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C. Frioux · SciRah

Researcher profile · Semantic Scholar

C. Frioux

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C. Frioux — researcher profile on SciRah

h-index: 14
Works: 52
Citations: 967

Most-cited papers

Enterosignatures define common bacterial guilds in the human gut microbiome.
C. Frioux, Rebecca Ansorge, Ezgi Özkurt, Chabname Ghassemi Nedjad +4 more
2023Cell Host and Microbe120 citations Open access
Semantic Scholar
Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models
M. Aite, Marie Chevallier, C. Frioux, C. Trottier +11 more
2018PLoS Comput. Biol.111 citations Open access
Semantic Scholar
Dispersal strategies shape persistence and evolution of human gut bacteria
F. Hildebrand, T. Gossmann, C. Frioux, Ezgi Özkurt +6 more
2021Cell Host and Microbe108 citations Open access
Semantic Scholar
Metagenomic assessment of the global diversity and distribution of bacteria and fungi
M. Bahram, Tarquin Netherway, C. Frioux, Pamela Ferretti +4 more
2020Environmental Microbiology96 citations Open access
Semantic Scholar
Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks
S. Prigent, C. Frioux, S. Dittami, S. Thiele +9 more
2017PLoS Comput. Biol.83 citations Open access
Semantic Scholar
From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes
C. Frioux, Dipali Singh, Tamás Korcsmáros, F. Hildebrand
2020Computational and Structural Biotechnology Journal81 citations Open access
Semantic Scholar
Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species
A. Belcour, C. Frioux, M. Aite, A. Bretaudeau +2 more
2020eLife76 citations Open access
Semantic Scholar
Metabolic complementarity between a brown alga and associated cultivable bacteria provide indications of beneficial interactions
Bertille Burgunter-Delamare, H. Kleinjan, C. Frioux, E. Fremy +8 more
2019bioRxiv45 citations Open access
Semantic Scholar
Scalable and exhaustive screening of metabolic functions carried out by microbial consortia
C. Frioux, E. Fremy, C. Trottier, A. Siegel
2018Bioinform.41 citations Open access
Semantic Scholar
Community‐scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing
Klara Cerk, Pablo Ugalde-Salas, Chabname Ghassemi Nedjad, Maxime Lecomte +5 more
2024Microbial Biotechnology28 citations Open access
Semantic Scholar
The genome of Ectocarpus subulatus - A highly stress-tolerant brown alga.
S. Dittami, E. Corre, Loraine Brillet-Guéguen, Agnieszka P. Lipinska +32 more
2020Marine Genomics26 citations Open access
Semantic Scholar
Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus
Delphine Nègre, M. Aite, A. Belcour, C. Frioux +10 more
2019Antioxidants26 citations Open access
Semantic Scholar
Crystal structure and biochemical characterization of a manganese superoxide dismutase from Chaetomium thermophilum.
T. Haikarainen, C. Frioux, L.-Q. Zhnag, Duo-Chuan Li +1 more
2014Biochimica et Biophysica Acta17 citations Open access
Semantic Scholar
Hybrid metabolic network completion
C. Frioux, Torsten Schaub, Sebastian Schellhorn, A. Siegel +1 more
2017Theory and Practice of Logic Programming16 citations Open access
Semantic Scholar
Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks
Julie Laniau, C. Frioux, J. Nicolas, C. Baroukh +5 more
2017PeerJ13 citations Open access
Semantic Scholar
The genome of Ectocarpus subulatus – a highly stress-tolerant brown alga
S. Dittami, E. Corre, Loraine Brillet-Guéguen, Agnieszka P. Lipinska +32 more
2018bioRxiv11 citations Open access
Semantic Scholar
Revealing the dynamics and mechanisms of bacterial interactions in cheese production with metabolic modelling.
