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Bum-Kyu Lee · SciRah

Researcher profile · Semantic Scholar

Bum-Kyu Lee

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Bum-Kyu Lee — researcher profile on SciRah

h-index: 28
Works: 66
Citations: 5,953

Most-cited papers

The accessible chromatin landscape of the human genome
R. Thurman, Eric Rynes, Richard Humbert, J. Vierstra +58 more
2012Nature2,764 citations Open access
Semantic Scholar
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.
Ling-Yun Song, Zhan-Cheng Zhang, L. Grasfeder, A. Boyle +22 more
2011Genome Research532 citations Open access
Semantic Scholar
High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells.
A. Boyle, Ling-Yun Song, Bum-Kyu Lee, D. London +5 more
2011Genome Research344 citations Open access
Semantic Scholar
Heritable Individual-Specific and Allele-Specific Chromatin Signatures in Humans
Ryan McDaniell, Bum-Kyu Lee, Ling-Yun Song, Zheng Liu +14 more
2010Science338 citations Open access
Semantic Scholar
Wide-ranging functions of E2F4 in transcriptional activation and repression revealed by genome-wide analysis
Bum-Kyu Lee, A. Bhinge, V. Iyer
2011Nucleic Acids Research154 citations Open access
Semantic Scholar
Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells.
Bum-Kyu Lee, A. Bhinge, A. Battenhouse, Ryan McDaniell +8 more
2012Genome Research139 citations Open access
Semantic Scholar
Extensive Evolutionary Changes in Regulatory Element Activity during Human Origins Are Associated with Altered Gene Expression and Positive Selection
Yoichiro Shibata, Nathan C. Sheffield, Olivier Fédrigo, Courtney C. Babbitt +11 more
2012PLoS Genetics130 citations Open access
Semantic Scholar
Dendritic cell fate is determined by BCL11A
Gregory C. Ippolito, Joseph D. Dekker, Yu Wang, Bum-Kyu Lee +8 more
2014Proceedings of the National Academy of Sciences of the United States of America126 citations Open access
Semantic Scholar
Genome-wide Studies of CCCTC-binding Factor (CTCF) and Cohesin Provide Insight into Chromatin Structure and Regulation*
Bum-Kyu Lee, V. Iyer
2012Journal of Biological Chemistry105 citations Open access
Semantic Scholar
Production of red pigments byMonascus purpureus in submerged culture
Bum-Kyu Lee, Nonam Park, Hai-Yan Piao, W. Chung
200182 citations
Semantic Scholar
Production of Candida utilis biomass on molasses in different culture types
Bum-Kyu Lee, Joong-Kyun Kim
200173 citations
Semantic Scholar
Yap1 is dispensable for self‐renewal but required for proper differentiation of mouse embryonic stem (ES) cells
Haewon Chung, Bum-Kyu Lee, Nadima Uprety, W. Shen +2 more
2016EMBO Reports69 citations Open access
Semantic Scholar
A set of NF-κB–regulated microRNAs induces acquired TRAIL resistance in Lung cancer
Young-Jun Jeon, Justin D Middleton, Taewan Kim, A. Laganà +14 more
2015Proceedings of the National Academy of Sciences of the United States of America67 citations Open access
Semantic Scholar
Super-enhancer-guided mapping of regulatory networks controlling mouse trophoblast stem cells
Bum-Kyu Lee, Y. Jang, Mijeong Kim, Lucy LeBlanc +5 more
2019Nature Communications63 citations Open access
Semantic Scholar
Quantitative Genetics of CTCF Binding Reveal Local Sequence Effects and Different Modes of X-Chromosome Association
Zhihao Ding, Yunyun Ni, Sander W. Timmer, Bum-Kyu Lee +9 more
2014PLoS Genetics63 citations Open access
Semantic Scholar
Induction of human trophoblast stem-like cells from primed pluripotent stem cells
Y. Jang, Mijeong Kim, Bum-Kyu Lee, Jonghwan Kim
2021bioRxiv59 citations Open access
Semantic Scholar
Arid3a is essential to execution of the first cell fate decision via direct embryonic and extraembryonic transcriptional regulation
Catherine Rhee, Bum-Kyu Lee, S. Beck, Azeen Anjum +4 more
