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Aaron P. Ragsdale · SciRah

Researcher profile · Semantic Scholar

Aaron P. Ragsdale

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Aaron P. Ragsdale — researcher profile on SciRah

h-index: 19
Works: 46
Citations: 1,764

Most-cited papers

Efficient ancestry and mutation simulation with msprime 1.0
F. Baumdicker, Gertjan Bisschop, Daniel Goldstein, Graham Gower +28 more
2021bioRxiv437 citations Open access
Semantic Scholar
Inferring the Joint Demographic History of Multiple Populations: Beyond the Diffusion Approximation
Julien Jouganous, W. Long, Aaron P. Ragsdale, S. Gravel
2017Genetics263 citations Open access
Semantic Scholar
A community-maintained standard library of population genetic models
J. Adrion, Christopher B. Cole, N. Dukler, Jared G. Galloway +25 more
2019bioRxiv180 citations Open access
Semantic Scholar
A weakly structured stem for human origins in Africa
Aaron P. Ragsdale, Timothy D. Weaver, E. Atkinson, E. Hoal +3 more
2022bioRxiv108 citations Open access
Semantic Scholar
Models of archaic admixture and recent history from two-locus statistics
Aaron P. Ragsdale, S. Gravel
2018bioRxiv79 citations Open access
Semantic Scholar
Genomic inferences of domestication events are corroborated by written records in Brassica rapa
Xinshuai Qi, Hong An, Aaron P. Ragsdale, T. E. Hall +3 more
2017bioRxiv70 citations Open access
Semantic Scholar
Accounting for long-range correlations in genome-wide simulations of large cohorts
Dominic Nelson, Jerome Kelleher, Aaron P. Ragsdale, Claudia Moreau +2 more
2020PLoS Genetics62 citations Open access
Semantic Scholar
Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations
M. E. Lauterbur, M. I. A. Cavassim, Ariella L. Gladstein, Graham Gower +38 more
2023bioRxiv59 citations Open access
Semantic Scholar
Demes: a standard format for demographic models
Graham Gower, Aaron P. Ragsdale, Gertjan Bisschop, Ryan N. Gutenkunst +6 more
2022bioRxiv56 citations Open access
Semantic Scholar
Brassica rapa Domestication: Untangling Wild and Feral Forms and Convergence of Crop Morphotypes
A. McAlvay, Aaron P. Ragsdale, Makenzie E. Mabry, Xinshuai Qi +5 more
2021bioRxiv51 citations Open access
Semantic Scholar
Nonparametric coalescent inference of mutation spectrum history and demography
William S. DeWitt, K. Harris, Aaron P. Ragsdale, Kelley Harris
2020Proceedings of the National Academy of Sciences of the United States of America51 citations Open access
Semantic Scholar
Unbiased estimation of linkage disequilibrium from unphased data
Aaron P. Ragsdale, S. Gravel
2019bioRxiv41 citations Open access
Semantic Scholar
Sloppiness and the Geometry of Parameter Space
B. Mannakee, Aaron P. Ragsdale, M. Transtrum, Ryan N. Gutenkunst
201638 citations
Semantic Scholar
Inferring Genome-Wide Correlations of Mutation Fitness Effects between Populations
Xin Huang, Alyssa Lyn Fortier, Alec J. Coffman, Travis J. Struck +5 more
2019Molecular biology and evolution36 citations Open access
Semantic Scholar
Inferring Demographic History Using Two-Locus Statistics
Aaron P. Ragsdale, Ryan N. Gutenkunst
2017Genetics33 citations Open access
Semantic Scholar
Perspective: Genomic inference using diffusion models and the allele frequency spectrum
Aaron P. Ragsdale, Claudia Moreau, S. Gravel
2018bioRxiv32 citations Open access
Semantic Scholar
Demographic Modeling of Admixed Latin American Populations from Whole Genomes
Santiago G. Medina-Muñoz, Diego Ortega-Del Vecchyo, L. Cruz-Hervert, L. Ferreyra-Reyes +3 more
2023bioRxiv21 citations Open access
Semantic Scholar
Triallelic Population Genomics for Inferring Correlated Fitness Effects of Same Site Nonsynonymous Mutations
Aaron P. Ragsdale, Alec J. Coffman, Ping-Hsun Hsieh, Travis J. Struck +1 more
2016Genetics20 citations Open access
Semantic Scholar
Lessons learned from bugs in models of human history
Aaron P. Ragsdale, Dominic Nelson, S. Gravel, Jerome Kelleher
2020bioRxiv19 citations Open access
Semantic Scholar
Local fitness and epistatic effects lead to distinct patterns of linkage disequilibrium in protein-coding genes
Aaron P. Ragsdale
2022bioRxiv12 citations Open access
Semantic Scholar
Archaic introgression and the distribution of shared variation under stabilizing selection
Aaron P. Ragsdale
2024bioRxiv11 citations Open access
Semantic Scholar
Accessible, realistic genome simulation with selection using stdpopsim
Graham Gower, Nathaniel S. Pope, Murillo F. Rodrigues, S. Tittes +27 more
2025bioRxiv10 citations Open access
Semantic Scholar
Multiple Sources of Uncertainty Confound Inference of Historical Human Generation Times
