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R. Roehe · SciRah

Researcher profile · Semantic Scholar

R. Roehe

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R. Roehe — researcher profile on SciRah

h-index: 39
Works: 207
Citations: 6,627

Most-cited papers

Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery
R. Stewart, M. Auffret, A. Warr, A. Walker +2 more
2019Nature Biotechnology504 citations Open access
Semantic Scholar
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
R. Stewart, M. Auffret, A. Warr, A. Wiser +8 more
2018Nature Communications503 citations Open access
Semantic Scholar
Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future
S. Huws, C. Creevey, L. Oyama, I. Mizrahi +33 more
2018Frontiers in Microbiology387 citations Open access
Semantic Scholar
Bovine Host Genetic Variation Influences Rumen Microbial Methane Production with Best Selection Criterion for Low Methane Emitting and Efficiently Feed Converting Hosts Based on Metagenomic Gene Abundance
R. Roehe, R. Dewhurst, C. Duthie, J. Rooke +7 more
2016PLoS Genetics278 citations Open access
Semantic Scholar
The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle
M. Auffret, R. Dewhurst, C. Duthie, J. Rooke +5 more
2017Microbiome181 citations Open access
Semantic Scholar
Identification of Complex Rumen Microbiome Interaction Within Diverse Functional Niches as Mechanisms Affecting the Variation of Methane Emissions in Bovine
M. Martínez-Álvaro, M. Auffret, R. Stewart, R. Dewhurst +7 more
2020Frontiers in Microbiology94 citations Open access
Semantic Scholar
Identification, Comparison, and Validation of Robust Rumen Microbial Biomarkers for Methane Emissions Using Diverse Bos Taurus Breeds and Basal Diets
M. Auffret, R. Stewart, R. Dewhurst, C. Duthie +6 more
2018Frontiers in Microbiology82 citations Open access
Semantic Scholar
Identification of Microbial Genetic Capacities and Potential Mechanisms Within the Rumen Microbiome Explaining Differences in Beef Cattle Feed Efficiency
M. Auffret, R. Stewart, R. Dewhurst, C. Duthie +2 more
2020Frontiers in Microbiology54 citations Open access
Semantic Scholar
Concepts and Consequences of a Core Gut Microbiota for Animal Growth and Development.
Daphne Perlman, M. Martínez-Álvaro, Sarah Moraïs, I. Altshuler +5 more
2021Annual Review of Animal Biosciences51 citations Open access
Semantic Scholar
Social network properties predict chronic aggression in commercial pig systems
S. Foister, A. Doeschl-Wilson, R. Roehe, G. Arnott +2 more
2018PLoS ONE50 citations Open access
Semantic Scholar
Temporal stability of the rumen microbiota in beef cattle, and response to diet and supplements
T. Snelling, M. Auffret, C. Duthie, R. Stewart +4 more
2019Animal Microbiome44 citations Open access
Semantic Scholar
The effect of dietary addition of nitrate or increase in lipid concentrations, alone or in combination, on performance and methane emissions of beef cattle.
C. Duthie, S. Troy, J. Hyslop, D. Ross +2 more
2017Animal43 citations Open access
Semantic Scholar
Association of Temperament and Acute Stress Responsiveness with Productivity, Feed Efficiency, and Methane Emissions in Beef Cattle: An Observational Study
P. Llonch, M. Somarriba, C. Duthie, M. Haskell +4 more
2016Frontiers in Veterinary Science40 citations Open access
Semantic Scholar
Relationships between feeding behaviour, activity, dominance and feed efficiency in finishing beef steers
M. Haskell, J. Rooke, R. Roehe, S. Turner +3 more
2019Applied Animal Behaviour Science39 citations
Semantic Scholar
Open prediction of polysaccharide utilisation loci (PUL) in 5414 public Bacteroidetes genomes using PULpy
R. Stewart, M. Auffret, R. Roehe, M. Watson
2018bioRxiv38 citations Open access
Semantic Scholar
MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs)
R. Stewart, M. Auffret, T. Snelling, R. Roehe +1 more
2017bioRxiv37 citations Open access
Semantic Scholar
Estimating Microbial Protein Synthesis in the Rumen—Can ‘Omics’ Methods Provide New Insights into a Long-Standing Question?
