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Chung-I Wu · SciRah

Researcher profile · Semantic Scholar

Chung-I Wu

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Chung-I Wu — researcher profile on SciRah

h-index: 63
Works: 176
Citations: 19K

Most-cited papers

Sperm, but Not Oocyte, DNA Methylome Is Inherited by Zebrafish Early Embryos
Lan Jiang, Jing Zhang, Jing-Jing Wang, Lu Wang +16 more
2013Cell475 citations Open access
Semantic Scholar
Classifying the evolutionary and ecological features of neoplasms
Carlo C. Maley, A. Aktipis, T. Graham, A. Sottoriva +18 more
2017Nature Reviews. Cancer372 citations Open access
Semantic Scholar
The genomics of selection in dogs and the parallel evolution between dogs and humans
Guo-Dong Wang, Wei-Wei Zhai, He-Chuan Yang, Ruo-xi Fan +16 more
2013Nature Communications318 citations Open access
Semantic Scholar
Out of southern East Asia: the natural history of domestic dogs across the world
Guo-Dong Wang, Wei-Wei Zhai, He-Chuan Yang, Lu Wang +12 more
2015Cell Research308 citations Open access
Semantic Scholar
The birth and death of microRNA genes in Drosophila
Jian Lu, Yang Shen, Qingfa Wu, Supriya Kumar +5 more
2008Nature Genetics266 citations
Semantic Scholar
Two Evolutionary Histories in the Genome of Rice: the Roles of Domestication Genes
Ziwen He, Wei-Wei Zhai, Hai-jun Wen, T. Tang +6 more
2011PLoS Genetics202 citations Open access
Semantic Scholar
Evolution under canalization and the dual roles of microRNAs: a hypothesis.
Chung-I Wu, Yang Shen, Tian Tang
2009Genome Research162 citations Open access
Semantic Scholar
Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data
Yong Tao, J. Ruan, Shiou-Hwei Yeh, Xue-Mei Lu +40 more
2011Proceedings of the National Academy of Sciences of the United States of America142 citations Open access
Semantic Scholar
Genomic analysis of snub-nosed monkeys (Rhinopithecus) identifies genes and processes related to high-altitude adaptation
Li Yu, Guo-Dong Wang, J. Ruan, Yong-Bin Chen +29 more
2016Nature Genetics140 citations Open access
Semantic Scholar
Speciation with gene flow via cycles of isolation and migration: insights from multiple mangrove taxa
Ziwen He, Xinnian Li, Ming Yang, Xinfeng Wang +4 more
2018bioRxiv138 citations Open access
Semantic Scholar
Genetic Convergence in the Adaptation of Dogs and Humans to the High-Altitude Environment of the Tibetan Plateau
Guo-Dong Wang, Ruo-xi Fan, Wei-Wei Zhai, Fei Liu +11 more
2014Genome Biology and Evolution117 citations Open access
Semantic Scholar
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
Z. Chong, J. Ruan, Chung-I Wu
2012Bioinform.116 citations
Semantic Scholar
The origin, diversification and adaptation of a major mangrove clade (Rhizophoreae) revealed by whole-genome sequencing
Shaohua Xu, Ziwen He, Zhang Zhang, Zixiao Guo +13 more
2017National Science Review113 citations Open access
Semantic Scholar
Independent Losses of Function in a Polyphenol Oxidase in Rice: Differentiation in Grain Discoloration between Subspecies and the Role of Positive Selection under Domestication[W]
Yan-Chun Yu, T. Tang, Q. Qian, Yong-Hong Wang +6 more
2008The Plant Cell Online98 citations Open access
Semantic Scholar
Poly A- Transcripts Expressed in HeLa Cells
Qingfa Wu, Yeong C. Kim, Jian Lu, Z. Xuan +6 more
2008PLoS ONE92 citations Open access
Semantic Scholar
The Ecology and Evolution of Cancer: The Ultra-Microevolutionary Process.
Chung-I Wu, Hurng-Yi Wang, Shaoping Ling, Xue-Mei Lu
2016Annual Review of Genetics89 citations
Semantic Scholar
Genome-Wide Convergence during Evolution of Mangroves from Woody Plants
Shaohua Xu, Ziwen He, Zixiao Guo, Zhang Zhang +4 more
2017Molecular biology and evolution83 citations Open access