Maxime Lecomte, Wenfan Cao, Julie Aubert, D. Sherman +3 more
2024Metabolic Engineering9 citations Open access
Semantic Scholar
Insights into the potential for mutualistic and harmful host–microbe interactions affecting brown alga freshwater acclimation
H. Kleinjan, C. Frioux, Gianmaria Califano, M. Aite +7 more
2022Molecular Ecology8 citations Open access
Semantic Scholar
Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe
A. Belcour, J. Got, M. Aite, Ludovic Delage +7 more
2023Genome Research7 citations Open access
Semantic Scholar
Robustness analysis of metabolic predictions in algal microbial communities based on different annotation pipelines
E. Karimi, Enora Geslain, A. Belcour, C. Frioux +4 more
2021PeerJ6 citations Open access
Semantic Scholar
Using automated reasoning to explore the metabolism of unconventional organisms: a first step to explore host-microbial interactions.
C. Frioux, S. Dittami, A. Siegel
2020Biochemical Society Transactions5 citations Open access
Semantic Scholar
Accurate MAG reconstruction from complex soil microbiome through combined short- and HiFi long-reads metagenomics
Carole Belliardo, N. Maurice, A. Péré, Samuel Mondy +12 more
2026bioRxiv4 citations Open access
Semantic Scholar
Estimating consensus proteomes and metabolic functions from taxonomic affiliations
A. Belcour, Pauline Hamon-Giraud, Alice Mataigne, B. Ruiz +9 more
2025bioRxiv4 citations Open access
Semantic Scholar
A digital twin of bacterial metabolism during cheese production
Maxime Lecomte, Wenfan Cao, J. Aubert, D. Sherman +3 more
2023bioRxiv4 citations Open access
Semantic Scholar
Metage2Metabo: metabolic complementarity applied to genomes of large-scale microbiotas for the identification of keystone species
A. Belcour, C. Frioux, M. Aite, A. Bretaudeau +1 more
2019bioRxiv4 citations Open access
Semantic Scholar
Mapler: a pipeline for assessing assembly quality in taxonomically rich metagenomes sequenced with HiFi reads
N. Maurice, Claire Lemaitre, R. Vicedomini, C. Frioux
2025Bioinform.3 citations Open access
Semantic Scholar
Seed2LP: seed inference in metabolic networks for reverse ecology applications
Chabname Ghassemi Nedjad, Mathieu Bolteau, Lucas Bourneuf, Loïc Paulevé +1 more
2024bioRxiv3 citations Open access
Semantic Scholar
Modeling the emergent metabolic potential of soil microbiomes in Atacama landscapes
C. Andreani-Gerard, Natalia E. Jiménez, Ricardo L. Palma, Coralie Muller +7 more
2024bioRxiv3 citations Open access
Semantic Scholar
Detecting signatures underlying the composition of biological data
A. Duncan, Ko-On Wing, K. Sidorczuk, C. Quince +2 more
2025Nucleic Acids Research2 citations Open access
Semantic Scholar
AuCoMe: inferring and comparing metabolisms across heterogeneous sets of annotated genomes
A. Belcour, J. Got, M. Aite, Ludovic Delage +7 more
2022bioRxiv2 citations Open access
Semantic Scholar
Changing microbial activities during low salinity acclimation in the brown alga Ectocarpus subulatus
H. Kleinjan, Gianmaria Caliafano, M. Aite, E. Fremy +7 more
2021bioRxiv2 citations Open access
Semantic Scholar
MetaNetMap: automatic mapping of metabolomic data onto metabolic networks
Coralie Muller, Juliette Audemard, Sylvain Prigent, C. Frioux
2026bioRxiv1 citations Open access
Semantic Scholar
The genome of Ectocarpus subulatus highlights unique mechanisms for stress tolerance in brown algae
S. Dittami, E. Corre, Loraine Brillet-Guéguen, Noé Pontoizeau +32 more
20181 citations
Semantic Scholar
