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A. Abecasis · SciRah

Researcher profile · Semantic Scholar

A. Abecasis

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A. Abecasis — researcher profile on SciRah

h-index: 28
Works: 182
Citations: 2,995

Most-cited papers

A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes
V. Fonseca, Pieter J. K. Libin, K. Theys, N. Faria +19 more
2019PLoS Neglected Tropical Diseases86 citations Open access
Semantic Scholar
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable
C. Mavian, Sergei L Kosakovsky Pond, S. Marini, B. Magalis +32 more
2020Proceedings of the National Academy of Sciences of the United States of America73 citations Open access
Semantic Scholar
Concurrent outbreaks of mpox in Africa-an update.
C. Beiras, Emile Malembi, Roser Escrig-Sarreta, S. Ahuka +6 more
2024The Lancet62 citations Open access
Semantic Scholar
VIRULIGN: fast codon-correct alignment and annotation of viral genomes
Pieter J. K. Libin, K. Deforche, A. Abecasis, K. Theys
2018bioRxiv61 citations Open access
Semantic Scholar
The impact of HIV-1 within-host evolution on transmission dynamics.
K. Theys, Pieter J. K. Libin, A. Pineda-Peña, A. Nowé +2 more
2018Current Opinion in Virology49 citations Open access
Semantic Scholar
Determinants of HIV-1 Late Presentation in Patients Followed in Europe
M. Miranda, M. Pingarilho, Victor Pimentel, M. Martins +9 more
2021Pathogens46 citations Open access
Semantic Scholar
Phylogenetic analysis as a forensic tool in HIV transmission investigations
A. Abecasis, M. Pingarilho, A. Vandamme
2017AIDS (London)38 citations Open access
Semantic Scholar
Trends of Transmitted and Acquired Drug Resistance in Europe From 1981 to 2019: A Comparison Between the Populations of Late Presenters and Non-late Presenters
M. Miranda, M. Pingarilho, Victor Pimentel, M. Martins +6 more
2022Frontiers in Microbiology36 citations Open access
Semantic Scholar
A Tale of Three Recent Pandemics: Influenza, HIV and SARS-CoV-2
M. Miranda, M. Pingarilho, Victor Pimentel, A. Torneri +3 more
2022Frontiers in Microbiology34 citations Open access
Semantic Scholar
Determinants of Late HIV Presentation at Ndlavela Health Center in Mozambique
Jeremias Salomão Chone, A. Abecasis, L. Varandas
2022International Journal of Environmental Research and Public Health28 citations Open access
Semantic Scholar
Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology
Tetyana I. Vasylyeva, L. du Plessis, A. Pineda-Peña, D. Kühnert +7 more
2019Journal of Infectious Diseases26 citations Open access
Semantic Scholar
Phylogeography and invasion history of Aedes aegypti, the Dengue and Zika mosquito vector in Cape Verde islands (West Africa)
P. Salgueiro, Célia Serrano, B. Gomes, Joana Alves +3 more
2019Evolutionary Applications26 citations Open access
Semantic Scholar
Epidemic dispersion of HIV and HCV in a population of co-infected Romanian injecting drug users
S. Paraschiv, L. Bănică, I. Nicolae, I. Niculescu +9 more
2017PLoS ONE21 citations Open access
Semantic Scholar
HIV-1 Infection in Cyprus, the Eastern Mediterranean European Frontier: A Densely Sampled Transmission Dynamics Analysis from 1986 to 2012
A. Pineda-Peña, K. Theys, D. C. Stylianou, I. Demetriades +33 more
2018Scientific Reports18 citations Open access
Semantic Scholar
Molecular Epidemiology of HIV-1 Infected Migrants Followed Up in Portugal: Trends between 2001–2017
Victor Pimentel, M. Pingarilho, Daniela Alves, I. Diogo +9 more
2020Viruses17 citations Open access
Semantic Scholar
Increasing Prevalence of HIV-1 Transmitted Drug Resistance in Portugal: Implications for First Line Treatment Recommendations
M. Pingarilho, Victor Pimentel, I. Diogo, S. Fernandes +9 more
2020Viruses16 citations Open access
Semantic Scholar
Tuberculosis care for migrant patients in Portugal: a mixed methods study with primary healthcare providers
A. Tavares, A. García, Ana F. Gama, A. Abecasis +2 more
2019BMC Health Services Research16 citations Open access
Semantic Scholar
Characterization of a large cluster of HIV-1 A1 infections detected in Portugal and connected to several Western European countries