Semantic Scholar
Adaptive evolution of newly emerged micro-RNA genes in Drosophila.
Jian Lu, Yonggui Fu, Supriya Kumar, Yang Shen +4 more
2008Molecular biology and evolution83 citations Open access
Semantic Scholar
Convergent adaptive evolution in marginal environments: unloading transposable elements as a common strategy among mangrove genomes.
Haomin Lyu, Ziwen He, Chung-I Wu, S. Shi
2018New Phytologist82 citations
Semantic Scholar
The evolution of evolvability in microRNA target sites in vertebrates
Jin Xu, Rui Zhang, Yang Shen, Guojing Liu +2 more
2013Genome Research62 citations Open access
Semantic Scholar
Extremely low genetic diversity across mangrove taxa reflects past sea level changes and hints at poor future responses
Zixiao Guo, Xinnian Li, Ziwen He, Yuchen Yang +6 more
2018Global Change Biology56 citations
Semantic Scholar
Genes and speciation: is it time to abandon the biological species concept?
Xinfeng Wang, Ziwen He, S. Shi, Chung-I Wu
2019National Science Review54 citations Open access
Semantic Scholar
Adaptive evolution in humans revealed by the negative correlation between the polymorphism and fixation phases of evolution
Jun Gojobori, Hua Tang, J. Akey, Chung-I Wu
2007Proceedings of the National Academy of Sciences of the United States of America50 citations Open access
Semantic Scholar
Genome-wide misexpression of X-linked versus autosomal genes associated with hybrid male sterility.
Xue-Mei Lu, J. Shapiro, C. Ting, Yan Li +9 more
2010Genome Research49 citations Open access
Semantic Scholar
Testing a hypothesis of unidirectional hybridization in plants: Observations on Sonneratia, Bruguiera and Ligularia
R. Zhou, X. Gong, D. Boufford, Chung-I Wu +1 more
2008BMC Evolutionary Biology47 citations Open access
Semantic Scholar
Redundant and incoherent regulations of multiple phenotypes suggest microRNAs’ role in stability control
Zhongqi Liufu, Yixin Zhao, Li Guo, Guangxia Miao +6 more
2017Genome Research43 citations Open access
Semantic Scholar
Codon 104 variation of p53 gene provides adaptive apoptotic responses to extreme environments in mammals of the Tibet plateau
Yang Zhao, Jilong Ren, Ming-yang Wang, Sheng-Ting Zhang +9 more
2013Proceedings of the National Academy of Sciences of the United States of America41 citations Open access
Semantic Scholar
Adverse interactions between micro-RNAs and target genes from different species
T. Tang, Supriya Kumar, Yang Shen, Jian Lu +4 more
2010Proceedings of the National Academy of Sciences of the United States of America41 citations Open access
Semantic Scholar
Can genomic data alone tell us whether speciation happened with gene flow?
Ming Yang, Ziwen He, S. Shi, Chung-I Wu
2017Molecular Ecology40 citations Open access
Semantic Scholar
Exome sequencing identifies frequent mutation of MLL2 in non–small cell lung carcinoma from Chinese patients
Shanye Yin, Jing Yang, Bin Lin, Wenjun Deng +11 more
2014Scientific Reports39 citations Open access
Semantic Scholar
A Locus in Drosophila sechellia Affecting Tolerance of a Host Plant Toxin
E. Hungate, E. Earley, I. Boussy, D. Turissini +5 more
2013Genetics37 citations Open access
Semantic Scholar
Functional conservation of both CDS- and 3'-UTR-located microRNA binding sites between species.
Guojing Liu, Rui Zhang, Jin Xu, Chung-I Wu +1 more
2015Molecular biology and evolution36 citations Open access
Semantic Scholar
Weak Regulation of Many Targets Is Cumulatively Powerful—An Evolutionary Perspective on microRNA Functionality
Yixin Zhao, Xu Shen, T. Tang, Chung-I Wu
2017Molecular biology and evolution35 citations
Semantic Scholar
Functional Conservation of Both CDS- and 3'-UTR-Located MicroRNA Binding Sites between Species.
Guojing Liu, Rui Zhang, Jin Xu, Chung-I Wu +1 more