Handling the heterogeneity of genomic and metabolic networks data within flexible workflows with the PADMet toolbox
Marie Chevallier, M. Aite, J. Got, G. Collet +7 more
20161 citations
Semantic Scholar
From metabolomes to phenotypes: predictive metabolomics across scales.
P. Pétriacq, Sylvain Prigent, A. Bernard, C. Frioux +1 more
2026Journal of Experimental Botany0 citations Open access
Semantic Scholar
Integrating metagenome-scale metabolic modelling and metabolomics to identify biochemical interactions in Microcystis phycospheres
Juliette Audemard, Nicolas Creusot, Julie Leloup, C. Duval +15 more
2026bioRxiv0 citations Open access
Semantic Scholar
NeighborFinder: an R package inferring local microbial network around a species of interest
Mathilde Sola, Adrien Paravel, Sandrine Auger, J. Chatel +7 more
2026bioRxiv0 citations Open access
Semantic Scholar
Accurate MAG reconstruction from a complex soil microbiome through combined short- and HiFi long-reads metagenomics
Carole Belliardo, N. Maurice, A. Péré, Samuel Mondy +12 more
2026Environmental Microbiome0 citations Open access
Semantic Scholar
Prediction of source nutrients for microorganisms using metabolic networks
Olivia Bulka, Chabname Ghassemi Nedjad, Loic Paulev'e, S. Prigent +1 more
20260 citations
Semantic Scholar
Integrating metagenome-scale metabolic models and metabolomics to explore candidate biochemical interactions in cultivated Microcystis phycospheres
Juliette Audemard, Nicolas Creusot, Julie Leloup, C. Duval +15 more
2026ISME Communications0 citations Open access
Semantic Scholar
Hydrogen metabolism shapes gut microbiome into health-associated configurations
Mathilde Sola, A. Hiol, Giacomo Vitali, S. Fromentin +21 more
2026bioRxiv0 citations Open access
Semantic Scholar
Seed Inference in Interacting Microbial Communities Using Combinatorial Optimization
Chabname Ghassemi Nedjad, Sebastián N. Mendoza, C. Frioux, Loïc Paulevé
2025Computational Methods in Systems Biology0 citations Open access
Semantic Scholar
Mapler: Assessing assembly quality in taxonomically rich metagenomes sequenced with HiFi reads
N. Maurice, Claire Lemaitre, R. Vicedomini, C. Frioux
2025bioRxiv0 citations Open access
Semantic Scholar
Accelerating metabolic models evaluation with statistical metamodels: application to Salmonella infection models
C. Frioux, S. Huet, S. Labarthe, Julien Martinelli +4 more
2023ESAIM Proceedings and Surveys0 citations Open access
Semantic Scholar
Author response: Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species
A. Belcour, C. Frioux, M. Aite, A. Bretaudeau +2 more
20200 citations Open access
Semantic Scholar
Investigating host-microbiota cooperation with gap-filling optimization problems. (Étude de la coopération hôte-microbiote par des problèmes d'optimisation basés sur la complétion de réseaux métaboliques)
C. Frioux
20180 citations
Semantic Scholar
Toward the study of metabolic functions in algal holobionts
C. Lippold, C. Trottier, C. Frioux, Marie Chevallier +2 more
20170 citations
Semantic Scholar
New Results - Data integration and pre-processing with semantic-based technologies
M. Aite, Marie Chevallier, O. Dameron, A. Evrard +9 more
20160 citations
Semantic Scholar
Crystal structure of Chaetomium thermophilum MnSOD
T. Haikarainen, C. Frioux, L.-Q. Zhnag, Duo-Chuan Li +1 more
20130 citations
Semantic Scholar
Enhancing Microbial Genome Reconstruction in Complex Environments by combining Short-and Long-read Sequencing
Carole Belliardo, A. Péré, Alain Franc, Jean-Marc Frigerio +8 more
0 citations
Semantic Scholar

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