W]
Jitae Kim, Andrea Rudella, Verenice Ramirez Rodriguez, B. Zybailov +2 more
2009The Plant Cell Online147 citations Open access
Semantic Scholar
The Clp protease system; a central component of the chloroplast protease network.
Paul Dominic B. Olinares, Jitae Kim, K. V. van Wijk
2011Biochimica et Biophysica Acta129 citations Open access
Semantic Scholar
Stepwise promoter melting by bacterial RNA polymerase
James Chen, Courtney Chiu, S. Gopalkrishnan, Albert Y. Chen +9 more
2020Molecules and Cells110 citations Open access
Semantic Scholar
Construction of plastid reference proteomes for maize and Arabidopsis and evaluation of their orthologous relationships; the concept of orthoproteomics.
Ming-Shu Huang, G. Friso, K. Nishimura, Xian Qu +4 more
2013Journal of Proteome Research99 citations
Semantic Scholar
Dynamic Regulation of Tfh Selection During the Germinal Center Reaction
Julia Merkenschlager, Shlomo Finkin, Victor A. Ramos, Julia Kraft +9 more
2021Nature85 citations Open access
Semantic Scholar
Structural basis for backtracking by the SARS-CoV-2 replication–transcription complex
B. Malone, James Chen, Qi Wang, E. Llewellyn +10 more
2021Proceedings of the National Academy of Sciences of the United States of America79 citations Open access
Semantic Scholar
Subunit Stoichiometry, Evolution, and Functional Implications of an Asymmetric Plant Plastid ClpP/R Protease Complex in Arabidopsis[C][W]
Paul Dominic B. Olinares, Jitae Kim, Jerrold I. Davis, K. V. van Wijk
2011The Plant Cell78 citations Open access
Semantic Scholar
Highly synergistic combinations of nanobodies that target SARS-CoV-2 and are resistant to escape
Fred D. Mast, Peter C. Fridy, Natalia E. Ketaren, Junjie Wang +25 more
2021eLife61 citations Open access
Semantic Scholar
Structural, functional, and genetic analyses of the actinobacterial transcription factor RbpA
Elizabeth A. Hubin, Aline Tabib-Salazar, Laurence J. Humphrey, J. E. Flack +4 more
2015Proceedings of the National Academy of Sciences of the United States of America60 citations Open access
Semantic Scholar
Structural basis of transcription arrest by coliphage HK022 Nun in an Escherichia coli RNA polymerase elongation complex
Jin-Young Kang, Paul Dominic B. Olinares, James Chen, E. Campbell +4 more
2017eLife59 citations Open access
Semantic Scholar
Modified Clp Protease Complex in the ClpP3 Null Mutant and Consequences for Chloroplast Development and Function in Arabidopsis1[C][W][OA]
Jitae Kim, Paul Dominic B. Olinares, Soo-hyun Oh, S. Ghisaura +3 more
2013Plant Physiology59 citations Open access
Semantic Scholar
Revealing Higher Order Protein Structure Using Mass Spectrometry
B. Chait, M. Cadene, Paul Dominic B. Olinares, M. Rout +1 more
2016Journal of the American Society for Mass Spectrometry54 citations Open access
Semantic Scholar
Structural basis for substrate selection by the SARS-CoV-2 replicase
B. Malone, Jason K. Perry, Paul Dominic B. Olinares, Hery W. Lee +15 more
2023Nature53 citations Open access
Semantic Scholar
Structural basis for backtracking by the SARS-CoV-2 replication-transcription complex
B. Malone, James Chen, Qi Wang, E. Llewellyn +10 more
2021bioRxiv51 citations Open access
Semantic Scholar
Author response: Structural basis of transcription arrest by coliphage HK022 Nun in an Escherichia coli RNA polymerase elongation complex
Jin-Young Kang, Paul Dominic B. Olinares, James Chen, E. Campbell +4 more
201749 citations Open access
Semantic Scholar
Shelterin is a dimeric complex with extensive structural heterogeneity
J. C. Zinder, Paul Dominic B. Olinares, V. Svetlov, M. Bush +4 more
2022bioRxiv44 citations Open access
Semantic Scholar
Malaria parasites use a soluble RhopH complex for erythrocyte invasion and an integral form for nutrient uptake
M. Schureck, J. Darling, A. Merk, Jinfeng Shao +8 more
2021eLife43 citations Open access
Semantic Scholar
Structural basis for transcription complex disruption by the Mfd translocase
Jin-Young Kang, E. Llewellyn, James Chen, Paul Dominic B. Olinares +4 more
2020bioRxiv40 citations Open access
Semantic Scholar
Analysis of the mechanosensor channel functionality of TACAN
Y. Niu, X. Tao, G. Vaisey, Paul Dominic B. Olinares +3 more
2021bioRxiv32 citations Open access
Semantic Scholar
The workflow for quantitative proteome analysis of chloroplast development and differentiation, chloroplast mutants, and protein interactions by spectral counting.
