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Yang Liu · SciRah

Researcher profile · Semantic Scholar

Yang Liu

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Yang Liu — researcher profile on SciRah

h-index: 28
Works: 71
Citations: 3,472

Most-cited papers

HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment
Matthew G. Johnson, E. Gardner, Yang Liu, Rafael Medina +4 more
2016Applications in Plant Sciences727 citations Open access
Semantic Scholar
The hornwort genome and early land plant evolution
Jian Zhang, Xin-Xing Fu, Rui-Qi Li, Xiang Zhao +26 more
2020Nature Plants235 citations Open access
Semantic Scholar
Angiosperm phylogeny inferred from sequences of four mitochondrial genes
Yin-Long Qiu, Libo Li, Bin Wang, Jia-Yu Xue +6 more
2010215 citations Open access
Semantic Scholar
The Cycas genome and the early evolution of seed plants
Yang Liu, Sibo Wang, Linzhou Li, Ting Yang +61 more
2022Nature Plants181 citations Open access
Semantic Scholar
A genome for gnetophytes and early evolution of seed plants
T. Wan, Zhi-ming Liu, Ling-Fei Li, A. Leitch +37 more
2018Nature Plants176 citations Open access
Semantic Scholar
Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes
Yang Liu, Matthew G. Johnson, C. Cox, Rafael Medina +10 more
2019Nature Communications172 citations Open access
Semantic Scholar
Mitochondrial phylogenomics of early land plants: mitigating the effects of saturation, compositional heterogeneity, and codon-usage bias.
Yang Liu, C. Cox, Wei Wang, B. Goffinet
2014Systematic Biology131 citations Open access
Semantic Scholar
Menispermaceae and the diversification of tropical rainforests near the Cretaceous-Paleogene boundary.
Wei Wang, Rosa del C. Ortiz, F. Jacques, Xiao-Guo Xiang +7 more
2012New Phytologist98 citations
Semantic Scholar
350 my of mitochondrial genome stasis in mosses, an early land plant lineage.
Yang Liu, Rafael Medina, B. Goffinet
2014Molecular biology and evolution96 citations
Semantic Scholar
Large-scale phylogenetic analyses reveal fagalean diversification promoted by the interplay of diaspores and environments in the Paleogene
Xiao-Guo Xiang, Wei Wang, Rui-Qi Li, Li Lin +4 more
201481 citations
Semantic Scholar
Phylogenomic delineation of Physcomitrium (Bryophyta: Funariaceae) based on targeted sequencing of nuclear exons and their flanking regions rejects the retention of Physcomitrella, Physcomitridium and Aphanorrhegma
Rafael Medina, Matthew G. Johnson, Yang Liu, N. Wickett +2 more
2019Journal of Systematics and Evolution78 citations Open access
Semantic Scholar
The genome of Magnolia biondii Pamp. provides insights into the evolution of Magnoliales and biosynthesis of terpenoids
Shan-Shan Dong, Min Liu, Yang Liu, Fei Chen +16 more
2021Horticulture Research69 citations Open access
Semantic Scholar
Organellar phylogenomics of an emerging model system: Sphagnum (peatmoss).
A. Shaw, N. Devos, Yang Liu, C. Cox +3 more
2016Annals of Botany65 citations Open access
Semantic Scholar
Phylogenetic inference rejects sporophyte based classification of the Funariaceae (Bryophyta): rapid radiation suggests rampant homoplasy in sporophyte evolution.
Yang Liu, Jessica M. Budke, B. Goffinet
2012Molecular Phylogenetics and Evolution65 citations
Semantic Scholar
The rise of angiosperm-dominated herbaceous floras: Insights from Ranunculaceae
Wei Wang, Li Lin, Xiao-Guo Xiang, Rosa del C. Ortiz +5 more
2016Scientific Reports61 citations Open access
Semantic Scholar
Plastid and nuclear phylogenomic incongruences and biogeographic implications of Magnolia s.l. (Magnoliaceae)
Shan-Shan Dong, Ya-Ling Wang, Nianhe Xia, Yang Liu +9 more
2021Journal of Systematics and Evolution57 citations
Semantic Scholar
The draft mitochondrial genome of Magnolia biondii and mitochondrial phylogenomics of angiosperms
Shan-Shan Dong, Lu Chen, Yang Liu, Ya-Ling Wang +4 more
2020PLoS ONE48 citations Open access