Aaron P. Ragsdale, Kevin R. Thornton
2023bioRxiv10 citations Open access
Semantic Scholar
Diversification, spread, and admixture of octoploid strawberry in the Western Hemisphere
Kevin A. Bird, Michael A. Hardigan, Aaron P. Ragsdale, S. Knapp +2 more
2021bioRxiv10 citations Open access
Semantic Scholar
Assumptions about frequency-dependent architectures of complex traits bias measures of functional enrichment
Shadi Zabad, Aaron P. Ragsdale, R. Sun, Yue Li +1 more
2020bioRxiv10 citations Open access
Semantic Scholar
Population-scale Ancestral Recombination Graphs with tskit 1.0
Ben Jeffery, Yan Wong, Kevin Thornton, Georgia Tsambos +48 more
2026arXiv.org8 citations
Semantic Scholar
Can we distinguish modes of selective interactions using linkage disequilibrium?
Aaron P. Ragsdale
20216 citations Open access
Semantic Scholar
A model for background selection in non-equilibrium populations
G. Barroso, Aaron P. Ragsdale
2025bioRxiv5 citations Open access
Semantic Scholar
Population histories of the Indigenous Adivasi and Sinhalese from Sri Lanka using whole genomes
Jose A. Urban Aragon, Esha Bandyopadhyay, Amali S. Fernando, Constanza de la Fuente Castro +14 more
2025Current Biology5 citations Open access
Semantic Scholar
Nationwide genomic biobank in Mexico unravels demographic history and complex trait architecture from 6,057 individuals
M. Sohail, A. Chong, Consuelo D. Quinto-Cortés, María J. Palma-Martínez +24 more
2022bioRxiv5 citations Open access
Semantic Scholar
DFEnitely different: Genome-wide characterization of differences in mutation fitness effects between populations
Alyssa Lyn Fortier, Alec J. Coffman, Travis J. Struck, Megan N. Irby +3 more
2019bioRxiv4 citations Open access
Semantic Scholar
Publisher Correction: A weakly structured stem for human origins in Africa
Aaron P. Ragsdale, Timothy D. Weaver, E. Atkinson, E. Hoal +3 more
2023Nature3 citations Open access
Semantic Scholar
Accessible, Realistic Genome Simulation with Selection Using stdpopsim
Graham Gower, Nathaniel S. Pope, Murillo F. Rodrigues, S. Tittes +27 more
2025Molecular biology and evolution2 citations Open access
Semantic Scholar
Fitness consequences of sex chromosome aneuploidy in Drosophila melanogaster
Elizabeth R Makovec, Caitlin C Kestell, Kayla K Janke, E. Carter +2 more
2025PLoS Genetics2 citations Open access
Semantic Scholar
Mean fitness is maximized in small populations under stabilizing selection on highly polygenic traits
Aaron P. Ragsdale
2025bioRxiv2 citations
Semantic Scholar
GHIST 2024: The First Genomic History Inference Strategies Tournament
Travis J. Struck, Andrew H. Vaughn, Austin Daigle, Dylan D Ray +13 more
2025Molecular biology and evolution2 citations
Semantic Scholar
A Path Integral Approach for Allele Frequency Dynamics Under Polygenic Selection
Nathan W Anderson, Lloyd Kirk, J. Schraiber, Aaron P. Ragsdale
2024bioRxiv2 citations Open access
Semantic Scholar
Coupling Wright-Fisher and coalescent dynamics for realistic simulation of population-scale datasets
Dominic Nelson, Jerome Kelleher, Aaron P. Ragsdale, G. McVean +1 more
2019bioRxiv1 citations Open access
Semantic Scholar
Author response of: A model for background selection in non-equilibrium populations. Round#1
G. Barroso, Aaron P. Ragsdale
2025Peer Community in Evolutionary Biology0 citations Open access
Semantic Scholar
GHIST 2024: The 1st Genomic History Inference Strategies Tournament
Travis J. Struck, Andrew H. Vaughn, Austin Daigle, Dylan D Ray +13 more
2025bioRxiv0 citations Open access
Semantic Scholar
A path integral approach for allele frequency dynamics under polygenic selection.
Nathan W Anderson, Lloyd Kirk, J. Schraiber, Aaron P. Ragsdale
2024Genetics0 citations Open access
Semantic Scholar
Human evolution: Neanderthal footprints in African genomes.
Aaron P. Ragsdale
2023Current Biology0 citations Open access
Semantic Scholar
A community-maintained standard library of 1 population genetic models 2
J. Adrion, Christopher B. Cole, N. Dukler, G. Jared +32 more
20200 citations
Semantic Scholar
Supporting material for : Models of archaic admixture and recent history from two-locus statistics
Aaron P. Ragsdale, S. Gravel
20190 citations
Semantic Scholar
Multi-Allele Population Genomics for Inference of Demography and Natural Selection
Aaron P. Ragsdale
20160 citations
Semantic Scholar
Inferring the correlated fitness effects of nonsynonymous mutations at the same site using triallelic population genomics
Aaron P. Ragsdale, Alec J. Coffman, Ping-Hsun Hsieh, Travis J. Struck +1 more
2015bioRxiv0 citations Open access
Semantic Scholar

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