2014Genes & Development59 citations Open access
Semantic Scholar
Bright/Arid3A Acts as a Barrier to Somatic Cell Reprogramming through Direct Regulation of Oct4, Sox2, and Nanog
Melissa Popowski, T. Templeton, Bum-Kyu Lee, Catherine Rhee +8 more
2014Stem Cell Reports55 citations Open access
Semantic Scholar
Mechanobiological Conditioning Enhances Mesenchymal Stem Cell-Induced Vascular Regeneration
Jason Lee, Kayla Henderson, Miles W Massidda, Miguel Armenta-Ochoa +11 more
2021Nature Biomedical Engineering51 citations Open access
Semantic Scholar
A Myc–microRNA network promotes exit from quiescence by suppressing the interferon response and cell-cycle arrest genes
D. Polioudakis, A. Bhinge, Patrick J. Killion, Bum-Kyu Lee +2 more
2013Nucleic Acids Research50 citations Open access
Semantic Scholar
Mass production of Rhodopseudomonas palustris as diet for aquaculture
Joong-Kyun Kim, Bum-Kyu Lee
200049 citations
Semantic Scholar
miRNA-mediated TUSC3 deficiency enhances UPR and ERAD to promote metastatic potential of NSCLC
Young-Jun Jeon, Taewan Kim, Dongju Park, G. Nuovo +21 more
2018Nature Communications47 citations Open access
Semantic Scholar
The oncogene AAMDC links PI3K-AKT-mTOR signaling with metabolic reprograming in estrogen receptor-positive breast cancer
E. Golden, R. Rashwan, Eleanor A. Woodward, Agustin Sgro +28 more
2021Nature Communications46 citations Open access
Semantic Scholar
Yap1 safeguards mouse embryonic stem cells from excessive apoptosis during differentiation
Lucy LeBlanc, Bum-Kyu Lee, Andy C Yu, Mijeong Kim +6 more
2018eLife46 citations Open access
Semantic Scholar
Subtype-specific addiction of the activated B-cell subset of diffuse large B-cell lymphoma to FOXP1
Joseph D. Dekker, Daechan Park, A. Shaffer, H. Kohlhammer +7 more
2016Proceedings of the National Academy of Sciences of the United States of America37 citations Open access
Semantic Scholar
Neutrophil DREAM promotes neutrophil recruitment in vascular inflammation
Jing Li, T. Kumari, A. Barazia, Vishwanath Jha +11 more
2021Journal of Experimental Medicine32 citations Open access
Semantic Scholar
Bcl6a function is required during optic cup formation to prevent p53-dependent apoptosis and colobomata.
Jiwoon Lee, Bum-Kyu Lee, J. M. Gross
2013Human Molecular Genetics30 citations Open access
Semantic Scholar
Super-enhancer-associated transcription factors collaboratively regulate trophoblast-active gene expression programs in human trophoblast stem cells
Mijeong Kim, E. Adu-Gyamfi, Jonghwan Kim, Bum-Kyu Lee
2023Nucleic Acids Research28 citations Open access
Semantic Scholar
Tgif1 Counterbalances the Activity of Core Pluripotency Factors in Mouse Embryonic Stem Cells.
Bum-Kyu Lee, W. Shen, Jiwoon Lee, Catherine Rhee +4 more
2015Cell Reports27 citations Open access
Semantic Scholar
CpG Island-Mediated Global Gene Regulatory Modes in Mouse Embryonic Stem Cells
S. Beck, Bum-Kyu Lee, Catherine Rhee, Jawon Song +2 more
2014Nature Communications27 citations Open access
Semantic Scholar
Fosl1 overexpression directly activates trophoblast-specific gene expression programs in embryonic stem cells
Bum-Kyu Lee, Nadima Uprety, Y. Jang, Scott K Tucker +4 more
2017Stem Cell Research25 citations Open access
Semantic Scholar
Meiosis-specific cohesin complexes display essential and distinct roles in mitotic embryonic stem cell chromosomes
Eui-Hwan Choi, Seobin Yoon, Young Eun Koh, T. Hong +4 more
2022Genome Biology24 citations Open access
Semantic Scholar
Mechanisms of transcription factor-mediated direct reprogramming of mouse embryonic stem cells to trophoblast stem-like cells
Catherine Rhee, Bum-Kyu Lee, S. Beck, Lucy LeBlanc +2 more
2017Nucleic Acids Research24 citations Open access
Semantic Scholar
Production of red pigments byMonascus purpureus in solid-state culture
