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F. Baumdicker · SciRah

Researcher profile · Semantic Scholar

F. Baumdicker

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F. Baumdicker — researcher profile on SciRah

h-index: 11
Works: 35
Citations: 1,295

Most-cited papers

Efficient ancestry and mutation simulation with msprime 1.0
F. Baumdicker, Gertjan Bisschop, Daniel Goldstein, Graham Gower +28 more
2021bioRxiv437 citations Open access
Semantic Scholar
panX: pan-genome analysis and exploration
Wei Ding, F. Baumdicker, R. Neher
2016bioRxiv275 citations Open access
Semantic Scholar
A community-maintained standard library of population genetic models
J. Adrion, Christopher B. Cole, N. Dukler, Jared G. Galloway +25 more
2019bioRxiv180 citations Open access
Semantic Scholar
The Infinitely Many Genes Model for the Distributed Genome of Bacteria
F. Baumdicker, W. Hess, P. Pfaffelhuber
2012Genome Biology and Evolution123 citations Open access
Semantic Scholar
Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations
M. E. Lauterbur, M. I. A. Cavassim, Ariella L. Gladstein, Graham Gower +38 more
2023bioRxiv59 citations Open access
Semantic Scholar
The diversity of a distributed genome in bacterial populations
F. Baumdicker, W. Hess, P. Pfaffelhuber
200938 citations Open access
Semantic Scholar
How to choose sets of ancestry informative markers: A supervised feature selection approach
P. Pfaffelhuber, Franziska Grundner-Culemann, Veronika Lipphardt, F. Baumdicker
2019bioRxiv35 citations Open access
Semantic Scholar
The infinitely many genes model with horizontal gene transfer
F. Baumdicker, P. Pfaffelhuber
201321 citations Open access
Semantic Scholar
Neural networks for self-adjusting mutation rate estimation when the recombination rate is unknown
Klara Elisabeth Burger, P. Pfaffelhuber, F. Baumdicker
2021bioRxiv13 citations Open access
Semantic Scholar
Inference of recent admixture using genotype data
P. Pfaffelhuber, Elisabeth Sester-Huss, F. Baumdicker, J. Naue +2 more
2020bioRxiv12 citations Open access
Semantic Scholar
SpacerPlacer: ancestral reconstruction of CRISPR arrays reveals the evolutionary dynamics of spacer deletions
Axel Fehrenbach, A. Mitrofanov, O. Alkhnbashi, R. Backofen +1 more
2024bioRxiv11 citations Open access
Semantic Scholar
Horizontal gene transfer-mediated bacterial strain variation affects host fitness in Drosophila
Yun Wang, F. Baumdicker, P. Schweiger, S. Kuenzel +1 more
2021BMC Biology11 citations Open access
Semantic Scholar
Effectiveness of CRISPR-Cas in sensitizing bacterial populations with plasmid-encoded antimicrobial resistance
Johannes Kippnich, F. Benz, Hildegard Uecker, F. Baumdicker
2025bioRxiv9 citations Open access
Semantic Scholar
Tackling the Pangenome Dilemma Requires the Concerted Analysis of Multiple Population Genetic Processes
F. Baumdicker, Anne Kupczok
2023Genome Biology and Evolution9 citations Open access
Semantic Scholar
Neural posterior estimation for population genetics
Jiseon Min, Yu-Xin Ning, Nathaniel S. Pope, F. Baumdicker +1 more
2025bioRxiv8 citations Open access
Semantic Scholar
Method comparison with repeated measurements — Passing–Bablok regression for grouped data with errors in both variables
F. Baumdicker, Ulrich Hölker
2019Statistics and Probability Letters8 citations Open access
Semantic Scholar
Goldfinder: Unraveling Networks of Gene Co-occurrence and Avoidance in Bacterial Pangenomes
