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Michael Schroeder · SciRah

Researcher profile · Semantic Scholar

Michael Schroeder

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Michael Schroeder — researcher profile on SciRah

h-index: 41
Works: 172
Citations: 11K

Most-cited papers

PLIP: fully automated protein–ligand interaction profiler
Sebastian Salentin, Sven Schreiber, V. J. Haupt, Melissa F. Adasme +1 more
2015Nucleic Acids Res.2,163 citations Open access
Semantic Scholar
PLIP 2021: expanding the scope of the protein–ligand interaction profiler to DNA and RNA
Melissa F. Adasme, Katja L Linnemann, S. Bolz, Florian Kaiser +3 more
2021Nucleic Acids Res.1,801 citations Open access
Semantic Scholar
An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition
G. Tsatsaronis, Georgios Balikas, Prodromos Malakasiotis, Ioannis Partalas +18 more
2015BMC Bioinformatics881 citations Open access
Semantic Scholar
Identification of cavities on protein surface using multiple computational approaches for drug binding site prediction
Zeng-Ming Zhang, Yu Li, B. Lin, Michael Schroeder +1 more
2011Bioinform.325 citations Open access
Semantic Scholar
SuperCYP: a comprehensive database on Cytochrome P450 enzymes including a tool for analysis of CYP-drug interactions
S. Preissner, K. Kroll, M. Dunkel, Christian Senger +6 more
2009Nucleic Acids Res.268 citations Open access
Semantic Scholar
Google Goes Cancer: Improving Outcome Prediction for Cancer Patients by Network-Based Ranking of Marker Genes
C. Winter, G. Kristiansen, S. Kersting, Janine Roy +17 more
2012PLoS Comput. Biol.197 citations Open access
Semantic Scholar
Old friends in new guise: repositioning of known drugs with structural bioinformatics
V. J. Haupt, Michael Schroeder
2011Briefings Bioinform.153 citations Open access
Semantic Scholar
Polypharmacology rescored: protein-ligand interaction profiles for remote binding site similarity assessment.
Sebastian Salentin, V. J. Haupt, Simone Daminelli, Michael Schroeder
2014Progress in Biophysics and Molecular Biology141 citations
Semantic Scholar
Inter-species normalization of gene mentions with GNAT
J. Hakenberg, C. Plake, Robert Leaman, Michael Schroeder +1 more
2008European Conference on Computational Biology140 citations Open access
Semantic Scholar
Drug Promiscuity in PDB: Protein Binding Site Similarity Is Key
V. J. Haupt, Simone Daminelli, Michael Schroeder
2013PLoS ONE137 citations Open access
Semantic Scholar
Drug target prioritization by perturbed gene expression and network information
Zerrin Işık, Christoph Baldow, C. Cannistraci, Michael Schroeder
2015Scientific Reports112 citations Open access
Semantic Scholar
RP101 (brivudine) binds to heat shock protein HSP27 (HSPB1) and enhances survival in animals and pancreatic cancer patients
J. Heinrich, A. Tuukkanen, Michael Schroeder, T. Fahrig +1 more
2011Journal of Cancer Research and Clinical Oncology99 citations Open access
Semantic Scholar
Drug repositioning or target repositioning: A structural perspective of drug-target-indication relationship for available repurposed drugs
D. Parisi, Melissa F. Adasme, Anastasia Sveshnikova, S. Bolz +2 more
2020Computational and Structural Biotechnology Journal96 citations Open access
Semantic Scholar
Toward an Understanding of Pan-Assay Interference Compounds and Promiscuity: A Structural Perspective on Binding Modes
S. Bolz, Melissa F. Adasme, Michael Schroeder
2021Journal of Chemical Information and Modeling95 citations
Semantic Scholar
UniLectin3D, a database of carbohydrate binding proteins with curated information on 3D structures and interacting ligands
François Bonnardel, J. Mariethoz, Sebastian Salentin, X. Robin +4 more
