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F. Hildebrand · SciRah

Researcher profile · Semantic Scholar

F. Hildebrand

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F. Hildebrand — researcher profile on SciRah

h-index: 53
Works: 146
Citations: 24K

Most-cited papers

Structure and function of the global topsoil microbiome
M. Bahram, F. Hildebrand, S. Forslund, Jennifer L. Anderson +17 more
2018Nature2,181 citations Open access
Semantic Scholar
Enterotypes in the landscape of gut microbial community composition
P. Costea, F. Hildebrand, M. Arumugam, F. Bäckhed +25 more
2017Nature Microbiology954 citations Open access
Semantic Scholar
Meta-analysis of the Parkinson’s disease gut microbiome suggests alterations linked to intestinal inflammation
S. Romano, G. Savva, J. Bedarf, I. Charles +2 more
2021npj Parkinson's Disease617 citations Open access
Semantic Scholar
Structure and function of the soil microbiome underlying N2O emissions from global wetlands
M. Bahram, M. Espenberg, J. Pärn, L. Lehtovirta-Morley +14 more
2022Nature Communications224 citations Open access
Semantic Scholar
Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota
R. Tito, Samuel Chaffron, C. Caenepeel, G. Lima-Mendez +11 more
2018Gut192 citations Open access
Semantic Scholar
Towards the biogeography of prokaryotic genes
Luis Pedro Coelho, R. Alves, Álvaro Rodríguez del Río, P. Myers +19 more
2021Nature188 citations Open access
Semantic Scholar
Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture
Rachel Gilroy, A. Ravi, M. Getino, Isabella Pursley +16 more
2021PeerJ182 citations Open access
Semantic Scholar
Life history strategies of soil bacterial communities across global terrestrial biomes
Gabin Piton, S. Allison, M. Bahram, F. Hildebrand +3 more
2023Nature Microbiology170 citations Open access
Semantic Scholar
Plant nutrient-acquisition strategies drive topsoil microbiome structure and function.
M. Bahram, Tarquin Netherway, F. Hildebrand, K. Pritsch +5 more
2020New Phytologist160 citations Open access
Semantic Scholar
Newly designed 16S rRNA metabarcoding primers amplify diverse and novel archaeal taxa from the environment
M. Bahram, S. Anslan, F. Hildebrand, P. Bork +1 more
2018Environmental Microbiology Reports147 citations Open access
Semantic Scholar
Gut microbiota composition is associated with environmental landscape in honey bees
Julia C. Jones, C. Fruciano, F. Hildebrand, Hasan Al Toufalilia +5 more
2017Ecology and Evolution145 citations Open access
Semantic Scholar
Systematic analysis of gut microbiome reveals the role of bacterial folate and homocysteine metabolism in Parkinson's disease.
Dorines Rosario, G. Bidkhori, Sunjae Lee, J. Bedarf +8 more
2021Cell Reports141 citations Open access
Semantic Scholar
Subspecies in the global human gut microbiome
P. Costea, Luis Pedro Coelho, S. Sunagawa, Robin Munch +6 more
2017Molecular Systems Biology133 citations Open access
Semantic Scholar
LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis
Ezgi Özkurt, Joachim Fritscher, N. Soranzo, Duncan Y K Ng +3 more
2021bioRxiv130 citations Open access
Semantic Scholar
Population-level impacts of antibiotic usage on the human gut microbiome
Kihyun Lee, Sébastien Raguideau, K. Sirén, F. Asnicar +5 more
2023Nature Communications126 citations Open access
Semantic Scholar
Enterosignatures define common bacterial guilds in the human gut microbiome.
C. Frioux, Rebecca Ansorge, Ezgi Özkurt, Chabname Ghassemi Nedjad +4 more
2023Cell Host and Microbe120 citations Open access
Semantic Scholar
A computational framework to integrate high-throughput ‘-omics’ datasets for the identification of potential mechanistic links
H. Pedersen, S. Forslund, V. Gudmundsdottir, A. Ø. Petersen +10 more
2018Nature Protocols112 citations