Semantic Scholar
Gymnaconitum, a new genus of Ranunculaceae endemic to the Qinghai-Tibetan Plateau
Wei Wang, Yang Liu, Sheng-Xiang Yu, TIAN-GANG Gao +1 more
201346 citations
Semantic Scholar
Evolutionary dynamism in bryophytes: Phylogenomic inferences confirm rapid radiation in the moss family Funariaceae.
Rafael Medina, Matthew G. Johnson, Yang Liu, N. Wilding +3 more
2018Molecular Phylogenetics and Evolution41 citations Open access
Semantic Scholar
Genomes shed light on the evolution of Begonia, a mega-diverse genus
Ling-Fei Li, Xiao-Li Chen, Dong-Ming Fang, Shan-Shan Dong +39 more
2022New Phytologist40 citations Open access
Semantic Scholar
Comparative Plastome Analysis of Root- and Stem-Feeding Parasites of Santalales Untangle the Footprints of Feeding Mode and Lifestyle Transitions
Xiao-Li Chen, Dong-Ming Fang, Chenyu Wu, Bing Liu +23 more
2019Genome Biology and Evolution39 citations Open access
Semantic Scholar
The chromosome‐scale genomes of Dipterocarpus turbinatus and Hopea hainanensis (Dipterocarpaceae) provide insights into fragrant oleoresin biosynthesis and hardwood formation
Sibo Wang, Hongping Liang, Hongli Wang, Linzhou Li +14 more
2021Plant Biotechnology Journal38 citations Open access
Semantic Scholar
The First Comprehensive Phylogeny of Coptis (Ranunculaceae) and Its Implications for Character Evolution and Classification
Kun-Li Xiang, Shengdan Wu, Sheng-fu Yu, Yang Liu +5 more
2016PLoS ONE35 citations Open access
Semantic Scholar
Mitochondrial genomes of the early land plant lineage liverworts (Marchantiophyta): conserved genome structure, and ongoing low frequency recombination
Shan-Shan Dong, Chaoxian Zhao, Shou-Zhou Zhang, Li Zhang +6 more
2019BMC Genomics34 citations Open access
Semantic Scholar
Comparative Analyses of 3,654 Plastid Genomes Unravel Insights Into Evolutionary Dynamics and Phylogenetic Discordance of Green Plants
Ting Yang, Sunil Kumar Sahu, Lingxiao Yang, Yang Liu +5 more
2022Frontiers in Plant Science33 citations Open access
Semantic Scholar
The Amount of RNA Editing Sites in Liverwort Organellar Genes Is Correlated with GC Content and Nuclear PPR Protein Diversity
Shan-Shan Dong, Chaoxian Zhao, Shou-Zhou Zhang, Hong Wu +9 more
2019Genome Biology and Evolution32 citations Open access
Semantic Scholar
Genome Sequence of Pseudomonas putida Strain SJTE-1, a Bacterium Capable of Degrading Estrogens and Persistent Organic Pollutants
Ru-Bing Liang, Huan Liu, Fei Tao, Yang Liu +3 more
2012Journal of Bacteriology31 citations Open access
Semantic Scholar
Mitochondrial genes from 18 angiosperms fill sampling gaps for phylogenomic inferences of the early diversification of flowering plants
Jia-Yu Xue, Shan-Shan Dong, Ming-Qiang Wang, Tianqiang Song +17 more
2020Journal of Systematics and Evolution29 citations Open access
Semantic Scholar
Recircumscription of Delphinium subg. Delphinium (Ranunculaceae) and implications for its biogeography
Kun-Li Xiang, Z. Aytaç, Yang Liu, Felipe Espinosa +5 more
201729 citations
Semantic Scholar
Construction of DNA Tools for Hyperexpression in Marchantia Chloroplasts
Eftychios Frangedakis, Fernando Guzmán-Chávez, M. Rebmann, K. Markel +9 more
2021ACS Synthetic Biology28 citations Open access
Semantic Scholar
Maternal Inheritance of U’s Triangle and Evolutionary Process of Brassica Mitochondrial Genomes
Jia-Yu Xue, Yue Wang, Min Chen, Shan-Shan Dong +2 more
2020Frontiers in Plant Science27 citations Open access
Semantic Scholar
Genome Sequence of Pseudomonas aeruginosa Strain SJTD-1, a Bacterium Capable of Degrading Long-Chain Alkanes and Crude Oil
Huan Liu, Ru-Bing Liang, Fei Tao, Chenxiao Ma +3 more
2012Journal of Bacteriology25 citations Open access
Semantic Scholar
Diversity, phylogeny and adaptation of bryophytes: insights from genomic and transcriptomic data.
Qing-Hua Wang, Jian Zhang, Yang Liu, Yu Jia +3 more
2022Journal of Experimental Botany24 citations