Pedro M. M. Araújo, Alexandre Carvalho, M. Pingarilho, D. Faria +50 more
2019Scientific Reports15 citations Open access
Semantic Scholar
European Cohorts of patients and schools to Advance Response to Epidemics (EuCARE): a cluster randomised interventional and observational study protocol to investigate the relationship between schools and SARS-CoV-2 infection
S. Raimondi, S. Gandini, G. H. Rubio Quintanares, A. Abecasis +16 more
2023BMC Infectious Diseases13 citations Open access
Semantic Scholar
Determinants of HIV-1 Late Presentation in a Cohort of Portuguese HIV-1 Patients
A. Miranda, M. Miranda, M. Pingarilho, Victor Pimentel +6 more
2020AIDS Research and Human Retroviruses13 citations Open access
Semantic Scholar
Adherence to antiretroviral therapy among HIV-1 patients from sub-Saharan Africa: a systematic review.
P. R. Almeida, C. Rafael, Victor Pimentel, A. Abecasis +2 more
2024AIDS Reviews12 citations Open access
Semantic Scholar
Geographic dispersal and genetic diversity of tick-borne phleboviruses (Phenuiviridae, Phlebovirus) as revealed by the analysis of L segment sequences.
Victor Pimentel, Rita Afonso, Mônica Nunes, M. L. Vieira +9 more
2019Ticks and Tick-borne Diseases12 citations
Semantic Scholar
Multiple Class I and Class II Haemophilus ducreyi Strains Cause Cutaneous Ulcers in Children on an Endemic Island
J. Grant, C. González-Beiras, Kristen M Amick, K. Fortney +5 more
2018Clinical Infectious Diseases12 citations Open access
Semantic Scholar
Spectrum of Atazanavir-Selected Protease Inhibitor-Resistance Mutations
S. Rhee, M. Boehm, O. Tarasova, Giulia Di Teodoro +6 more
2022Pathogens11 citations Open access
Semantic Scholar
An Evolutionary Model-Based Approach To Quantify the Genetic Barrier to Drug Resistance in Fast-Evolving Viruses and Its Application to HIV-1 Subtypes and Integrase Inhibitors
K. Theys, Pieter J. K. Libin, K. Van Laethem, A. Abecasis
2019Antimicrobial Agents and Chemotherapy10 citations Open access
Semantic Scholar
Molecular footprints of selective pressure in the neuraminidase gene of currently circulating human influenza subtypes and lineages.
V. Correia, A. Abecasis, H. Rebelo-de-Andrade
2018Virology10 citations Open access
Semantic Scholar
Determinants of vaccine hesitancy among healthcare workers in an international multicenter study within the EuCARE project
Francis Drobniewski, Marcia Ashmi, Dian Kusuma, Raheelah Ahmad +14 more
2025Scientific Reports9 citations Open access
Semantic Scholar
HIV-1 diversity and pre-treatment drug resistance in the era of integrase inhibitor among newly diagnosed ART-naïve adult patients in Luanda, Angola
C. Sebastião, A. Abecasis, Domingos Jandondo, Joana M. K. Sebastião +14 more
2024Scientific Reports9 citations Open access
Semantic Scholar
Determinants of HIV late presentation among men who have sex with men in Portugal (2014–2019): who’s being left behind?
Ricardo Abrantes, Victor Pimentel, M. Miranda, Ana Rita Silva +53 more
2024Frontiers in Public Health8 citations Open access
Semantic Scholar
MARVEL-minimising the emergence and dissemination of HIV-1 drug resistance in Portuguese-speaking African Countries (PALOP): low-cost portable NGS platform for HIV-1 surveillance in Africa
C. Sebastião, M. Pingarilho, Jamila Bathy, Elizângela Bonfim +10 more
2024BMC Infectious Diseases8 citations Open access
Semantic Scholar
Retention in Care and Virological Failure among Adult HIV-Positive Patients on First-Line Antiretroviral Treatment in Maputo, Mozambique
Leonid Joaquim, M. Miranda, Victor Pimentel, Maria R. O. Martins +3 more
2023Viruses8 citations Open access
Semantic Scholar
Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal
S. Seabra, Pieter J. K. Libin, K. Theys, A. Zhukova +14 more
2022Virus Evolution8 citations Open access
Semantic Scholar
Are immigrants more vulnerable to the socioeconomic impact of COVID-19? A cross-sectional study in Amadora Municipality, Lisbon metropolitan area
M. R. O. Martins, A. N. Shaaban, A. Abecasis, Z. Muggli +5 more
2022Frontiers in Public Health8 citations Open access
Semantic Scholar
Differential patterns of postmigration HIV-1 infection acquisition among Portuguese immigrants of different geographical origins