G. Friso, Paul Dominic B. Olinares, K. V. van Wijk
2011Methods in molecular biology32 citations
Semantic Scholar
Native mass spectrometry-based screening for optimal sample preparation in single particle cryo-EM
Paul Dominic B. Olinares, Jin-Young Kang, E. Llewellyn, Courtney Chiu +6 more
2020Structure31 citations Open access
Semantic Scholar
Functional Plasticity of the AgrC Receptor Histidine Kinase Required for Staphylococcal Virulence
Boyuan Wang, Aishan Zhao, Q. Xie, Paul Dominic B. Olinares +3 more
2017Cell Chemical Biology30 citations Open access
Semantic Scholar
A robust workflow for native mass spectrometric analysis of affinity-isolated endogenous protein assemblies
Paul Dominic B. Olinares, Amelia D. Dunn, J. Padovan, Javier Fernandez-Martinez +2 more
2016Analytical Chemistry26 citations Open access
Semantic Scholar
Native Mass Spectrometry Analysis of Affinity-Captured Endogenous Yeast RNA Exosome Complexes.
Paul Dominic B. Olinares, B. Chait
2019Methods in molecular biology24 citations
Semantic Scholar
The replication initiator of the cholera pathogen's second chromosome shows structural similarity to plasmid initiators
N. Orlova, Matthew A. Gerding, Olha Ivashkiv, Paul Dominic B. Olinares +3 more
2016Nucleic Acids Research23 citations Open access
Semantic Scholar
Structural basis of substrate recognition by a polypeptide processing and secretion transporter
V. Kieuvongngam, Paul Dominic B. Olinares, Anthony Palillo, M. Oldham +2 more
2020eLife22 citations Open access
Semantic Scholar
Mechanisms of opening and closing of the bacterial replicative helicase
D. Jeruzalmi, Jillian Chase, Andrew Catalano, A. Noble +7 more
2018eLife22 citations Open access
Semantic Scholar
A Bayesian Mixture Model for Comparative Spectral Count Data in Shotgun Proteomics
J. Booth, K. Eilertson, Paul Dominic B. Olinares, Hai-Yuan Yu
2011Molecular & Cellular Proteomics20 citations Open access
Semantic Scholar
Immunodominant surface epitopes power immune evasion in the African trypanosome
Anastasia Gkeka, Francisco Aresta-Branco, G. Triller, Evi P. Vlachou +10 more
2021bioRxiv18 citations Open access
Semantic Scholar
Differential dynamics specify MeCP2 function at nucleosomes and methylated DNA
Gabriella N. L. Chua, John W. Watters, Paul Dominic B. Olinares, Masuda Begum +4 more
2024Nature Structural & Molecular Biology17 citations Open access
Semantic Scholar
Structural basis for substrate selection by the SARS-CoV-2 replicase
B. Malone, J. Perry, Paul Dominic B. Olinares, James Chen +13 more
2022bioRxiv17 citations Open access
Semantic Scholar
Using a function-first ‘scout fragment’-based approach to develop allosteric covalent inhibitors of conformationally dynamic helicase mechanoenzymes
Jared R. Ramsey, Patrick M. M. Shelton, Tyler Heiss, Paul Dominic B. Olinares +12 more
2023bioRxiv16 citations Open access
Semantic Scholar
Structural basis of transcriptional regulation by a nascent RNA element, HK022 putRNA
Seungha Hwang, Paul Dominic B. Olinares, Ji-Min Lee, Jinwoo Kim +3 more
2022Nature Communications16 citations Open access
Semantic Scholar
KorB switching from DNA-sliding clamp to repressor mediates long-range gene silencing in a multi-drug resistance plasmid