Joana Lima, Winfred Ingabire, R. Roehe, R. Dewhurst
2023Veterinary Sciences36 citations Open access
Semantic Scholar
Microbiome-driven breeding strategy potentially improves beef fatty acid profile benefiting human health and reduces methane emissions
M. Martínez-Álvaro, J. Mattock, M. Auffret, Zi-Qing Weng +5 more
2022Microbiome35 citations Open access
Semantic Scholar
The impact of divergent breed types and diets on methane emissions, rumen characteristics and performance of finishing beef cattle.
C. Duthie, M. Haskell, J. Hyslop, A. Waterhouse +3 more
2017Animal35 citations Open access
Semantic Scholar
Aggressive behaviour at regrouping is a poor predictor of chronic aggression in stable social groups
Simon P. Turner, Ian M. Nevison, Suzanne Desire, I. Camerlink +5 more
201733 citations
Semantic Scholar
Identification of intestinal and fecal microbial biomarkers using a porcine social stress model
Tuan Q. Nguyen, M. Martínez-Álvaro, Joana Lima, M. Auffret +5 more
2023Frontiers in Microbiology32 citations Open access
Semantic Scholar
Impact of adding nitrate or increasing the lipid content of two contrasting diets on blood methaemoglobin and performance of two breeds of finishing beef steers.
C. Duthie, J. Rooke, S. Troy, J. Hyslop +3 more
2016Animal31 citations Open access
Semantic Scholar
Links between the rumen microbiota, methane emissions and feed efficiency of finishing steers offered dietary lipid and nitrate supplementation
J. Bowen, P. Cormican, S. Lister, M. Mccabe +3 more
2020PLoS ONE30 citations Open access
Semantic Scholar
Changes in feed intake during isolation stress in respiration chambers may impact methane emissions assessment
P. Llonch, S. Troy, C. Duthie, M. Somarriba +4 more
201629 citations
Semantic Scholar
Unravelling the Role of Rumen Microbial Communities, Genes, and Activities on Milk Fatty Acid Profile Using a Combination of Omics Approaches
S. Stergiadis, I. Cabeza-Luna, Marina Mora-Ortiz, R. Stewart +5 more
2021Frontiers in Microbiology26 citations Open access
Semantic Scholar
Taxonomic annotation of 16S rRNA sequences of pig intestinal samples using MG-RAST and QIIME2 generated different microbiota compositions.
J. Lima, T. Manning, K. Rutherford, E. T. Baima +3 more
2021Journal of Microbiological Methods26 citations
Semantic Scholar
Integrated metagenomic analysis of the rumen microbiome of cattle reveals key biological mechanisms associated with methane traits.
Hai-Ying Wang, H. Zheng, F. Browne, R. Roehe +5 more
2017Methods26 citations Open access
Semantic Scholar
A comparison of methane emissions from beef cattle measured using methane hoods with those measured using respiration chambers
S. Troy, C. Duthie, D. Ross, J. Hyslop +3 more
201623 citations
Semantic Scholar
Invited Review: Novel methods and perspectives for modulating the rumen microbiome through selective breeding as a means to improve complex traits: implications for methane emissions in cattle
O. González-Recio, M. Martínez-Álvaro, F. Tiezzi, A. Saborío-Montero +2 more
2023Livestock Science22 citations Open access
Semantic Scholar
Breeding for pig welfare: Opportunities and challenges
S. Turner, I. Camerlink, E. Baxter, R. D'Eath +2 more
201720 citations
Semantic Scholar
Protozoal populations drive system-wide variation in the rumen microbiome
Carl M. Kobel, Andy O. Leu, Arturo Vera-Ponce de León, O. Øyås +16 more
2025bioRxiv17 citations Open access
Semantic Scholar
Temporal stability of the rumen microbiome and its longitudinal associations with performance traits in beef cattle
Joana Lima, M. Martínez-Álvaro, J. Mattock, M. Auffret +5 more
2024Scientific Reports17 citations Open access
Semantic Scholar
Comparison of HPLC and NMR for quantification of the main volatile fatty acids in rumen digesta
Meng-Yuan Wang, Hai-Ying Wang, H. Zheng, D. Uhrín +2 more
2021Scientific Reports17 citations Open access
Semantic Scholar
Different microbial genera drive methane emissions in beef cattle fed with two extreme diets