A. Gavriilidou, Emilian Paulitz, Christian Resl, N. Ziemert +2 more
2024bioRxiv7 citations Open access
Semantic Scholar
Comprehensive analysis of CRISPR array repeat mutations reveals subtype-specific patterns and links to spacer dynamics
A. Mitrofanov, C. Beisel, F. Baumdicker, O. Alkhnbashi +1 more
2025bioRxiv6 citations Open access
Semantic Scholar
Inferring ancestry with the hierarchical soft clustering approach tangleGen
Klara Elisabeth Burger, Solveig Klepper, U. von Luxburg, F. Baumdicker
2024bioRxiv5 citations
Semantic Scholar
The complexity of multiple CRISPR arrays in strains with (co-occurring) CRISPR systems
Axel Fehrenbach, A. Mitrofanov, R. Backofen, F. Baumdicker
2025bioRxiv4 citations Open access
Semantic Scholar
Modifiers of mutation rate in selectively fluctuating environments
F. Baumdicker, Elisabeth Sester-Huss, P. Pfaffelhuber
2019Stochastic Processes and their Applications4 citations Open access
Semantic Scholar
An evolutionary approach to predict the orientation of CRISPR arrays
Axel Fehrenbach, A. Mitrofanov, O. Alkhnbashi, R. Backofen +1 more
2025bioRxiv3 citations Open access
Semantic Scholar
Revealing the range of equally likely estimates in the admixture model
C. S. Heinzel, F. Baumdicker, Peter Pfaffelhuber
2025G33 citations Open access
Semantic Scholar
Editorial: Synthetic Microbial Ecology
T. Brüls, F. Baumdicker, H. Smidt
2021Frontiers in Microbiology3 citations Open access
Semantic Scholar
The site frequency spectrum of dispensable genes.
F. Baumdicker
2014Theoretical Population Biology3 citations Open access
Semantic Scholar
Evolution of bacterial genomes under horizontal gene transfer
F. Baumdicker, P. Pfaffelhuber
20113 citations
Semantic Scholar
Revealing the range of maximum likelihood estimates in the admixture model
C. S. Heinzel, F. Baumdicker, Peter Pfaffelhuber
2025bioRxiv2 citations Open access
Semantic Scholar
Gene co-occurrence and its association with phage infectivity in bacterial pangenomes
Anne Kupczok, A. Gavriilidou, Emilian Paulitz, Lucía Guerrero-García +1 more
2025Philosophical transactions of the Royal Society of London. Series B, Biological sciences2 citations Open access
Semantic Scholar
The independent loss model with ordered insertions for the evolution of CRISPR spacers.
F. Baumdicker, Ariana Huebner, P. Pfaffelhuber
2017Theoretical Population Biology2 citations Open access
Semantic Scholar
INTERPRETING CONVOLUTIONAL NEURAL NETWORKS IN POPULATION GENETICS
Huiting Xu, Leon Zong, Dylan D. Ray, Lei Lei +3 more
2025bioRxiv1 citations Open access
Semantic Scholar
Hidden but Expanding Sampling Bias Distorts Prokaryotic Genome Collections
Hannah Götsch, F. Baumdicker
2026bioRxiv0 citations Open access
Semantic Scholar
Horizontal gene transfer-mediated bacterial strain variation affects host fitness
Yun Wang, F. Baumdicker, S. Kuenzel, Fabian Staubach
2020bioRxiv0 citations Open access
Semantic Scholar
Game time: statistical contests in the classroom
S. Doerken, M. Schumacher, F. Baumdicker
20180 citations
Semantic Scholar
Peer Review #2 of "Staphylococcus aureus viewed from the perspective of 40,000+ genomes (v0.1)"
Robert A. Petit, Timothy D. Read, D. Antipov, N. Hartwick +364 more
20180 citations Open access
Semantic Scholar
The ordered independent loss model for the evolution of CRISPR spacers
F. Baumdicker, Ariana Huebner, P. Pfaffelhuber
20170 citations
Semantic Scholar

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