Semantic Scholar
Assembly and comparative analysis of the complete mitochondrial genome sequence of Sophora japonica ‘JinhuaiJ2’
Yan-Cai Shi, Yang Liu, Shou-Zhou Zhang, R. Zou +4 more
2018PLoS ONE23 citations Open access
Semantic Scholar
New insights into the phylogeny of Burasaieae (Menispermaceae) with the recognition of a new genus and emphasis on the southern Taiwanese and mainland Chinese disjunction.
Wei Wang, Rosa del C. Ortiz, F. Jacques, Shih-Wen Chung +3 more
2017Molecular Phylogenetics and Evolution23 citations
Semantic Scholar
The genome of Acorus deciphers insights into early monocot evolution
Xing Guo, Fang Wang, Dong-Ming Fang, Qiong-Qiong Lin +10 more
2023Nature Communications22 citations Open access
Semantic Scholar
Phylotranscriptomics of liverworts: revisiting the backbone phylogeny and ancestral gene duplications.
Shan-Shan Dong, Jin Yu, Li Zhang, B. Goffinet +1 more
2022Annals of Botany21 citations Open access
Semantic Scholar
Plastid genomes and phylogenomics of liverworts (Marchantiophyta): conserved genome structure but highest relative plastid substitution rate in land plants.
Shan-Shan Dong, Shou-Zhou Zhang, Li Zhang, Hong Wu +2 more
2021Molecular Phylogenetics and Evolution21 citations
Semantic Scholar
Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta)
Jin Yu, Linzhou Li, Sibo Wang, Shan-Shan Dong +6 more
2020bioRxiv17 citations Open access
Semantic Scholar
The Saururus chinensis genome provides insights into the evolution of pollination strategies and herbaceousness in magnoliids
Jia-Yu Xue, Zhen Li, Shuaiya Hu, Shu-min Kao +9 more
2023The Plant Journal16 citations Open access
Semantic Scholar
Chromosome-level genome assembly of Niphotrichum japonicum provides new insights into heat stress responses in mosses
Xuping Zhou, Tao Peng, Yuying Zeng, Yuqing Cai +4 more
2023Frontiers in Plant Science16 citations Open access
Semantic Scholar
Simple sequence repeats in bryophyte mitochondrial genomes
Chao-Xian Zhao, R. Zhu, Yang Liu
2016Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis16 citations
Semantic Scholar
Complete mitochondrial genome sequence of Anthoceros angustus: conservative evolution of the mitogenomes in hornworts
Shan-Shan Dong, Jia-Yu Xue, Shou-Zhou Zhang, Li Zhang +4 more
2018The Bryologist15 citations
Semantic Scholar
Chromosome-Level Genome Assemblies of Two Hypnales (Mosses) Reveal High Intergeneric Synteny
Jin Yu, Yuqing Cai, Yixin Zhu, Yuying Zeng +7 more
2022Genome Biology and Evolution14 citations Open access
Semantic Scholar
Detecting the phylogenetic signal of glacial refugia in a bryodiversity hotspot outside the tropics
Ernest T. Y. Wu, Yang Liu, L. Jennings, Shan-Shan Dong +1 more
2021Diversity and Distributions: A journal of biological invasions and biodiversity14 citations Open access
Semantic Scholar
The systematic position of Meteoriella S. Okamura (Musci) based on molecular and morphological data
Qing-Hua Wang, Yu Jia, Yang Liu, Zhi-Duan Chen
201014 citations
Semantic Scholar
The mitochondrial genomes of bryophytes
Shan-Shan Dong, Yang Liu
202113 citations Open access
Semantic Scholar
Organellar genome, nuclear ribosomal DNA repeat unit, and microsatellites isolated from a small-scale of 454 GS FLX sequencing on two mosses.
Yang Liu, L. Forrest, J. Bainard, Jessica M. Budke +1 more
2013Molecular Phylogenetics and Evolution13 citations
Semantic Scholar
Phylogenetic Relationships Of Two Endemic Genera From East Asia: Trichocoleopsis and Neotrichocolea (Hepaticae)1
Yang Liu, Yu Jia, Wei Wang, Zhi-Duan Chen +2 more
200813 citations Open access
Semantic Scholar
Exploring the impact of RNA editing on mitochondrial phylogenetic analyses in liverworts, an early land plant lineage
Shan-Shan Dong, Hong-Lei Li, B. Goffinet, Yang Liu
2020Journal of Systematics and Evolution12 citations
Semantic Scholar

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