G. Miller, M. Auffret, R. Roehe, H. Nisbet +1 more
2023Frontiers in Microbiology14 citations Open access
Semantic Scholar
Automated Object Tracking for Animal Behaviour Studies
T. Manning, M. Somarriba, R. Roehe, Simon Turner +5 more
2019IEEE International Conference on Bioinformatics and Biomedicine11 citations
Semantic Scholar
The genomic and proteomic landscape of the rumen microbiome revealed by comprehensive genome-resolved metagenomics
R. Stewart, M. Auffret, A. Warr, A. Walker +2 more
2018bioRxiv11 citations Open access
Semantic Scholar
Including microbiome information in a multi-trait genomic evaluation: a case study on longitudinal growth performance in beef cattle
M. Martínez-Álvaro, J. Mattock, O. González-Recio, A. Saborío-Montero +7 more
2024Genetics Selection Evolution10 citations Open access
Semantic Scholar
Evaluation of direct and maternal responses in reproduction traits based on different selection strategies for postnatal piglet survival in a selection experiment
Tuan Q. Nguyen, P. Knap, G. Simm, S. Edwards +1 more
2021Genetics Selection Evolution10 citations Open access
Semantic Scholar
Genetic Analysis of Novel Behaviour Traits in Pigs Derived from Social Network Analysis
S. Agha, S. Foister, R. Roehe, S. Turner +1 more
2022Genes9 citations Open access
Semantic Scholar
Nutritional strategies to reduce methane emissions from cattle: Effects on meat eating quality and retail shelf life of loin steaks.
I. Richardson, C. Duthie, J. Hyslop, J. Rooke +1 more
2019Meat Science9 citations Open access
Semantic Scholar
A heat diffusion multilayer network approach for the identification of functional biomarkers in rumen methane emissions.
Meng-Yuan Wang, Hai-Ying Wang, H. Zheng, R. Dewhurst +1 more
2020Methods8 citations Open access
Semantic Scholar
Correction to: The rumen microbiome as a reservoir of antimicrobial resistance and pathogenicity genes is directly affected by diet in beef cattle
M. Auffret, R. Dewhurst, C. Duthie, J. Rooke +5 more
2019Microbiome8 citations Open access
Semantic Scholar
Fat accretion measurements strengthen the relationship between feed conversion efficiency and Nitrogen isotopic discrimination while rumen microbial genes contribute little
S. Meale, M. Auffret, M. Watson, D. Morgavi +4 more
2018Scientific Reports7 citations Open access
Semantic Scholar
Genetic Associations of Novel Behaviour Traits Derived from Social Network Analysis with Growth, Feed Efficiency, and Carcass Characteristics in Pigs
S. Agha, S. Turner, C. Lewis, Suzanne Desire +2 more
2022Genes6 citations Open access
Semantic Scholar
Improving the Inference of Co-Occurrence Networks in the Bovine Rumen Microbiome
H. Zheng, Hai-Ying Wang, R. Dewhurst, R. Roehe
2020IEEE/ACM Transactions on Computational Biology & Bioinformatics6 citations Open access
Semantic Scholar
A Knowledge-Driven Network-Based Analytical Framework for the Identification of Rumen Metabolites
Meng-Yuan Wang, Hai-Ying Wang, H. Zheng, R. Dewhurst +1 more
2020IEEE Transactions on Nanobioscience6 citations Open access
Semantic Scholar
Heterogeneous variances and genetics by environment interactions in genetic evaluation of crossbred lambs.
G. Márquez, W. Haresign, M. Davies, R. Roehe +3 more
2015Animal6 citations Open access
Semantic Scholar
Metabolic capabilities of key rumen microbiota drive methane emissions in cattle
Wan-Xin Lai, A. Alberdi, Andy O. Leu, A. D. de León +5 more
2025mSystems5 citations Open access
Semantic Scholar
KOunt: a reproducible KEGG orthologue abundance workflow
J. Mattock, M. Martínez-Álvaro, M. Cleveland, R. Roehe +1 more
2023bioRxiv5 citations Open access
Semantic Scholar
Bovine host genome acts on specific metabolism, communication and genetic processes of rumen microbes host-genomically linked to methane emissions
M. Martínez-Álvaro, M. Auffret, C. Duthie, R. Dewhurst +3 more
20215 citations Open access
Semantic Scholar

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