2018Nucleic Acids Res.92 citations Open access
Semantic Scholar
MetaDBSite: a meta approach to improve protein DNA-binding sites prediction
Jing-Na Si, Zeng-Ming Zhang, B. Lin, Michael Schroeder +1 more
2011BMC Systems Biology87 citations Open access
Semantic Scholar
High genomic diversity of multi-drug resistant wastewater Escherichia coli
Norhan Mahfouz, S. Caucci, Eric Achatz, T. Semmler +3 more
2017Scientific Reports79 citations Open access
Semantic Scholar
GoWeb: a semantic search engine for the life science web
H. Dietze, Michael Schroeder
2009BMC Bioinformatics63 citations Open access
Semantic Scholar
New HSP27 inhibitors efficiently suppress drug resistance development in cancer cells
J. Heinrich, Sainitin Donakonda, V. J. Haupt, Petra Lennig +2 more
2016OncoTarget60 citations Open access
Semantic Scholar
Large-scale De Novo Prediction of Physical Protein-Protein Association*
A. Elefsinioti, O. S. Sarac, Anna Hegele, C. Plake +8 more
2011Molecular & Cellular Proteomics56 citations Open access
Semantic Scholar
Drug repositioning through incomplete bi-cliques in an integrated drug-target-disease network.
Simone Daminelli, V. J. Haupt, M. Reimann, Michael Schroeder
2012Integrative Biology55 citations
Semantic Scholar
From malaria to cancer: Computational drug repositioning of amodiaquine using PLIP interaction patterns
Sebastian Salentin, Melissa F. Adasme, J. Heinrich, V. J. Haupt +3 more
2017Scientific Reports50 citations Open access
Semantic Scholar
Automated Patent Categorization and Guided Patent Search using IPC as Inspired by MeSH and PubMed
Daniela A. Eisinger, G. Tsatsaronis, Markus Bundschus, U. Wieneke +1 more
2013Journal of Biomedical Semantics49 citations Open access
Semantic Scholar
A user-centred evaluation framework for the Sealife semantic web browsers
Helen Oliver, Gayo Diallo, E. de Quincey, D. Alexopoulou +8 more
2009BMC Bioinformatics47 citations Open access
Semantic Scholar
Xenopus Meiotic Microtubule-Associated Interactome
V. Gache, P. Waridel, C. Winter, A. Juhem +3 more
2010PLoS ONE46 citations Open access
Semantic Scholar
Semi-automated ontology generation within OBO-Edit
T. Wächter, Michael Schroeder
2010Bioinform.45 citations Open access
Semantic Scholar
Structure-based Drug repositioning: Potential and Limits.
Melissa F. Adasme, D. Parisi, Anastasia Sveshnikova, Michael Schroeder
2020Seminars in Cancer Biology43 citations Open access
Semantic Scholar
Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy
D. Alexopoulou, B. Andreopoulos, H. Dietze, Andreas Doms +5 more
2009BMC Bioinformatics43 citations Open access
Semantic Scholar
Nonlinear machine learning pattern recognition and bacteria-metabolite multilayer network analysis of perturbed gastric microbiome
Claudio Durán, S. Ciucci, A. Palladini, U. Ijaz +15 more
2021Nature Communications39 citations Open access
Semantic Scholar
How to Become a Group Leader? or Modeling Author Types Based on Graph Mining
G. Tsatsaronis, Iraklis Varlamis, Sunna Torge, M. Reimann +3 more
2011International Conference on Theory and Practice of Digital Libraries38 citations
Semantic Scholar
GoGene: gene annotation in the fast lane
C. Plake, Loïc Royer, R. Winnenburg, J. Hakenberg +1 more
2009Nucleic Acids Res.38 citations Open access
Semantic Scholar
MeMotif: a database of linear motifs in α-helical transmembrane proteins
A. Marsico, Kerstin Scheubert, A. Tuukkanen, Andreas Henschel +3 more
2009Nucleic Acids Res.37 citations Open access
Semantic Scholar
Examination of Apoptosis Signaling in Pancreatic Cancer by Computational Signal Transduction Analysis
F. Rückert, G. Dawelbait, C. Winter, A. Hartmann +10 more