Semantic Scholar
Dispersal strategies shape persistence and evolution of human gut bacteria
F. Hildebrand, T. Gossmann, C. Frioux, Ezgi Özkurt +6 more
2021Cell Host and Microbe108 citations Open access
Semantic Scholar
Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity
Oleksandr M. Maistrenko, D. Mende, M. Luetge, F. Hildebrand +8 more
2020The ISME Journal107 citations Open access
Semantic Scholar
RTK: efficient rarefaction analysis of large datasets
Paul Saary, K. Forslund, P. Bork, F. Hildebrand
2017Bioinform.106 citations Open access
Semantic Scholar
Metagenomic assessment of the global diversity and distribution of bacteria and fungi
M. Bahram, Tarquin Netherway, C. Frioux, Pamela Ferretti +4 more
2020Environmental Microbiology96 citations Open access
Semantic Scholar
From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes
C. Frioux, Dipali Singh, Tamás Korcsmáros, F. Hildebrand
2020Computational and Structural Biotechnology Journal81 citations Open access
Semantic Scholar
A pile of pipelines: an overview of the bioinformatics software for metabarcoding data analyses
Ali Hakimzadeh, Alejandro A. Asbun, D. Albanese, M. Bernard +22 more
2023Molecular Ecology Resources79 citations Open access
Semantic Scholar
Pervasive associations between dark septate endophytic fungi with tree root and soil microbiomes across Europe
Tarquin Netherway, Jan Bengtsson, F. Buegger, Joachim Fritscher +5 more
2024Nature Communications77 citations Open access
Semantic Scholar
Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species
A. Belcour, C. Frioux, M. Aite, A. Bretaudeau +2 more
2020eLife76 citations Open access
Semantic Scholar
Pole-to-Pole Connections: Similarities between Arctic and Antarctic Microbiomes and Their Vulnerability to Environmental Change
Julia Kleinteich, F. Hildebrand, M. Bahram, A. Voigt +11 more
2017Frontiers in Ecology and Evolution74 citations Open access
Semantic Scholar
Antibiotics-induced monodominance of a novel gut bacterial order
F. Hildebrand, L. Moitinho-Silva, S. Blasche, M. Jahn +20 more
2019Gut73 citations Open access
Semantic Scholar
Intestinal Microbiome‐Macrophage Crosstalk Contributes to Cholestatic Liver Disease by Promoting Intestinal Permeability in Mice
Anna Isaacs-Ten, M. Echeandia, Mar Moreno-Gonzalez, A. Brion +9 more
2020Hepatology72 citations Open access
Semantic Scholar
Gut microbiota dysbiosis in Parkinson disease: A systematic review and pooled analysis
Sven Kleine Bardenhorst, E. Cereda, M. Severgnini, M. Barichella +12 more
2023European Journal of Neurology71 citations Open access
Semantic Scholar
Functional diversity of soil microbial communities increases with ecosystem development
T. R. Sveen, M. Viketoft, Jan Bengtsson, J. Strengbom +8 more
2025bioRxiv61 citations Open access
Semantic Scholar
Potential therapeutic implications of histidine catabolism by the gut microbiota in NAFLD patients with morbid obesity
Sergio Quesada-Vázquez, A. Castells-Nobau, J. Latorre, Núria Oliveras-Cañellas +17 more
2023Cell Reports Medicine54 citations Open access
Semantic Scholar
Much ado about nothing? Off-target amplification can lead to false-positive bacterial brain microbiome detection in healthy and Parkinson’s disease individuals
J. Bedarf, N. Beraza, Hassan Khazneh, Ezgi Özkurt +4 more
2021Microbiome54 citations Open access
Semantic Scholar
Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes
Supriya Khedkar, Georgy Smyshlyaev, I. Letunic, Oleksandr M. Maistrenko +8 more
2022Nucleic Acids Research50 citations Open access
Semantic Scholar
Precision enzyme discovery through targeted mining of metagenomic data
S. Ariaeenejad, Javad Gharechahi, Mehdi Foroozandeh Shahraki, Fereshteh Fallah Atanaki +6 more
2024Natural Products and Bioprospecting49 citations Open access
Semantic Scholar
