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S. Coughlan · SciRah

Researcher profile · Semantic Scholar

S. Coughlan

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S. Coughlan — researcher profile on SciRah

h-index: 28
Works: 92
Citations: 2,782

Most-cited papers

Transmission of drug-resistant HIV-1 is stabilizing in Europe.
J. Vercauteren, A. Wensing, D. A. van de Vijver, J. Albert +27 more
2009Journal of Infectious Diseases267 citations Open access
Semantic Scholar
Analysis of Integrated Virological and Epidemiological Reports of Norovirus Outbreaks Collected within the Foodborne Viruses in Europe Network from 1 July 2001 to 30 June 2006
A. Kroneman, L. Verhoef, J. Harris, H. Vennema +35 more
2008Journal of Clinical Microbiology227 citations Open access
Semantic Scholar
Transmission of HIV Drug Resistance and the Predicted Effect on Current First-line Regimens in Europe
L. Hofstra, N. Sauvageot, Jan Albert, I. Alexiev +31 more
2015Clinical Infectious Diseases161 citations Open access
Semantic Scholar
Tracing the HIV-1 subtype B mobility in Europe: a phylogeographic approach
D. Paraskevis, O. Pybus, G. Magiorkinis, A. Hatzakis +44 more
2009Retrovirology145 citations Open access
Semantic Scholar
Emergence of antiretroviral resistance in HIV-positive women receiving combination antiretroviral therapy in pregnancy
F. Lyons, S. Coughlan, C. Byrne, S. Hopkins +2 more
2005AIDS (London)101 citations Open access
Semantic Scholar
Development of a real-time RT-PCR for the detection of Swine-lineage Influenza A (H1N1) virus infections
M. Carr, R. Gunson, A. Maclean, S. Coughlan +8 more
2009Journal of Clinical Virology96 citations Open access
Semantic Scholar
Human Adenovirus
M. Carr, A. Kajon, Xiao-Yan Lu, L. Dunford +19 more
96 citations
Semantic Scholar
Whole-genome sequencing to track SARS-CoV-2 transmission in nosocomial outbreaks
M. Lucey, Guerrino Macori, N. Mullane, U. Sutton-Fitzpatrick +6 more
2020Clinical Infectious Diseases80 citations Open access
Semantic Scholar
A Multicentre Molecular Analysis of Hepatitis B and Blood-Borne Virus Coinfections in Viet Nam
L. Dunford, M. Carr, J. Dean, Linh Thuy Nguyen +7 more
2012PLoS ONE79 citations Open access
Semantic Scholar
Elevated serum levels of interferon- gamma -inducible protein-10 in patients coinfected with hepatitis C virus and HIV.
B. Roe, S. Coughlan, J. Hassan, A. Grogan +4 more
2007Journal of Infectious Diseases79 citations
Semantic Scholar
Global Dispersal Pattern of HIV Type 1 Subtype CRF01_AE: A Genetic Trace of Human Mobility Related to Heterosexual Sexual Activities Centralized in Southeast Asia.
K. Angelis, J. Albert, I. Mamais, G. Magiorkinis +30 more
2015Journal of Infectious Diseases77 citations Open access
Semantic Scholar
Data quality of 5 years of central norovirus outbreak reporting in the European Network for food-borne viruses.
A. Kroneman, J. Harris, H. Vennema, E. Duizer +32 more
2008Journal of public health70 citations Open access
Semantic Scholar
Hepatitis C Virus in Vietnam: High Prevalence of Infection in Dialysis and Multi-Transfused Patients Involving Diverse and Novel Virus Variants
L. Dunford, M. Carr, J. Dean, A. Waters +13 more
2012PLoS ONE64 citations Open access
Semantic Scholar
The global spread of HIV-1 subtype B epidemic
G. Magiorkinis, K. Angelis, I. Mamais, A. Katzourakis +45 more
2016Infection, Genetics and Evolution61 citations Open access
Semantic Scholar
Rapid viral rebound after 4 years of suppressive therapy in a seronegative HIV-1 infected infant treated from birth.
K. Butler, P. Gavin, S. Coughlan, A. Rochford +5 more
2015The Pediatric Infectious Disease Journal61 citations
Semantic Scholar
Norovirus Genotypes Present in Oysters and in Effluent from a Wastewater Treatment Plant during the Seasonal Peak of Infections in Ireland in 2010
P. Rajko-Nenow, A. Waters, S. Keaveney, J. Flannery +4 more
2013Applied and Environmental Microbiology61 citations Open access
Semantic Scholar