2010PLoS ONE36 citations Open access
Semantic Scholar
Network information improves cancer outcome prediction
Janine Roy, C. Winter, Zerrin Işık, Michael Schroeder
2014Briefings Bioinform.35 citations Open access
Semantic Scholar
The structural basis of the genetic code: amino acid recognition by aminoacyl-tRNA synthetases
Florian Kaiser, Sarah Krautwurst, Sebastian Salentin, V. J. Haupt +4 more
2019Scientific Reports34 citations Open access
Semantic Scholar
Computational Drug Repositioning for Chagas Disease Using Protein-Ligand Interaction Profiling
Alfredo Juárez-Saldívar, Michael Schroeder, Sebastian Salentin, V. J. Haupt +8 more
2020International Journal of Molecular Sciences30 citations Open access
Semantic Scholar
Protein interactions in 3D: from interface evolution to drug discovery.
C. Winter, Andreas Henschel, A. Tuukkanen, Michael Schroeder
2012Journal of Structural Biology30 citations
Semantic Scholar
Discovery of Mycobacterium tuberculosis InhA Inhibitors by Binding Sites Comparison and Ligands Prediction
Tanja Stular, Samo Lešnik, Kaja Rožman, J. Schink +12 more
2016Journal of Medicinal Chemistry28 citations Open access
Semantic Scholar
Answering Factoid Questions in the Biomedical Domain
Dirk Weissenborn, G. Tsatsaronis, Michael Schroeder
2013BioASQ@CLEF28 citations
Semantic Scholar
Structure-based drug repositioning explains ibrutinib as VEGFR2 inhibitor
Melissa F. Adasme, D. Parisi, K. Van Belle, Sebastian Salentin +8 more
2019bioRxiv27 citations Open access
Semantic Scholar
Genome-wide expression profiling and functional network analysis upon neuroectodermal conversion of human mesenchymal stem cells suggest HIF-1 and miR-124a as important regulators.
M. Maisel, H. Habisch, Loïc Royer, A. Herr +7 more
2010Experimental Cell Research27 citations
Semantic Scholar
Repositioned Drugs for Chagas Disease Unveiled via Structure-Based Drug Repositioning
Melissa F. Adasme, S. Bolz, Lauren Adelmann, Sebastian Salentin +8 more
2020International Journal of Molecular Sciences26 citations Open access
Semantic Scholar
Prediction of drug gene associations via ontological profile similarity with application to drug repositioning.
Maria Kissa, G. Tsatsaronis, Michael Schroeder
2015Methods25 citations
Semantic Scholar
Computational polypharmacology with text mining and ontologies.
C. Plake, Michael Schroeder
2011Current Pharmaceutical Biotechnology23 citations
Semantic Scholar
Formalizing biomedical concepts from textual definitions
Alina Petrova, Yue Ma, G. Tsatsaronis, Maria Kissa +3 more
2015Journal of Biomedical Semantics22 citations Open access
Semantic Scholar
Correction: Drug Promiscuity in PDB: Protein Binding Site Similarity Is Key
V. J. Haupt, Simone Daminelli, Michael Schroeder
2013PLoS ONE22 citations Open access
Semantic Scholar
Network Compression as a Quality Measure for Protein Interaction Networks
Loïc Royer, M. Reimann, A. Stewart, Michael Schroeder
2012PLoS ONE20 citations Open access
Semantic Scholar
Backbone Brackets and Arginine Tweezers delineate Class I and Class II aminoacyl tRNA synthetases
Florian Kaiser, Sebastian Bittrich, Sebastian Salentin, Christoph Leberecht +4 more
2018bioRxiv19 citations Open access
Semantic Scholar
DOG4DAG: semi-automated ontology generation in OBO-Edit and Protégé
T. Wächter, Götz Fabian, Michael Schroeder
2011Workshop on Semantic Web Applications and Tools for Life Sciences19 citations
Semantic Scholar
Improved mutation tagging with gene identifiers applied to membrane protein stability prediction
R. Winnenburg, C. Plake, Michael Schroeder
2009BMC Bioinformatics19 citations Open access
Semantic Scholar

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