T. McLean, Francisco Balaguer-Pérez, Joshua Chandanani, Christopher M. Thomas +11 more
2025Nature Microbiology15 citations Open access
Semantic Scholar
Structural basis for Lamassu-based antiviral immunity and its evolution from DNA repair machinery
Matthieu Haudiquet, Arpita Chakravarti, Zhiying Zhang, Josephine L. Ramirez +9 more
2025Proceedings of the National Academy of Sciences of the United States of America11 citations Open access
Semantic Scholar
Long-range intramolecular allostery and regulation in the dynein-like AAA protein Mdn1
Keith J. Mickolajczyk, Paul Dominic B. Olinares, Y. Niu, Nan Chen +5 more
2020Proceedings of the National Academy of Sciences of the United States of America11 citations Open access
Semantic Scholar
The MIDAS domain of AAA mechanoenzyme Mdn1 forms catch bonds with two different substrates
Keith J. Mickolajczyk, Paul Dominic B. Olinares, B. Chait, Shi-Xin Liu +1 more
2021bioRxiv10 citations Open access
Semantic Scholar
A nucleotide binding–independent role for γ-tubulin in microtubule capping and cell division
A. Y. Berman, M. Wieczorek, Amol Aher, Paul Dominic B. Olinares +2 more
2023Journal of Cell Biology9 citations Open access
Semantic Scholar
Nanobody Repertoires for Exposing Vulnerabilities of SARS-CoV-2
Fred D. Mast, Peter C. Fridy, Natalia E. Ketaren, Junjie Wang +24 more
2021bioRxiv9 citations Open access
Semantic Scholar
Modi fi ed Clp Protease Complex in the ClpP 3 Null Mutant and Consequences for Chloroplast Development and Function in Arabidopsis 1 [ C ] [ W ] [ OA ]
Jitae Kim, Paul Dominic B. Olinares, Soo-hyun Oh, S. Ghisaura +3 more
20139 citations
Semantic Scholar
Structural basis for Lamassu-based antiviral immunity and its evolution from DNA repair machinery
Matthieu Haudiquet, Arpita Chakravarti, Zhiying Zhang, Josephine L. Ramirez +9 more
2025bioRxiv8 citations Open access
Semantic Scholar
RapA opens the RNA polymerase clamp to disrupt post-termination complexes and prevent cytotoxic R-loop formation
Joshua J. Brewer, Koe Inlow, R. Mooney, Barbara Bosch +7 more
2024bioRxiv6 citations Open access
Semantic Scholar
Structural study on human microbiome-derived polyketide synthases that assemble genotoxic colibactin.
Minjae Kim, Jinwoo Kim, G. Lee, Paul Dominic B. Olinares +9 more
2025Structure5 citations
Semantic Scholar
Molecular switching of a DNA-sliding clamp to a repressor mediates long-range gene silencing
T. McLean, Francisco Balaguer-Pérez, Joshua Chandanani, Christopher M. Thomas +11 more
2024bioRxiv5 citations Open access
Semantic Scholar
Transcription co-inhibition alters drug resistance evolution and enhances Mycobacterium tuberculosis clearance from granulomas
Barbara Bosch, Vanisha Munsamy-Govender, J. Sarathy, M. Lilic +8 more
2025Nature Microbiology4 citations Open access
Semantic Scholar
DnaB and DciA: Mechanisms of Helicase Loading and Translocation on ssDNA
Nicholas Gao, Daniele Mazzoletti, Adele Peng, Paul Dominic B. Olinares +13 more
2024bioRxiv4 citations Open access
Semantic Scholar
DnaB and DciA: mechanisms of helicase loading and translocation on ssDNA
Nicholas Gao, Daniele Mazzoletti, Adele Peng, Paul Dominic B. Olinares +13 more
2025Nucleic Acids Research3 citations Open access
Semantic Scholar

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