Whole-genome Sequencing to Track Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Transmission in Nosocomial Outbreaks
M. Lucey, Guerrino Macori, N. Mullane, U. Sutton-Fitzpatrick +6 more
2020Clinical Infectious Diseases53 citations Open access
Semantic Scholar
Increase in transmitted resistance to non-nucleoside reverse transcriptase inhibitors among newly diagnosed HIV-1 infections in Europe
D. Frentz, D. A. van de Vijver, A. Abecasis, J. Albert +32 more
2014BMC Infectious Diseases53 citations Open access
Semantic Scholar
Limited cross-border infections in patients newly diagnosed with HIV in Europe
D. Frentz, A. Wensing, J. Albert, D. Paraskevis +33 more
2013Retrovirology46 citations Open access
Semantic Scholar
Suboptimal measles-mumps-rubella vaccination coverage facilitates an imported measles outbreak in ireland.
S. Coughlan, J. Connell, B. Cohen, Li Jin +1 more
2002Clinical Infectious Diseases45 citations Open access
Semantic Scholar
Multiplex real-time PCR for the detection and quantitation of HTLV-1 and HTLV-2 proviral load: addressing the issue of indeterminate HTLV results.
A. Waters, André L. A. Oliveira, S. Coughlan, Carla de Venecia +4 more
2011Journal of Clinical Virology42 citations Open access
Semantic Scholar
Incidence of congenital cytomegalovirus infection in Ireland: implications for screening and diagnosis.
A. Waters, K. Jennings, E. Fitzpatrick, S. Coughlan +4 more
2014Journal of Clinical Virology37 citations
Semantic Scholar
Molecular Epidemiological Evaluation of the Recent Resurgence in Mumps Virus Infections in Ireland
M. Carr, E. Moss, A. Waters, J. Dean +5 more
2010Journal of Clinical Microbiology37 citations Open access
Semantic Scholar
Characterisation of a novel recombination event in the norovirus polymerase gene.
A. Waters, S. Coughlan, W. Hall
2007Virology36 citations Open access
Semantic Scholar
Potential role of asymptomatic kitchen food handlers during a food-borne outbreak of norovirus infection, Dublin, Ireland, March 2009.
N. Nicolay, R. Mcdermott, M. Kelly, M. Gorby +5 more
2011Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin35 citations Open access
Semantic Scholar
First reported cases of human adenovirus serotype 14p1 infection, Ireland, October 2009 to July 2010.
D. O'Flanagan, J. O'Donnell, L. Domegan, F. Fitzpatrick +4 more
2011Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin33 citations Open access
Semantic Scholar
Prevalence of HIV Type 1 Antiretroviral Drug Resistance Mutations in Vietnam: A Multicenter Study
J. Dean, Thu Hong Ta Thi, L. Dunford, M. Carr +6 more
2011AIDS Research and Human Retroviruses31 citations
Semantic Scholar
A dipeptidylpeptidase secreted by Fasciola hepatica
Carlos P. Carmona, Sharon McGonigle, Andrew J. Dowd, Angela M. Smith +3 more
1994Parasitology28 citations
Semantic Scholar
Surveillance of epstein‐barr virus loads in adult liver transplantation: Associations with age, sex, posttransplant times, and transplant indications
K. Schaffer, J. Hassan, A. Staines, S. Coughlan +6 more
2011Liver transplantation27 citations Open access
Semantic Scholar
The role of common viral ocular pathogens in Thygeson’s superficial punctate keratitis
P. Connell, J. O'Reilly, S. Coughlan, L. Collum +1 more
2007British Journal of Ophthalmology26 citations Open access
Semantic Scholar
Treatment-associated polymorphisms in protease are significantly associated with higher viral load and lower CD4 count in newly diagnosed drug-naive HIV-1 infected patients
K. Theys, K. Deforche, J. Vercauteren, Pieter J. K. Libin +31 more
2012Retrovirology24 citations Open access
Semantic Scholar
Genomic Analyses of Human Sapoviruses Detected over a 40-Year Period Reveal Disparate Patterns of Evolution among Genotypes and Genome Regions
K. Tohma, M. Kulka, S. Coughlan, K. Green +1 more
2020Viruses23 citations Open access
Semantic Scholar
Molecular epidemiology of Norovirus strains circulating in Ireland from 2003 to 2004
A. Waters, S. Coughlan, L. Dunford, W. Hall