Victor Pimentel, M. Pingarilho, Giordano Sole, Daniela Alves +8 more
2022AIDS (London)7 citations Open access
Semantic Scholar
HIV-1-Transmitted Drug Resistance and Transmission Clusters in Newly Diagnosed Patients in Portugal Between 2014 and 2019
M. Pingarilho, Victor Pimentel, M. Miranda, Ana Rita Silva +52 more
2022Frontiers in Microbiology7 citations Open access
Semantic Scholar
Effectiveness of integrase strand transfer inhibitors in HIV‐infected treatment‐experienced individuals across Europe
B. Rossetti, M. Fabbiani, D. Di Carlo, F. Incardona +10 more
2022HIV Medicine7 citations Open access
Semantic Scholar
Effectiveness of integrase strand transfer inhibitor-based regimens in HIV-infected treatment-naive individuals: results from a European multi-cohort study.
B. Rossetti, M. Fabbiani, D. Di Carlo, F. Incardona +10 more
2021Journal of Antimicrobial Chemotherapy6 citations Open access
Semantic Scholar
A Comparative Proteomic Analysis of Praziquantel-Susceptible and Praziquantel-Resistant Schistosoma mansoni Reveals Distinct Response Between Male and Female Animals
António Pinto-Almeida, T. Mendes, P. Ferreira, A. Abecasis +6 more
2021Frontiers in Tropical Diseases6 citations Open access
Semantic Scholar
The impact of HIV-1 within-host evolution on transmission dynamics
K. Theys, Pieter J. K. Libin, A. Pineda-Peña, A. Nowé +2 more
2017bioRxiv6 citations Open access
Semantic Scholar
Acute malnutrition and food insecurity in Yemen, 2021: Evidence from a two-stage cluster randomised survey in a protracted crisis
Mariana Perez Duque, Abdulwahab Alburhomy, Ali Ahmed, Y. Saleh +8 more
2025PLOS Global Public Health5 citations Open access
Semantic Scholar
Applying Next-Generation Sequencing to Track HIV-1 Drug Resistance Mutations Circulating in Portugal
Victor Pimentel, M. Pingarilho, C. Sebastião, M. Miranda +11 more
2024Viruses5 citations Open access
Semantic Scholar
Accidental Father-to-Son HIV-1 Transmission During the Seroconversion Period
I. Ezeonwumelu, Inês Bártolo, Francisco Martin, A. Abecasis +4 more
2018AIDS Research and Human Retroviruses5 citations Open access
Semantic Scholar
Balancing Equity and Global Health Security Towards a Fair and Effective Pandemic Agreement
E. Renganathan, Fabrizio Tediosi, A. Abecasis, Q. Bassat +8 more
2025International Journal of Public Health4 citations Open access
Semantic Scholar
Wastewater Metavirome Diversity: Exploring Replicate Inconsistencies and Bioinformatic Tool Disparities
A. Santos, M. Nunes, A. Filipa-Silva, V. Pimentel +7 more
2025International Journal of Environmental Research and Public Health4 citations Open access
Semantic Scholar
Dynamics and features of transmission clusters of HIV-1 subtypes in the state of São Paulo, Brazil
Victor Pimentel, A. Pineda-Peña, C. Sebastião, J. L. de Paula +8 more
2024Frontiers in Public Health4 citations Open access
Semantic Scholar
HIV-1 subtype diversity and phylogenetic insight into non-B subtype transmission in Slovenia, 1989-2013.
J. Mlakar, Maja M. Lunar, A. Abecasis, A. Vandamme +5 more
2023Acta Dermatovenerologica Alpina Pannonica et Adriatica4 citations Open access
Semantic Scholar
Analysis of mutational history of multidrug‐resistant genotypes with a mutagenetic tree model
M. Pirkl, J. Büch, C. Devaux, M. Böhm +8 more
2022Journal of Medical Virology4 citations Open access
Semantic Scholar
Phylogeography of hepatitis B virus: The role of Portugal in the early dissemination of HBV worldwide
R. Marcelino, I. Ezeonwumelu, A. Janeiro, P. Mimoso +8 more
2022PLoS ONE4 citations Open access
Semantic Scholar
Emerging patterns in HIV integrase resistance
Margarida Veloso, Marta Ribeiro, J. Cabañas, F. Gonçalves +7 more
2025AIDS (London)3 citations Open access
Semantic Scholar
Susceptibility to Lenacapavir Among Newly Diagnosed HIV‐Positive Patients Followed Up in Mozambique That Presented With Primary Antiretroviral Resistance to Other Classes
C. Sebastião, Jamila Bathy, T. Nhampossa, A. Santos +11 more
2025Journal of Medical Virology3 citations Open access
Semantic Scholar

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A. Vandamme×13
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