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Ziwen He · SciRah

Researcher profile · Semantic Scholar

Ziwen He

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Ziwen He — researcher profile on SciRah

h-index: 22
Works: 69
Citations: 1,782

Most-cited papers

Two Evolutionary Histories in the Genome of Rice: the Roles of Domestication Genes
Ziwen He, Wei-Wei Zhai, Hai-jun Wen, T. Tang +6 more
2011PLoS Genetics202 citations Open access
Semantic Scholar
Speciation with gene flow via cycles of isolation and migration: insights from multiple mangrove taxa
Ziwen He, Xinnian Li, Ming Yang, Xinfeng Wang +4 more
2018bioRxiv138 citations Open access
Semantic Scholar
Evolution of coastal forests based on a full set of mangrove genomes
Ziwen He, Xiao Feng, Qi-Pian Chen, Liangwei Li +23 more
2022Nature Ecology & Evolution114 citations
Semantic Scholar
The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole-genome sequencing
Shaohua Xu, Ziwen He, Zhang Zhang, Zixiao Guo +13 more
2017National Science Review113 citations Open access
Semantic Scholar
Genome-Wide Convergence during Evolution of Mangroves from Woody Plants
Shaohua Xu, Ziwen He, Zixiao Guo, Zhang Zhang +4 more
2017Molecular biology and evolution83 citations Open access
Semantic Scholar
Convergent adaptive evolution in marginal environments: unloading transposable elements as a common strategy among mangrove genomes.
Haomin Lyu, Ziwen He, Chung-I Wu, S. Shi
2018New Phytologist82 citations
Semantic Scholar
Genomic Convergence in the Adaptation to Extreme Environments
Shaohua Xu, Jiayan Wang, Zixiao Guo, Ziwen He +1 more
2020Plant Communications77 citations Open access
Semantic Scholar
Convergent adaptation of the genomes of woody plants at the land–sea interface
Ziwen He, Shaohua Xu, Zhang Zhang, Wu-Xia Guo +5 more
2020National Science Review66 citations Open access
Semantic Scholar
Genomic evidence for rediploidization and adaptive evolution following the whole-genome triplication
Xiao Feng, Qi-Pian Chen, Weihong Wu, Jiexin Wang +8 more
2024Nature Communications62 citations Open access
Semantic Scholar
Genomic insights into molecular adaptation to intertidal environments in the mangrove Aegiceras corniculatum.
Xiao Feng, Guo-Hong Li, Shaohua Xu, Weihong Wu +7 more
2021New Phytologist57 citations Open access
Semantic Scholar
Extremely low genetic diversity across mangrove taxa reflects past sea level changes and hints at poor future responses
Zixiao Guo, Xinnian Li, Ziwen He, Yuchen Yang +6 more
2018Global Change Biology56 citations
Semantic Scholar
Genes and speciation: is it time to abandon the biological species concept?
Xinfeng Wang, Ziwen He, S. Shi, Chung-I Wu
2019National Science Review54 citations Open access
Semantic Scholar
The beneficial effects of Polygonatum sibiricum Red. superfine powder on metabolic hypertensive rats via gut-derived LPS/TLR4 pathway inhibition.
Jie Su, Yajun Wang, Mei-Qiu Yan, Ziwen He +7 more
2022Phytomedicine52 citations Open access
Semantic Scholar
Molecular adaptation to salinity fluctuation in tropical intertidal environments of a mangrove tree Sonneratia alba
Xiao Feng, Shaohua Xu, Jianfang Li, Yuchen Yang +5 more
2020BMC Plant Biology46 citations Open access
Semantic Scholar
Can genomic data alone tell us whether speciation happened with gene flow?
Ming Yang, Ziwen He, S. Shi, Chung-I Wu
2017Molecular Ecology40 citations Open access
Semantic Scholar
Temporal sparse adversarial attack on sequence-based gait recognition
Ziwen He, Wei Wang, Jing Dong, T. Tan
2020Pattern Recognition39 citations Open access
Semantic Scholar
Transferable Sparse Adversarial Attack
Ziwen He, Wei Wang, Jing Dong, T. Tan
2021arXiv.org31 citations
Semantic Scholar
