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L. Parfrey · SciRah

Researcher profile · Semantic Scholar

L. Parfrey

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L. Parfrey — researcher profile on SciRah

h-index: 37
Works: 97
Citations: 22K

Most-cited papers

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
P. Yilmaz, L. Parfrey, P. Yarza, J. Gerken +6 more
2013Nucleic Acids Res.3,525 citations Open access
Semantic Scholar
The Impact of the Gut Microbiota on Human Health: An Integrative View
J. Clemente, L. Ursell, L. Parfrey, R. Knight
2012Cell3,484 citations Open access
Semantic Scholar
Decoupling function and taxonomy in the global ocean microbiome
S. Louca, L. Parfrey, M. Doebeli
2016Science3,055 citations
Semantic Scholar
Function and functional redundancy in microbial systems
S. Louca, M. Polz, F. Mazel, Michaeline B. N. Albright +8 more
2018Nature Ecology & Evolution1,952 citations Open access
Semantic Scholar
The revised classification of eukaryotes
S. Adl, Alastair G. B. Simpson, Christopher E. Lane, J. Lukeš +21 more
2012Journal of Eukaryotic Microbiology1,555 citations Open access
Semantic Scholar
Defining the Human Microbiome
L. Ursell, J. Metcalf, L. Parfrey, R. Knight
2012Nutrition reviews1,093 citations Open access
Semantic Scholar
Estimating the timing of early eukaryotic diversification with multigene molecular clocks
L. Parfrey, Daniel J. G. Lahr, Andrew H. Knoll, Laura A. Katz
2011Proceedings of the National Academy of Sciences of the United States of America866 citations Open access
Semantic Scholar
Experimental and analytical tools for studying the human microbiome
J. Kuczynski, C. Lauber, W. Walters, L. Parfrey +3 more
2011Nature reviews genetics694 citations Open access
Semantic Scholar
High taxonomic variability despite stable functional structure across microbial communities
S. Louca, Saulo M. S. Jacques, A. F. Pires, Juliana S. Leal +4 more
2016Nature Ecology &Evolution518 citations
Semantic Scholar
Global biogeography of highly diverse protistan communities in soil
S. Bates, J. Clemente, G. Flores, W. Walters +3 more
2012The ISME Journal459 citations Open access
Semantic Scholar
Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem
S. Louca, M. Doebeli, L. Parfrey
2018Microbiome392 citations Open access
Semantic Scholar
The amphibian skin‐associated microbiome across species, space and life history stages
Jordan G. Kueneman, L. Parfrey, Douglas C. Woodhams, Holly M. Archer +2 more
2014Molecular Ecology353 citations
Semantic Scholar
Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus)
A. Loudon, Douglas C. Woodhams, L. Parfrey, Holly M. Archer +3 more
2013The ISME Journal285 citations Open access
Semantic Scholar
Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life.
L. Parfrey, Jessica R. Grant, Y. I. Tekle, E. Lasek-Nesselquist +4 more
2010Systematic Biology245 citations Open access
Semantic Scholar
Associations between infant fungal and bacterial dysbiosis and childhood atopic wheeze in a nonindustrialized setting
M. Arrieta, Andrea Arévalo, Leah T. Stiemsma, P. Dimitriu +11 more
2017Journal of Allergy and Clinical Immunology238 citations Open access
Semantic Scholar
Microbial Eukaryotes in the Human Microbiome: Ecology, Evolution, and Future Directions
L. Parfrey, W. Walters, R. Knight
2011Front. Microbio.219 citations Open access
Semantic Scholar
A census-based estimate of Earth's bacterial and archaeal diversity
S. Louca, F. Mazel, M. Doebeli, L. Parfrey
2019PLoS Biology192 citations Open access
Semantic Scholar
Evaluating Support for the Current Classification of Eukaryotic Diversity
L. Parfrey, E. Barbero, E. Lasser, M. Dunthorn +3 more
2006PLoS Genetics192 citations Open access
Semantic Scholar
Is Host Filtering the Main Driver of Phylosymbiosis across the Tree of Life?
F. Mazel, K. Davis, A. Loudon, W. Kwong +2 more
2018mSystems177 citations Open access
Semantic Scholar
Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity
L. Parfrey, W. Walters, C. Lauber, J. Clemente +9 more
2014Frontiers in Microbiology176 citations Open access
Semantic Scholar
Human-associated microbial signatures: examining their predictive value
D. Knights, L. Parfrey, Jesse R. Zaneveld, C. Lozupone +1 more
2011Cell Host and Microbe166 citations Open access
Semantic Scholar
The dynamic nature of eukaryotic genomes.
L. Parfrey, D. Lahr, L. A. Katz
2008Molecular biology and evolution156 citations Open access
Semantic Scholar
Asymptomatic Intestinal Colonization with Protist Blastocystis Is Strongly Associated with Distinct Microbiome Ecological Patterns
M. Nieves-Ramírez, O. Partida-Rodríguez, I. Laforest-Lapointe, L. Reynolds +12 more
2018mSystems127 citations Open access
Semantic Scholar
Deconstructing the Bat Skin Microbiome: Influences of the Host and the Environment
Christine V. Avena, L. Parfrey, J. Leff, Holly M. Archer +6 more
2016Frontiers in Microbiology102 citations Open access
Semantic Scholar
Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae
A. Yarragudi, L. Parfrey, R. Morse
2006Nucleic Acids Research87 citations Open access
Semantic Scholar