Bum-Kyu Lee, Hai-Yan Piao, W. Chung
200223 citations
Semantic Scholar
Characterization of denitrifying photosynthetic bacteria isolated from photosynthetic sludge
Joong-Kyun Kim, Bum-Kyu Lee, Sang-hee Kim, Jung-Hye Moon
199921 citations
Semantic Scholar
A MYC-ZNF148-ID1/3 regulatory axis modulating cancer stem cell traits in aggressive breast cancer
Mijeong Kim, Manjot Singh, Bum-Kyu Lee, Moira Hibbs +11 more
2022Oncogenesis19 citations Open access
Semantic Scholar
Implications of CpG islands on chromosomal architectures and modes of global gene regulation
S. Beck, Catherine Rhee, Jawon Song, Bum-Kyu Lee +3 more
2018Nucleic Acids Research18 citations Open access
Semantic Scholar
Pathogen Infection and MORC Proteins Affect Chromatin Accessibility of Transposable Elements and Expression of Their Proximal Genes in Arabidopsis.
Yogendra Bordiya, Yi Zheng, J. Nam, A. Bonnard +6 more
2016Molecular Plant-Microbe Interactions17 citations Open access
Semantic Scholar
Corrected and Republished from: BCL11A Is a Critical Component of a Transcriptional Network That Activates RAG Expression and V(D)J Recombination
Baeck-seung Lee, Bum-Kyu Lee, V. Iyer, B. Sleckman +4 more
2017Molecular and Cellular Biology15 citations Open access
Semantic Scholar
The BCL11A Transcription Factor Directly Activates RAG Gene Expression and V(D)J Recombination
Baeck-seung Lee, Joseph D. Dekker, Bum-Kyu Lee, V. Iyer +4 more
2013Molecular and Cellular Biology14 citations Open access
Semantic Scholar
Limited plasticity of monocyte fate and function associated with epigenetic scripting at the level of progenitors.
Catherine Rhee, Elizabeth W. Scadden, L. Wong, Giulia Schiroli +12 more
2023Blood10 citations Open access
Semantic Scholar
Fbxl19 recruitment to CpG islands is required for Rnf20-mediated H2B mono-ubiquitination
Bum-Kyu Lee, Jiwoon Lee, W. Shen, Catherine Rhee +2 more
2017Nucleic Acids Research10 citations Open access
Semantic Scholar
Chromatin Accessibility Mapping Identifies Mediators of Basal Transcription and Retinoid-Induced Repression of OTX2 in Medulloblastoma
Matthew Wortham, Chang-Cun Guo, Monica Zhang, Ling-Yun Song +6 more
2014PLoS ONE10 citations Open access
Semantic Scholar
Integrating High-Throughput Approaches and in vitro Human Trophoblast Models to Decipher Mechanisms Underlying Early Human Placenta Development
Bum-Kyu Lee, Jonghwan Kim
2021Frontiers in Cell and Developmental Biology7 citations Open access
Semantic Scholar
Arid3a regulates mesoderm differentiation in mouse embryonic stem cells
Melissa Popowski, Bum-Kyu Lee, Catherine Rhee, V. Iyer +1 more
2017Journal of Stem Cell Therapy and Transplantation7 citations Open access
Semantic Scholar
Multi-layered global gene regulation in mouse embryonic stem cells
S. Beck, Bum-Kyu Lee, Jonghwan Kim
2014Cellular and Molecular Life Sciences7 citations Open access
Semantic Scholar
Development of a chloroplast DNA marker for monitoring of transgene introgression in Brassica napus L.
H. Woo, M. Lim, K. Shin, B. A. B. Martins +3 more
2013Biotechnology Letters7 citations
Semantic Scholar
Brd activity regulates Müller glia‐dependent retinal regeneration in zebrafish
Jiwoon Lee, Bum-Kyu Lee, J. M. Gross
2023Glia6 citations
Semantic Scholar
Lymphoid origin of intrinsically activated plasmacytoid dendritic cells in mice
A. M. Araujo, Joseph D. Dekker, Kendra C. Garrison, Zhe Su +11 more
2018bioRxiv3 citations Open access
Semantic Scholar
Metastable Phase Transformation of Beta Titanium Alloys by Slip Mechanism
B. Choe, H. Jang, Bum-Kyu Lee, K. Lim +5 more
20172 citations Open access
Semantic Scholar

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Gregory E. Crawford×8
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Ling-Yun Song×7

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