De Novo Assembly of Coding Sequences of the Mangrove Palm (Nypa fruticans) Using RNA-Seq and Discovery of Whole-Genome Duplications in the Ancestor of Palms
Ziwen He, Zhang Zhang, Wu-Xia Guo, Ying Zhang +2 more
2015PLoS ONE29 citations Open access
Semantic Scholar
Transcriptome analyses provide insights into the phylogeny and adaptive evolution of the mangrove fern genus Acrostichum
Zhang Zhang, Ziwen He, Shaohua Xu, Xinnian Li +5 more
2016Scientific Reports27 citations Open access
Semantic Scholar
Two decades of suspect evidence for adaptive molecular evolution—negative selection confounding positive-selection signals
Qi-Pian Chen, Hao Yang, Xiao Feng, Qing-Jian Chen +3 more
2021bioRxiv26 citations Open access
Semantic Scholar
Where whole‐genome duplication is most beneficial: Adaptation of mangroves to a wide salinity range between land and sea
Shaohua Xu, Zixiao Guo, Xiao Feng, Shao Shao +5 more
2021Molecular Ecology25 citations
Semantic Scholar
Pronounced genetic differentiation and recent secondary contact in the mangrove tree Lumnitzera racemosa revealed by population genomic analyses
Jianfang Li, Yuchen Yang, Qi-Pian Chen, Lu Fang +8 more
2016Scientific Reports25 citations Open access
Semantic Scholar
Population genetics in nonmodel organisms: II. natural selection in marginal habitats revealed by deep sequencing on dual platforms.
R. Zhou, Shaoping Ling, Wen-Ming Zhao, N. Osada +12 more
2011Molecular biology and evolution22 citations Open access
Semantic Scholar
The twin-beginnings of COVID-19 in Asia and Europe—one prevails quickly
Yong-Sen Ruan, Hai-jun Wen, Mei Hou, Ziwen He +5 more
2021National Science Review20 citations Open access
Semantic Scholar
Evolution of woody plants to the land‐sea interface – The atypical genomic features of mangroves with atypical phenotypic adaptation
W. Xie, Zixiao Guo, Jiayan Wang, Ziwen He +4 more
2022Molecular Ecology19 citations
Semantic Scholar
Molecular evolution in large steps - Codon substitutions under positive selection
Qing-Jian Chen, Ziwen He, Ao Lan, Xu Shen +2 more
2019bioRxiv19 citations Open access
Semantic Scholar
The emergence of the hyperinvasive vine, Mikania micrantha (Asteraceae), via admixture and founder events inferred from population transcriptomics
Ming Yang, Ziwen He, Ye-Lin Huang, Lu Lu +12 more
2017Molecular Ecology19 citations
Semantic Scholar
Adaptive convergence at the genomic level—prevalent, uncommon or very rare?
Ziwen He, Shaohua Xu, S. Shi
2020National Science Review17 citations Open access
Semantic Scholar
Genomic analysis of Nypa fruticans elucidates its intertidal adaptations and early palm evolution.
Weihong Wu, Xiao Feng, Nan Wang, Shao Shao +9 more
2024Journal of Integrative Plant Biology16 citations Open access
Semantic Scholar
Expansion and adaptive evolution of the WRKY transcription factor family in Avicennia mangrove trees
Xiao Feng, Guo-Hong Li, Weihong Wu, Haomin Lyu +5 more
2023Marine Life Science & Technology16 citations Open access
Semantic Scholar
Population Differentiation and Demographic History of the Cycas taiwaniana Complex (Cycadaceae) Endemic to South China as Indicated by DNA Sequences and Microsatellite Markers
Xin-Hui Wang, Jie Li, Li-Min Zhang, Ziwen He +3 more
2019Frontiers in Genetics15 citations Open access
Semantic Scholar
Estimating DNA polymorphism from next generation sequencing data with high error rate by dual sequencing applications
Ziwen He, Xinnian Li, Shaoping Ling, Yun-Xin Fu +3 more
2013BMC Genomics15 citations Open access
Semantic Scholar
Adaptation in Unstable Environments and Global Gene Losses: Small but Stable Gene Networks by the May–Wigner Theory
Shaohua Xu, Shao Shao, Xiao Feng, Sen Li +9 more
2024Molecular biology and evolution13 citations Open access
Semantic Scholar
Extensive gene flow in secondary sympatry after allopatric speciation