Microbiota Dysbiosis and Gut Barrier Dysfunction Associated with Non-Alcoholic Fatty Liver Disease Are Modulated by a Specific Metabolic Cofactors’ Combination
Sergio Quesada-Vázquez, Caitlin Bone, S. Saha, Iris Triguero +7 more
2022International Journal of Molecular Sciences47 citations Open access
Semantic Scholar
A blueprint for contemporary studies of microbiomes
L. Bindels, Joy E. M. Watts, Kevin R. Theis, Víctor J. Carrión +21 more
2025Microbiome43 citations Open access
Semantic Scholar
Toxic Cyanobacteria in Svalbard: Chemical Diversity of Microcystins Detected Using a Liquid Chromatography Mass Spectrometry Precursor Ion Screening Method
Julia Kleinteich, J. Puddick, S. Wood, F. Hildebrand +4 more
2018Toxins36 citations Open access
Semantic Scholar
Benchmark of Data Processing Methods and Machine Learning Models for Gut Microbiome-Based Diagnosis of Inflammatory Bowel Disease
Ryszard Kubinski, Jean-Yves Djamen-Kepaou, Timur Zhanabaev, Alex Hernandez-Garcia +7 more
2021bioRxiv35 citations Open access
Semantic Scholar
Ice-Age Climate Adaptations Trap the Alpine Marmot in a State of Low Genetic Diversity
T. Gossmann, A. Shanmugasundram, S. Börno, L. Duvaux +19 more
2019Current Biology33 citations Open access
Semantic Scholar
Enrichment of gut microbiome strains for cultivation-free genome sequencing using droplet microfluidics
A. Pryszlak, T. Wenzel, K. Seitz, F. Hildebrand +5 more
2021Cell Reports Methods29 citations Open access
Semantic Scholar
Community‐scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing
Klara Cerk, Pablo Ugalde-Salas, Chabname Ghassemi Nedjad, Maxime Lecomte +5 more
2024Microbial Biotechnology28 citations Open access
Semantic Scholar
Publisher Correction: Enterotypes in the landscape of gut microbial community composition
P. Costea, F. Hildebrand, M. Arumugam, F. Bäckhed +25 more
2018Nature Microbiology27 citations Open access
Semantic Scholar
A prebiotic dietary pilot intervention restores faecal metabolites and may be neuroprotective in Parkinson’s Disease
J. Bedarf, S. Romano, S. S. Heinzmann, A. Duncan +7 more
2025npj Parkinson's Disease26 citations Open access
Semantic Scholar
Plasmid DNA contaminant in molecular reagents
N. Wally, M. Schneider, J. Thannesberger, M. Kastner +8 more
2019Scientific Reports26 citations Open access
Semantic Scholar
IL-17RA signaling provides dual tumor-suppressor function during late-stage colorectal carcinogenesis.
Dominic Denk, Mallika Ramakrishnan, Claire Conche, Charles Pallangyo +13 more
2025Immunity25 citations Open access
Semantic Scholar
Glacier melt-down changes habitat characteristics and unique microbial community composition and physiology in Alpine lakes sediments.
Julia Kleinteich, K. Hanselmann, F. Hildebrand, A. Kappler +1 more
2022FEMS Microbiology Ecology24 citations Open access
Semantic Scholar
Microbial composition and dynamics in environmental samples from a ready-to-eat food production facility with a long-term colonization of Listeria monocytogenes.
M. Diaz, H. Aird, Thanh Le Viet, Ana Victoria Gutiérrez +9 more
2024Food microbiology20 citations Open access
Semantic Scholar
mTAGs: taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA genes
G. Salazar, H. Ruscheweyh, F. Hildebrand, S. Acinas +1 more
2021Bioinform.19 citations Open access
Semantic Scholar
Host genetic variation strongly influences the microbiome structure and function in fungal fruiting‐bodies
M. Pent, Markus Hiltunen, K. Põldmaa, B. Furneaux +4 more
2018Environmental Microbiology18 citations
Semantic Scholar
One year of gluten free diet impacts gut function and microbiome in celiac disease
C. Costigan, F. J. Warren, A. Duncan, C. Hoad +11 more
2024bioRxiv15 citations Open access
Semantic Scholar

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