2015Molecular biology and evolution34 citations Open access
Semantic Scholar
Complex genetic interactions underlying expression differences between Drosophila races: Analysis of chromosome substitutions
Hurng-Yi Wang, Yonggui Fu, M. McPeek, Xue-Mei Lu +5 more
2008Proceedings of the National Academy of Sciences of the United States of America34 citations Open access
Semantic Scholar
Incompatibility and Competitive Exclusion of Genomic Segments between Sibling Drosophila Species
Shu Fang, Roman Yukilevich, Ying Chen, D. Turissini +3 more
2012PLoS Genetics28 citations Open access
Semantic Scholar
Ultrasensitive and high-efficiency screen of de novo low-frequency mutations by o2n-seq
Kaile Wang, Shujuan Lai, Xiaoxu Yang, Tianqi Zhu +3 more
2017Nature Communications27 citations Open access
Semantic Scholar
Decoupled differentiation of gene expression and coding sequence among Drosophila populations.
M. Kohn, J. Shapiro, Chung-I Wu
2008Genes & Genetic Systems26 citations Open access
Semantic Scholar
On the founder effect in COVID-19 outbreaks – How many infected travelers may have started them all?
Yong-Sen Ruan, Zhi-Da Luo, Xiao-Lu Tang, Guanghao Li +5 more
2020National Science Review25 citations Open access
Semantic Scholar
Testing hypotheses on the rate of molecular evolution in relation to gene expression using microRNAs
Yang Shen, Yang Lv, Lei Huang, Wensheng Liu +6 more
2011Proceedings of the National Academy of Sciences of the United States of America25 citations Open access
Semantic Scholar
Small RNA transcriptomes of mangroves evolve adaptively in extreme environments
Ming Wen, Xingqin Lin, Munan Xie, Yushuai Wang +5 more
2016Scientific Reports23 citations Open access
Semantic Scholar
Reminder to deposit DNA sequences
M. Blaxter, A. Danchin, Babis Savakis, K. Fukami-Kobayashi +5 more
2016Science23 citations
Semantic Scholar
Population genetics in nonmodel organisms: II. natural selection in marginal habitats revealed by deep sequencing on dual platforms.
R. Zhou, Shaoping Ling, Wen-Ming Zhao, N. Osada +12 more
2011Molecular biology and evolution22 citations Open access
Semantic Scholar
The Genotype–Phenotype Relationships in the Light of Natural Selection
Han Chen, Chung-I Wu, Xionglei He
2017Molecular biology and evolution21 citations Open access
Semantic Scholar
A New Formulation of Random Genetic Drift and Its Application to the Evolution of Cell Populations.
Yu-Xin Chen, Ding Tong, Chung-I Wu
2017Molecular biology and evolution20 citations Open access
Semantic Scholar
Pseudo-Sanger sequencing: massively parallel production of long and near error-free reads using NGS technology
J. Ruan, Lan Jiang, Z. Chong, Qiang Gong +9 more
2013BMC Genomics20 citations Open access
Semantic Scholar
Molecular evolution in large steps - Codon substitutions under positive selection
Qing-Jian Chen, Ziwen He, Ao Lan, Xu Shen +2 more
2019bioRxiv19 citations Open access
Semantic Scholar
Molecular Evolution in Small Steps under Prevailing Negative Selection: A Nearly Universal Rule of Codon Substitution
Qing-Jian Chen, Ao Lan, Xu Shen, Chung-I Wu
2019bioRxiv19 citations Open access
Semantic Scholar
The emergence of the hyperinvasive vine, Mikania micrantha (Asteraceae), via admixture and founder events inferred from population transcriptomics
Ming Yang, Ziwen He, Ye-Lin Huang, Lu Lu +12 more
2017Molecular Ecology19 citations
Semantic Scholar
The heterogeneity of plasma miRNA profiles in hepatocellular carcinoma patients and the exploration of diagnostic circulating miRNAs for hepatocellular carcinoma
Xue-Feng Bai, Zhenzhen Liu, Xiao-Jian Shao, Di Wang +6 more
2019PLoS ONE17 citations Open access
Semantic Scholar

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