Xinfeng Wang, Ziwen He, Zixiao Guo, Ming Yang +7 more
2022National Science Review13 citations Open access
Semantic Scholar
Sympatric or micro-allopatric speciation in a glacial lake? Genomic islands support neither
Ning Sun, Lian-Dong Yang, Fei Tian, Honghui Zeng +13 more
2022National Science Review12 citations Open access
Semantic Scholar
Genome Sequencing Analysis of Scleromitrula shiraiana, a Causal Agent of Mulberry Sclerotial Disease With Narrow Host Range
Zhiyuan Lv, Ziwen He, Li-Juan Hao, Xin Kang +5 more
2021Frontiers in Microbiology11 citations Open access
Semantic Scholar
Revisiting ensemble adversarial attack
Ziwen He, Wei Wang, Jing Dong, T. Tan
2022Signal processing. Image communication10 citations
Semantic Scholar
Adaptation to a new environment with pre-adaptive genomic features - Evidence from woody plants colonizing the land-sea interface.
Zixiao Guo, Shaohua Xu, W. Xie, Shao Shao +6 more
2022The Plant Journal9 citations
Semantic Scholar
Replies to the commentaries on the question of ‘Is it time to abandon the biological species concept?’
Chung-I Wu, Xinfeng Wang, Ziwen He, S. Shi
2020National Science Review9 citations Open access
Semantic Scholar
High‐quality genome of a pioneer mangrove Laguncularia racemosa explains its advantages for intertidal zone reforestation
Ranran Zhu, Shao Shao, Wei Xie, Zixiao Guo +6 more
2023Molecular Ecology Resources8 citations
Semantic Scholar
Ciboria carunculoides Suppresses Mulberry Immune Responses Through Regulation of Salicylic Acid Signaling
Zhiyuan Lv, Li-Juan Hao, Bi Ma, Ziwen He +3 more
2021Frontiers in Plant Science8 citations Open access
Semantic Scholar
Development and characterization of microsatellite loci for smooth cordgrass, Spartina alterniflora (Poaceae)
Wu-Xia Guo, Ye-Lin Huang, Ziwen He, Yu-Bin Yan +2 more
2013Applications in Plant Sciences7 citations Open access
Semantic Scholar
Two decades of suspect evidence for adaptive DNA-sequence evolution – Less negative selection misconstrued as positive selection
Qi-Pian Chen, Ziwen He, Xiao Feng, Hao Yang +2 more
20206 citations Open access
Semantic Scholar
Identification and characterization of evolutionarily conserved alternative splicing events in a mangrove genus Sonneratia
Yuchen Yang, Wu-Xia Guo, Xu Shen, Jianfang Li +5 more
2018Scientific Reports6 citations Open access
Semantic Scholar
Seawater tides shaped mangrove sediment a bacterial community drastically distinct from supratidal land soil
Rufan Zhang, Lu Liu, Yuchen Yang, Shaohua Xu +4 more
2025BMC Microbiology5 citations Open access
Semantic Scholar
Standing genetic variation and introgression shape the cryptic radiation of Aquilegia in the mountains of Southwest China
Jun Peng, Ziwen He, Zhi‐Qiang Zhang
2025Communications Biology5 citations Open access
Semantic Scholar
Chromosomal-Scale Genome Assemblies of Two Coastal Plant Species, Scaevola taccada and S. hainanensis—Insight into Adaptation Outside of the Common Range
Sen Li, Xiaomeng Mao, Ziwen He, Shaohua Xu +2 more
2023International Journal of Molecular Sciences5 citations Open access
Semantic Scholar
De novo assembly and annotation of the Avicennia officinalis L. transcriptome
Haomin Lyu, Xinnian Li, Zixiao Guo, Ziwen He +1 more
2017Marine Genomics5 citations
Semantic Scholar
Evolution of sea-surfing plant propagule as revealed by the genomes of Heritiera mangroves.
Jiayan Wang, Wei Xie, Fa Si, Ziwen He +4 more
2023The Plant Journal4 citations Open access
Semantic Scholar
The evolution history of an allotetraploid mangrove tree analysed with a new tool Allo4D
Yuan Wang, Yulong Li, Weihong Wu, Shao Shao +5 more
2023Plant Biotechnology Journal4 citations Open access
Semantic Scholar

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