Bacterial diversification through geological time
S. Louca, Patrick M. Shih, M. Pennell, W. Fischer +2 more
2018Nature Ecology & Evolution86 citations
Semantic Scholar
Spatial and temporal variability of the human microbiota.
L. Parfrey, R. Knight
2012Clinical Microbiology and Infection85 citations Open access
Semantic Scholar
Vertebrate Hosts as Islands: Dynamics of Selection, Immigration, Loss, Persistence, and Potential Function of Bacteria on Salamander Skin
A. Loudon, A. Venkataraman, W. V. Van Treuren, Douglas C. Woodhams +5 more
2016Frontiers in Microbiology76 citations Open access
Semantic Scholar
UniEuk: Time to Speak a Common Language in Protistology!
Cédric Berney, Andreea Ciuprina, Sara J. Bender, J. Brodie +21 more
2017Journal of Eukaryotic Microbiology75 citations Open access
Semantic Scholar
Changes in bacterial and eukaryotic communities during sewage decomposition in Mississippi river water.
A. Korajkic, L. Parfrey, Brian R. McMinn, Y. V. Baeza +3 more
2015Water Research61 citations
Semantic Scholar
Multicellularity arose several times in the evolution of eukaryotes (Response to DOI 10.1002/bies.201100187)
L. Parfrey, D. Lahr
2013Bioessays61 citations
Semantic Scholar
Introduction: The host‐associated microbiome: Pattern, process and function
L. Parfrey, C. Moreau, Jacob A. Russell
2018Molecular Ecology58 citations
Semantic Scholar
Blastocystis Colonization Alters the Gut Microbiome and, in Some Cases, Promotes Faster Recovery From Induced Colitis
Vincent Billy, Zuzana Lhotská, Milan Jirků, Oldřiška Kadlecová +3 more
2021Frontiers in Microbiology57 citations Open access
Semantic Scholar
Diverse Bacteria Utilize Alginate Within the Microbiome of the Giant Kelp Macrocystis pyrifera
Jordan D. Lin, M. Lemay, L. Parfrey
2018Frontiers in Microbiology57 citations Open access
Semantic Scholar
Morphological complexity affects the diversity of marine microbiomes
M. Lemay, Melissa Y. Chen, F. Mazel, K. Hind +4 more
2020The ISME Journal49 citations Open access
Semantic Scholar
Effects of captivity and rewilding on amphibian skin microbiomes
Jordan G. Kueneman, M. Bletz, Matthew H. Becker, B. Gratwicke +12 more
2022Biological Conservation46 citations Open access
Semantic Scholar
Host-Specificity and Core Taxa of Seagrass Leaf Microbiome Identified Across Tissue Age and Geographical Regions
R. Sanders-Smith, B. T. Segovia, Coreen Forbes, M. Hessing-Lewis +4 more
2020Frontiers in Ecology and Evolution39 citations Open access
Semantic Scholar
Meeting Report: Fungal ITS Workshop (October 2012)
S. Bates, S. Ahrendt, Holly M. Bik, T. Bruns +19 more
2013Standards in Genomic Sciences37 citations Open access
Semantic Scholar
Kelp‐associated Microbiota are Structured by Host Anatomy1
M. Lemay, K. Davis, P. Martone, L. Parfrey
2021Journal of Phycology35 citations
Semantic Scholar
Incubation with macroalgae induces large shifts in water column microbiota, but minor changes to the epibiota of co‐occurring macroalgae
Melissa Y. Chen, L. Parfrey
2018Molecular Ecology34 citations
Semantic Scholar
Subulatomonas tetraspora nov. gen. nov. sp. is a member of a previously unrecognized major clade of eukaryotes.
L. A. Katz, Jessica R. Grant, L. Parfrey, A. Gant +4 more
2011Protist34 citations
Semantic Scholar
Molecular Data are Transforming Hypotheses on the Origin and Diversification of Eukaryotes
Y. I. Tekle, L. Parfrey, L. A. Katz
2009BioScience34 citations Open access
Semantic Scholar
Transmission mode and dispersal traits correlate with host specificity in mammalian gut microbes
F. Mazel, A. Guisan, L. Parfrey
2023Molecular Ecology28 citations Open access
Semantic Scholar
Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation
Jesse R. Zaneveld, L. Parfrey, W. V. Van Treuren, C. Lozupone +5 more
2011Trends in Microbiology27 citations Open access
Semantic Scholar
Phylogeny and Ultrastructure of Miliammina fusca: Evidence for Secondary Loss of Calcification in a Miliolid Foraminifer
A. Habura, Susan T. Goldstein, L. Parfrey, S. Bowser
2006Journal of Eukaryotic Microbiology25 citations
Semantic Scholar
Microeukaryotic Communities Associated With the Seagrass Zostera marina Are Spatially Structured
Bianca Trevizan Segovia, R. Sanders-Smith, Emily M. Adamczyk, Coreen Forbes +3 more
2020Journal of Eukaryotic Microbiology24 citations
Semantic Scholar
Successional dynamics of the cultivated kelp microbiome
K. Davis, Logan R. Zeinert, Allison Q Byrne, Jonathan P. Davis +3 more
2023Journal of Phycology23 citations Open access
Semantic Scholar
Wildcards in climate change biology
D. Srivastava, Laura E. Coristine, A. Angert, M. Bontrager +19 more
2021Ecological Monographs22 citations
Semantic Scholar
Genome Dynamics Are Influenced by Food Source in Allogromia laticollaris Strain CSH (Foraminifera)
L. Parfrey, L. A. Katz
2010Genome Biology and Evolution22 citations Open access
Semantic Scholar
Seagrass (Zostera marina) transplant experiment reveals core microbiota and resistance to environmental change
Emily M. Adamczyk, M. O'Connor, L. Parfrey
2022Molecular Ecology19 citations
Semantic Scholar

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