2006Epidemiology and Infection22 citations Open access
Semantic Scholar
Phenotypic Characterization of Lymphocytes in HCV/HIV Co-infected Patients
B. Roe, S. Coughlan, J. Dean, J. Lambert +4 more
2009Viral immunology21 citations Open access
Semantic Scholar
JC virus in the Irish population: Significant increase of genotype 2 in immunocompromised individuals
K. Schaffer, N. Sheehy, S. Coughlan, C. Bergin +1 more
2006Journal of Neurovirology21 citations
Semantic Scholar
Reactivation of BK polyomavirus in patients with multiple sclerosis receiving natalizumab therapy
R. Lonergan, M. Carr, C. De Gascun, L. Costelloe +8 more
2009Journal of Neurovirology20 citations
Semantic Scholar
Changing patterns of rotavirus strains circulating in Ireland: Re‐emergence of G2P[4] and identification of novel genotypes in Ireland
P. J. Collins, Emily Mulherin, H. O'Shea, O. Cashman +5 more
2015Journal of Medical Virology19 citations
Semantic Scholar
HIV-1 Infection in Cyprus, the Eastern Mediterranean European Frontier: A Densely Sampled Transmission Dynamics Analysis from 1986 to 2012
A. Pineda-Peña, K. Theys, D. C. Stylianou, I. Demetriades +33 more
2018Scientific Reports18 citations Open access
Semantic Scholar
Hepatitis C viral clearance in an intravenous drug-using cohort in the Dublin area
S. Keating, S. Coughlan, J. Connell, B. Sweeney +1 more
2005Irish Journal of Medical Science18 citations Open access
Semantic Scholar
Group A Rotavirus Detection and Genotype Distribution before and after Introduction of a National Immunisation Programme in Ireland: 2015–2019
Z. Yandle, S. Coughlan, J. Dean, G. Tuite +2 more
2020Pathogens17 citations Open access
Semantic Scholar
The potential risks and impact of the start of the 2015–2016 influenza season in the WHO European Region: a rapid risk assessment
Raïssa Tjon-Kon-Fat, T. Meerhoff, Sergejs Nikisins, J. Pires +206 more
2016Influenza and Other Respiratory Viruses17 citations Open access
Semantic Scholar
Lamivudine treatment and outcome in pregnant women with high hepatitis B viral loads
V. Jackson, W. Ferguson, T. Kelleher, M. Lawless +5 more
2015European Journal of Clinical Microbiology and Infectious Diseases17 citations
Semantic Scholar
Alanine dehydrogenase from the psychrophilic bacterium strain PA-43: overexpression, molecular characterization, and sequence analysis
J. Irwin, S. Lynch, S. Coughlan, P. Baker +4 more
2003Extremophiles17 citations
Semantic Scholar
Acute Pulmonary Exacerbation Phenotypes in Patients with Cystic Fibrosis.
S. Carter, A. Franciosi, Kate M. O'Shea, Orla O'Carroll +16 more
2022Annals of the American Thoracic Society15 citations Open access
Semantic Scholar
Detection of hepatitis E RNA in pork products at point of retail in Ireland - Are consumers at risk?
Charlene Bennett, S. Coughlan, Kevin Hunt, F. Butler +4 more
2023Journal of food microbiology13 citations Open access
Semantic Scholar
Establishment of a national database to link epidemiological and molecular data from norovirus outbreaks in Ireland
S. Kelly, B. Foley, L. Dunford, S. Coughlan +8 more
2008Epidemiology and Infection12 citations Open access
Semantic Scholar
Transmission of drug-resistance in Europe is characterized by single mutations and revertants
A. M. J. Wensing, J. Vercauteren, D. A. van de Vijver, J. Albert +21 more
200612 citations
Semantic Scholar
Documented Prevalence of HIV Type 1 Antiretroviral Transmitted Drug Resistance in Ireland from 2004 to 2008
C. De Gascun, A. Waters, C. Regan, J. O'Halloran +5 more
2012AIDS Research and Human Retroviruses11 citations
Semantic Scholar
Effectiveness of 2010/2011 seasonal influenza vaccine in Ireland.
AS Barret, J. Donnell, A. O'Hora, C. Collins +7 more
2012Irish medical journal11 citations
Semantic Scholar
Indirect impact of rotavirus vaccination on viral causes of acute gastroenteritis in the elderly.
Z. Yandle, S. Coughlan, J. Dean, D. Hare +1 more
2021Journal of Clinical Virology10 citations
Semantic Scholar

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